Wall clock time and date at job start Tue Mar 31 2020 19:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34675 * 116.99655 * 2 1 4 4 O 1.21427 * 120.00052 * 0.02562 * 3 2 1 5 5 C 1.48063 * 120.00050 * 180.02562 * 3 2 1 6 6 C 1.40065 * 120.88399 * 359.97438 * 5 3 2 7 7 C 1.37953 * 119.16560 * 180.02562 * 6 5 3 8 8 N 1.31912 * 121.00758 * 359.74518 * 7 6 5 9 9 C 1.32317 * 121.95724 * 0.52628 * 8 7 6 10 10 N 1.39024 * 119.64135 * 179.74997 * 9 8 7 11 11 C 1.46851 * 111.00082 * 296.58364 * 10 9 8 12 12 C 1.53036 * 109.52451 * 185.83776 * 11 10 9 13 13 C 1.53115 * 109.28267 * 300.82280 * 12 11 10 14 14 C 1.53124 * 109.15788 * 57.65140 * 13 12 11 15 15 H 1.08991 * 109.50352 * 62.33266 * 14 13 12 16 16 C 1.50702 * 109.50118 * 182.40685 * 14 13 12 17 17 H 1.08003 * 119.99808 * 119.91926 * 16 14 13 18 18 C 1.37877 * 120.00149 * 300.20081 * 16 14 13 19 19 N 1.31517 * 119.99961 * 179.72807 * 18 16 14 20 20 Si 1.86799 * 119.99994 * 359.72133 * 18 16 14 21 21 H 1.48499 * 109.47123 * 89.99955 * 20 18 16 22 22 H 1.48501 * 109.47135 * 210.00544 * 20 18 16 23 23 H 1.48504 * 109.47000 * 330.00162 * 20 18 16 24 24 C 1.46848 * 110.99769 * 60.83218 * 10 9 8 25 25 C 1.39116 * 120.71583 * 359.47778 * 9 8 7 26 26 N 1.48023 * 120.54214 * 180.27610 * 25 9 8 27 27 O 1.21796 * 120.00218 * 89.60677 * 26 25 9 28 28 O 1.21800 * 119.99789 * 269.61173 * 26 25 9 29 29 H 1.09002 * 109.46925 * 299.99549 * 1 2 3 30 30 H 1.08993 * 109.47381 * 60.00068 * 1 2 3 31 31 H 1.09002 * 109.46734 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.41690 * 0.04484 * 6 5 3 33 33 H 1.07998 * 119.48926 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.46397 * 65.82415 * 11 10 9 35 35 H 1.09007 * 109.46318 * 305.85572 * 11 10 9 36 36 H 1.09002 * 109.50768 * 180.87658 * 12 11 10 37 37 H 1.09007 * 109.53455 * 60.78247 * 12 11 10 38 38 H 1.08999 * 109.51967 * 297.74942 * 13 12 11 39 39 H 1.08997 * 109.58007 * 177.58747 * 13 12 11 40 40 H 0.97003 * 119.99812 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.49220 * 54.16837 * 24 10 9 42 42 H 1.08993 * 109.43039 * 294.19760 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.2000 0.0000 4 8 1.4019 2.2183 0.0005 5 6 3.5419 1.2776 -0.0006 6 6 4.3229 0.1149 -0.0006 7 6 5.6977 0.2284 -0.0006 8 7 6.2819 1.4112 -0.0056 9 6 5.5855 2.5362 -0.0005 10 7 6.2510 3.7568 -0.0009 11 6 7.0467 3.9228 1.2221 12 6 7.6463 5.3304 1.2551 13 6 8.5271 5.5340 0.0194 14 6 7.6859 5.3080 -1.2400 15 1 6.8844 6.0455 -1.2795 16 6 8.5592 5.4483 -2.4602 17 1 8.6732 4.6178 -3.1411 18 6 9.2174 6.6351 -2.7041 19 7 9.9837 6.7558 -3.7661 20 14 9.0204 8.0716 -1.5263 21 1 10.0654 7.9958 -0.4741 22 1 9.1615 9.3472 -2.2734 23 1 7.6774 8.0136 -0.8952 24 6 7.0846 3.9012 -1.2013 25 6 4.1946 2.5110 -0.0005 26 7 3.4193 3.7720 -0.0009 27 8 3.1065 4.2942 -1.0558 28 8 3.0944 4.2874 1.0537 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.8546 -0.8583 -0.0009 33 1 6.3049 -0.6647 -0.0010 34 1 7.8496 3.1857 1.2359 35 1 6.4076 3.7797 2.0935 36 1 8.2495 5.4481 2.1554 37 1 6.8440 6.0684 1.2557 38 1 9.3522 4.8220 0.0389 39 1 8.9225 6.5497 0.0159 40 1 10.4470 7.5906 -3.9375 41 1 6.4733 3.7431 -2.0898 42 1 7.8868 3.1638 -1.1765 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598632704.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:48 Heat of formation + Delta-G solvation = -20.355673 kcal Electronic energy + Delta-G solvation = -29929.785599 eV Core-core repulsion = 25686.616082 eV Total energy + Delta-G solvation = -4243.169517 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.31418 -41.05871 -40.60322 -38.44712 -37.14538 -36.17792 -34.53179 -33.64296 -32.45446 -30.64518 -30.49281 -28.61539 -26.83914 -25.68492 -25.10709 -23.89519 -22.77283 -21.81035 -21.32132 -19.43796 -19.13221 -18.71552 -18.50189 -18.08542 -17.35916 -17.02675 -16.92958 -16.31573 -15.92696 -15.45562 -15.20422 -14.72763 -14.29762 -14.15800 -13.99396 -13.74001 -13.55557 -13.15675 -12.97423 -12.66540 -12.50666 -12.35454 -11.51834 -11.41990 -11.40145 -11.34067 -11.17893 -11.13269 -10.86883 -10.76893 -10.70269 -10.43338 -10.26210 -10.05481 -9.88375 -9.76771 -9.24696 -9.04587 -8.65882 -8.55081 -6.09830 -4.10307 -0.40351 0.10981 0.82135 1.32993 1.77661 1.80952 2.85674 3.21614 3.27448 3.40773 3.43904 3.67993 3.79068 4.03984 4.31693 4.36076 4.40740 4.59969 4.70718 4.83125 4.96379 5.04409 5.13827 5.22859 5.31155 5.46148 5.59149 5.60836 5.76721 5.94107 6.07161 6.10864 6.29112 6.42190 6.46644 6.61428 6.63445 6.91973 6.93316 7.03063 7.09899 7.15278 7.51056 7.72391 7.83880 8.45784 8.91426 9.51775 11.03053 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019342 B = 0.003476 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.295460 B = 8052.944022 C = 8389.604974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.345 6.345 3 C 0.503 3.497 4 O -0.473 6.473 5 C -0.032 4.032 6 C -0.121 4.121 7 C 0.143 3.857 8 N -0.465 5.465 9 C 0.364 3.636 10 N -0.506 5.506 11 C 0.069 3.931 12 C -0.120 4.120 13 C -0.125 4.125 14 C 0.022 3.978 15 H 0.039 0.961 16 C -0.516 4.516 17 H 0.074 0.926 18 C 0.074 3.926 19 N -0.899 5.899 20 Si 0.886 3.114 21 H -0.279 1.279 22 H -0.296 1.296 23 H -0.262 1.262 24 C 0.083 3.917 25 C -0.009 4.009 26 N 0.046 4.954 27 O -0.119 6.119 28 O -0.132 6.132 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.172 0.828 33 H 0.185 0.815 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.265 0.735 41 H 0.070 0.930 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.066 -18.239 11.259 25.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.261 6.261 3 C 0.345 3.655 4 O -0.359 6.359 5 C -0.043 4.043 6 C -0.142 4.142 7 C -0.016 4.016 8 N -0.178 5.178 9 C 0.135 3.865 10 N -0.231 5.231 11 C -0.056 4.056 12 C -0.158 4.158 13 C -0.162 4.162 14 C 0.003 3.997 15 H 0.057 0.943 16 C -0.554 4.554 17 H 0.092 0.908 18 C -0.128 4.128 19 N -0.537 5.537 20 Si 0.716 3.284 21 H -0.206 1.206 22 H -0.224 1.224 23 H -0.186 1.186 24 C -0.041 4.041 25 C -0.095 4.095 26 N 0.580 4.420 27 O -0.345 6.345 28 O -0.355 6.355 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.128 0.872 32 H 0.189 0.811 33 H 0.202 0.798 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.218 -18.030 11.147 24.981 hybrid contribution -0.657 0.416 0.515 0.932 sum -13.875 -17.614 11.661 25.273 Atomic orbital electron populations 1.23452 0.74402 1.04438 1.03418 1.86479 1.24704 1.30955 1.83939 1.20740 0.87953 0.82619 0.74219 1.91014 1.66107 1.35683 1.43072 1.19130 0.91250 0.92048 1.01850 1.22543 0.94761 0.98505 0.98380 1.23162 0.92124 0.95859 0.90500 1.68258 1.40206 0.98422 1.10920 1.19726 0.87105 0.90503 0.89163 1.60469 1.34478 1.21212 1.06954 1.22117 0.95376 0.99064 0.89067 1.21683 0.99711 0.95085 0.99274 1.22074 0.98506 1.00978 0.94669 1.19191 0.95209 0.91434 0.93894 0.94250 1.20866 1.27400 1.00310 1.06832 0.90823 1.24946 0.94452 0.98302 0.95131 1.69889 1.30215 1.26589 1.26970 0.86853 0.79364 0.81664 0.80520 1.20600 1.22397 1.18645 1.22311 0.93836 1.00793 0.87189 1.21897 0.92197 0.85174 1.10207 1.42643 0.98238 1.00453 1.00715 1.94578 1.56062 1.63186 1.20650 1.94520 1.56103 1.63972 1.20891 0.91219 0.91139 0.87194 0.81093 0.79841 0.92780 0.91478 0.91682 0.91312 0.92045 0.92946 0.92549 0.91120 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.28 16 2 O -0.34 -3.02 9.92 -40.43 -0.40 -3.42 16 3 C 0.50 6.16 7.92 34.76 0.28 6.44 16 4 O -0.47 -7.41 14.51 -24.35 -0.35 -7.76 16 5 C -0.03 -0.39 5.90 -104.70 -0.62 -1.01 16 6 C -0.12 -0.95 9.70 -39.00 -0.38 -1.33 16 7 C 0.14 1.20 11.16 -17.62 -0.20 1.00 16 8 N -0.46 -6.12 9.70 -12.49 -0.12 -6.24 16 9 C 0.36 5.76 5.29 -155.08 -0.82 4.94 16 10 N -0.51 -9.19 4.35 -173.25 -0.75 -9.95 16 11 C 0.07 1.13 5.28 -3.83 -0.02 1.11 16 12 C -0.12 -2.09 6.09 -26.65 -0.16 -2.25 16 13 C -0.12 -2.64 4.74 -26.61 -0.13 -2.77 16 14 C 0.02 0.52 1.85 -91.69 -0.17 0.35 16 15 H 0.04 1.00 7.21 -51.93 -0.37 0.62 16 16 C -0.52 -14.35 9.15 -34.44 -0.32 -14.66 16 17 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 18 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 19 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 20 Si 0.89 22.08 24.35 -169.99 -4.14 17.94 16 21 H -0.28 -6.70 6.88 56.52 0.39 -6.31 16 22 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 23 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 24 C 0.08 1.70 4.47 -3.83 -0.02 1.69 16 25 C -0.01 -0.14 6.22 -79.13 -0.49 -0.64 16 26 N 0.05 0.86 2.31 34.36 0.08 0.94 16 27 O -0.12 -2.40 19.03 -32.09 -0.61 -3.01 16 28 O -0.13 -2.52 18.99 -32.42 -0.62 -3.14 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.17 0.69 7.71 -52.49 -0.40 0.28 16 33 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.05 0.85 8.05 -51.93 -0.42 0.43 16 35 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.05 1.18 3.33 -51.93 -0.17 1.01 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.07 1.51 8.11 -51.93 -0.42 1.09 16 42 H 0.05 1.08 8.00 -51.93 -0.42 0.66 16 LS Contribution 355.15 15.07 5.35 5.35 Total: -1.00 -34.90 355.15 -8.05 -42.94 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -5.18 Total: -3.20 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -2.07 Total: -3.82 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: -0.02 Total: -41.89 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -1.98 Total: -17.33 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.14 Total: 17.94 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.90 -8.05 -42.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598632704.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.588 kcal (2) G-P(sol) polarization free energy of solvation -34.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds