Wall clock time and date at job start Tue Mar 31 2020 19:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34672 * 116.99883 * 2 1 4 4 O 1.21426 * 120.00159 * 359.97438 * 3 2 1 5 5 C 1.48064 * 119.99808 * 180.02562 * 3 2 1 6 6 C 1.40060 * 120.88630 * 0.24254 * 5 3 2 7 7 C 1.37948 * 119.16434 * 180.30148 * 6 5 3 8 8 N 1.31914 * 121.00859 * 359.72554 * 7 6 5 9 9 C 1.32311 * 121.96157 * 359.97438 * 8 7 6 10 10 N 1.39021 * 119.64678 * 180.02562 * 9 8 7 11 11 C 1.46852 * 110.99681 * 63.59615 * 10 9 8 12 12 C 1.53043 * 109.52072 * 174.16226 * 11 10 9 13 13 C 1.53117 * 109.27874 * 59.17834 * 12 11 10 14 14 C 1.50707 * 109.52248 * 182.44041 * 13 12 11 15 15 H 1.07998 * 119.99624 * 119.68075 * 14 13 12 16 16 C 1.37869 * 119.99876 * 299.68345 * 14 13 12 17 17 N 1.31517 * 120.00240 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00050 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47010 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47252 * 119.99717 * 18 16 14 21 21 H 1.48505 * 109.47264 * 239.99963 * 18 16 14 22 22 C 1.53122 * 109.16165 * 302.34713 * 13 12 11 23 23 C 1.46847 * 111.00240 * 299.38738 * 10 9 8 24 24 C 1.39126 * 120.71146 * 0.02562 * 9 8 7 25 25 N 1.48022 * 120.53921 * 180.02562 * 24 9 8 26 26 O 1.21801 * 119.99967 * 91.04513 * 25 24 9 27 27 O 1.21806 * 119.99706 * 271.04868 * 25 24 9 28 28 H 1.09000 * 109.46810 * 299.99888 * 1 2 3 29 29 H 1.09002 * 109.47328 * 59.99663 * 1 2 3 30 30 H 1.08998 * 109.47163 * 180.02562 * 1 2 3 31 31 H 1.07992 * 120.41591 * 0.02562 * 6 5 3 32 32 H 1.08001 * 119.49530 * 179.70389 * 7 6 5 33 33 H 1.09000 * 109.46245 * 294.17692 * 11 10 9 34 34 H 1.08999 * 109.46345 * 54.15032 * 11 10 9 35 35 H 1.08997 * 109.50027 * 299.23783 * 12 11 10 36 36 H 1.08995 * 109.50293 * 179.12351 * 12 11 10 37 37 H 1.09002 * 109.52186 * 62.25239 * 13 12 11 38 38 H 0.97006 * 119.99976 * 179.97438 * 17 16 14 39 39 H 1.09005 * 109.50286 * 297.70970 * 22 13 12 40 40 H 1.08997 * 109.50464 * 177.59674 * 22 13 12 41 41 H 1.09002 * 109.45706 * 305.85478 * 23 10 9 42 42 H 1.09004 * 109.46112 * 65.82044 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4020 2.2183 -0.0005 5 6 3.5420 1.2774 -0.0006 6 6 4.3228 0.1147 -0.0062 7 6 5.6976 0.2282 -0.0002 8 7 6.2819 1.4109 0.0053 9 6 5.5856 2.5360 0.0048 10 7 6.2512 3.7566 0.0102 11 6 7.0435 3.9293 -1.2141 12 6 7.6430 5.3372 -1.2409 13 6 8.5272 5.5337 -0.0064 14 6 9.0727 6.9386 0.0039 15 1 8.8452 7.6000 0.8267 16 6 9.8619 7.3792 -1.0371 17 7 10.1393 6.5735 -2.0389 18 14 10.5386 9.1203 -1.0240 19 1 10.0847 9.8185 0.2055 20 1 12.0227 9.0748 -1.0487 21 1 10.0458 9.8520 -2.2187 22 6 7.6896 5.3007 1.2540 23 6 7.0888 3.8940 1.2085 24 6 4.1946 2.5108 -0.0011 25 7 3.4195 3.7719 -0.0021 26 8 3.0886 4.2824 -1.0573 27 8 3.1126 4.2990 1.0522 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.8545 -0.8584 -0.0106 32 1 6.3049 -0.6649 0.0003 33 1 7.8463 3.1923 -1.2342 34 1 6.4019 3.7912 -2.0844 35 1 6.8403 6.0746 -1.2348 36 1 8.2436 5.4598 -2.1421 37 1 9.3523 4.8218 -0.0323 38 1 10.6943 6.8838 -2.7715 39 1 6.8877 6.0376 1.2995 40 1 8.3236 5.3972 2.1353 41 1 6.4801 3.7301 2.0977 42 1 7.8914 3.1571 1.1770 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598610481.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:45 Heat of formation + Delta-G solvation = -48.535157 kcal Electronic energy + Delta-G solvation = -29680.197379 eV Core-core repulsion = 25435.805908 eV Total energy + Delta-G solvation = -4244.391471 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.50095 -42.14351 -41.57693 -39.64761 -37.98632 -37.59415 -36.12121 -34.68010 -33.80149 -31.88622 -31.58217 -29.29268 -28.14431 -27.64334 -26.07594 -24.38865 -24.03131 -23.66576 -22.51763 -20.70740 -20.45732 -19.89342 -19.65375 -19.16920 -18.49939 -18.31834 -17.83304 -17.61036 -17.00663 -16.61150 -16.39189 -16.08792 -15.26769 -15.24729 -15.10080 -14.74856 -14.61678 -14.41891 -14.28308 -14.12171 -13.33556 -13.22457 -13.01408 -12.84855 -12.82798 -12.50905 -12.42504 -12.39391 -12.25621 -12.19236 -12.09519 -12.08221 -11.83305 -11.52516 -11.40645 -10.98672 -10.81869 -10.66083 -10.42825 -10.01066 -8.10984 -6.23147 -1.31704 -0.81329 -0.62476 0.14781 0.91114 0.97065 1.39395 1.42223 1.53092 1.99082 2.10207 2.43080 2.86453 2.91649 3.15237 3.17793 3.26987 3.59215 3.93829 4.00446 4.05640 4.16400 4.23406 4.23969 4.32211 4.38691 4.50961 4.62089 4.63500 4.76533 4.83500 4.85400 4.91542 5.04009 5.11525 5.14286 5.42235 5.53458 5.65139 5.80865 5.98073 6.05704 6.08583 6.18201 6.35552 6.36027 6.86407 7.44688 8.94423 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023464 B = 0.003033 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.006553 B = 9230.382106 C = 9783.784780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.328 6.328 3 C 0.506 3.494 4 O -0.519 6.519 5 C -0.047 4.047 6 C -0.075 4.075 7 C 0.161 3.839 8 N -0.482 5.482 9 C 0.341 3.659 10 N -0.516 5.516 11 C 0.082 3.918 12 C -0.094 4.094 13 C 0.048 3.952 14 C -0.532 4.532 15 H 0.050 0.950 16 C 0.014 3.986 17 N -0.916 5.916 18 Si 0.952 3.048 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.282 1.282 22 C -0.099 4.099 23 C 0.078 3.922 24 C -0.033 4.033 25 N 0.051 4.949 26 O -0.162 6.162 27 O -0.147 6.147 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.152 0.848 31 H 0.225 0.775 32 H 0.241 0.759 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.026 0.974 36 H 0.074 0.926 37 H 0.002 0.998 38 H 0.261 0.739 39 H 0.046 0.954 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.859 -23.591 4.247 28.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.243 6.243 3 C 0.349 3.651 4 O -0.408 6.408 5 C -0.058 4.058 6 C -0.094 4.094 7 C 0.001 3.999 8 N -0.195 5.195 9 C 0.114 3.886 10 N -0.241 5.241 11 C -0.044 4.044 12 C -0.133 4.133 13 C 0.029 3.971 14 C -0.570 4.570 15 H 0.069 0.931 16 C -0.184 4.184 17 N -0.555 5.555 18 Si 0.778 3.222 19 H -0.194 1.194 20 H -0.204 1.204 21 H -0.208 1.208 22 C -0.137 4.137 23 C -0.048 4.048 24 C -0.119 4.119 25 N 0.579 4.421 26 O -0.382 6.382 27 O -0.371 6.371 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.170 0.830 31 H 0.242 0.758 32 H 0.257 0.743 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.092 0.908 37 H 0.020 0.980 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.041 -23.491 4.085 27.671 hybrid contribution -0.314 1.424 -0.332 1.496 sum -14.355 -22.067 3.752 26.591 Atomic orbital electron populations 1.23815 0.72707 1.06986 1.02972 1.86476 1.26191 1.28653 1.82966 1.20872 0.88053 0.82970 0.73160 1.91007 1.67022 1.37371 1.45380 1.19386 0.91670 0.91887 1.02828 1.23213 0.94177 0.98821 0.93230 1.24191 0.93008 0.95657 0.87044 1.68279 1.40446 0.99105 1.11699 1.19492 0.86754 0.90609 0.91738 1.60198 1.33919 1.23857 1.06167 1.22093 0.94576 0.99270 0.88425 1.21473 0.97210 0.92096 1.02478 1.18641 0.92336 0.95182 0.90905 1.21542 1.30435 0.99049 1.05948 0.93133 1.25699 0.96446 1.01026 0.95257 1.69985 1.38516 1.36872 1.10148 0.85590 0.78084 0.80514 0.77983 1.19413 1.20357 1.20821 1.21574 0.98480 0.94224 0.99427 1.22102 0.94684 0.98600 0.89389 1.21968 0.91914 0.84300 1.13710 1.43071 0.97698 1.01357 0.99945 1.94521 1.57023 1.65669 1.20965 1.94493 1.57348 1.64291 1.21012 0.91671 0.91769 0.82993 0.75814 0.74274 0.93240 0.91995 0.95562 0.90755 0.97951 0.92964 0.93544 0.91203 0.90412 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.45 16 2 O -0.33 -4.59 9.92 -55.81 -0.55 -5.14 16 3 C 0.51 11.56 7.92 70.43 0.56 12.12 16 4 O -0.52 -16.49 14.51 24.99 0.36 -16.12 16 5 C -0.05 -1.03 5.90 -19.91 -0.12 -1.15 16 6 C -0.07 -0.74 9.70 22.64 0.22 -0.53 16 7 C 0.16 1.80 11.16 84.61 0.94 2.74 16 8 N -0.48 -11.42 9.70 -193.41 -1.88 -13.30 16 9 C 0.34 10.64 5.29 133.08 0.70 11.35 16 10 N -0.52 -19.58 4.35 -702.04 -3.05 -22.63 16 11 C 0.08 3.35 5.28 86.33 0.46 3.80 16 12 C -0.09 -4.67 5.12 30.65 0.16 -4.51 16 13 C 0.05 2.44 2.16 -11.46 -0.02 2.41 16 14 C -0.53 -29.94 8.56 25.60 0.22 -29.72 16 15 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 16 C 0.01 0.81 5.31 84.65 0.45 1.26 16 17 N -0.92 -53.00 11.37 21.44 0.24 -52.76 16 18 Si 0.95 44.60 29.54 68.60 2.03 46.63 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 22 C -0.10 -4.26 5.32 30.64 0.16 -4.10 16 23 C 0.08 2.83 5.25 86.32 0.45 3.29 16 24 C -0.03 -1.04 6.22 36.90 0.23 -0.81 16 25 N 0.05 1.98 2.31 -45.20 -0.10 1.88 16 26 O -0.16 -6.88 18.97 21.84 0.41 -6.47 16 27 O -0.15 -6.07 19.05 21.26 0.40 -5.66 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.15 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.23 -0.08 7.71 -2.91 -0.02 -0.10 16 32 H 0.24 0.02 8.06 -2.91 -0.02 0.00 16 33 H 0.05 1.99 8.05 -2.39 -0.02 1.97 16 34 H 0.06 2.45 8.10 -2.39 -0.02 2.44 16 35 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 4.07 6.17 -2.39 -0.01 4.06 16 37 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 39 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.08 2.57 8.10 -2.39 -0.02 2.55 16 42 H 0.06 1.96 8.00 -2.38 -0.02 1.94 16 Total: -1.00 -79.37 362.05 4.53 -74.84 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: 1.05 Total: 1.13 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 5.61 Total: -2.40 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -4.79 Total: -86.81 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: 0.63 Total: -33.39 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -79.37 4.53 -74.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598610481.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.305 kcal (2) G-P(sol) polarization free energy of solvation -79.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds