Wall clock time and date at job start Tue Mar 31 2020 19:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34675 * 116.99655 * 2 1 4 4 O 1.21427 * 120.00052 * 0.02562 * 3 2 1 5 5 C 1.48063 * 120.00050 * 180.02562 * 3 2 1 6 6 C 1.40065 * 120.88399 * 359.97438 * 5 3 2 7 7 C 1.37953 * 119.16560 * 180.02562 * 6 5 3 8 8 N 1.31912 * 121.00758 * 359.74518 * 7 6 5 9 9 C 1.32317 * 121.95724 * 0.52628 * 8 7 6 10 10 N 1.39024 * 119.64135 * 179.74997 * 9 8 7 11 11 C 1.46851 * 111.00082 * 296.58364 * 10 9 8 12 12 C 1.53036 * 109.52451 * 185.83776 * 11 10 9 13 13 C 1.53115 * 109.28267 * 300.82280 * 12 11 10 14 14 C 1.53124 * 109.15788 * 57.65140 * 13 12 11 15 15 H 1.08991 * 109.50352 * 62.33266 * 14 13 12 16 16 C 1.50702 * 109.50118 * 182.40685 * 14 13 12 17 17 H 1.08003 * 119.99808 * 119.91926 * 16 14 13 18 18 C 1.37877 * 120.00149 * 300.20081 * 16 14 13 19 19 N 1.31517 * 119.99961 * 179.72807 * 18 16 14 20 20 Si 1.86799 * 119.99994 * 359.72133 * 18 16 14 21 21 H 1.48499 * 109.47123 * 89.99955 * 20 18 16 22 22 H 1.48501 * 109.47135 * 210.00544 * 20 18 16 23 23 H 1.48504 * 109.47000 * 330.00162 * 20 18 16 24 24 C 1.46848 * 110.99769 * 60.83218 * 10 9 8 25 25 C 1.39116 * 120.71583 * 359.47778 * 9 8 7 26 26 N 1.48023 * 120.54214 * 180.27610 * 25 9 8 27 27 O 1.21796 * 120.00218 * 89.60677 * 26 25 9 28 28 O 1.21800 * 119.99789 * 269.61173 * 26 25 9 29 29 H 1.09002 * 109.46925 * 299.99549 * 1 2 3 30 30 H 1.08993 * 109.47381 * 60.00068 * 1 2 3 31 31 H 1.09002 * 109.46734 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.41690 * 0.04484 * 6 5 3 33 33 H 1.07998 * 119.48926 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.46397 * 65.82415 * 11 10 9 35 35 H 1.09007 * 109.46318 * 305.85572 * 11 10 9 36 36 H 1.09002 * 109.50768 * 180.87658 * 12 11 10 37 37 H 1.09007 * 109.53455 * 60.78247 * 12 11 10 38 38 H 1.08999 * 109.51967 * 297.74942 * 13 12 11 39 39 H 1.08997 * 109.58007 * 177.58747 * 13 12 11 40 40 H 0.97003 * 119.99812 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.49220 * 54.16837 * 24 10 9 42 42 H 1.08993 * 109.43039 * 294.19760 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.2000 0.0000 4 8 1.4019 2.2183 0.0005 5 6 3.5419 1.2776 -0.0006 6 6 4.3229 0.1149 -0.0006 7 6 5.6977 0.2284 -0.0006 8 7 6.2819 1.4112 -0.0056 9 6 5.5855 2.5362 -0.0005 10 7 6.2510 3.7568 -0.0009 11 6 7.0467 3.9228 1.2221 12 6 7.6463 5.3304 1.2551 13 6 8.5271 5.5340 0.0194 14 6 7.6859 5.3080 -1.2400 15 1 6.8844 6.0455 -1.2795 16 6 8.5592 5.4483 -2.4602 17 1 8.6732 4.6178 -3.1411 18 6 9.2174 6.6351 -2.7041 19 7 9.9837 6.7558 -3.7661 20 14 9.0204 8.0716 -1.5263 21 1 10.0654 7.9958 -0.4741 22 1 9.1615 9.3472 -2.2734 23 1 7.6774 8.0136 -0.8952 24 6 7.0846 3.9012 -1.2013 25 6 4.1946 2.5110 -0.0005 26 7 3.4193 3.7720 -0.0009 27 8 3.1065 4.2942 -1.0558 28 8 3.0944 4.2874 1.0537 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.8546 -0.8583 -0.0009 33 1 6.3049 -0.6647 -0.0010 34 1 7.8496 3.1857 1.2359 35 1 6.4076 3.7797 2.0935 36 1 8.2495 5.4481 2.1554 37 1 6.8440 6.0684 1.2557 38 1 9.3522 4.8220 0.0389 39 1 8.9225 6.5497 0.0159 40 1 10.4470 7.5906 -3.9375 41 1 6.4733 3.7431 -2.0898 42 1 7.8868 3.1638 -1.1765 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598632704.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:48 Heat of formation + Delta-G solvation = -43.896604 kcal Electronic energy + Delta-G solvation = -29930.806411 eV Core-core repulsion = 25686.616082 eV Total energy + Delta-G solvation = -4244.190328 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.51065 -42.15437 -41.59730 -39.78456 -37.99017 -37.60035 -36.06520 -34.69894 -34.24606 -32.24755 -31.84419 -29.28739 -27.92247 -27.11547 -26.70906 -25.15942 -23.85279 -23.23596 -22.57955 -20.80923 -20.52311 -19.89685 -19.72666 -19.24622 -18.81230 -18.30234 -17.83678 -17.67911 -17.10525 -16.52608 -16.48341 -16.05709 -15.67874 -15.30281 -15.09327 -14.89099 -14.82956 -14.60384 -14.31961 -14.17870 -13.88430 -13.22810 -13.02164 -12.94464 -12.85220 -12.55790 -12.49581 -12.40103 -12.26261 -12.10075 -12.08454 -11.94840 -11.80498 -11.61694 -11.44321 -11.12755 -11.04909 -10.70018 -10.65683 -10.02602 -8.34379 -6.38754 -1.32079 -0.81674 -0.62958 0.14118 0.90640 0.96902 1.26512 1.35745 1.45589 1.98353 2.09033 2.29586 2.86090 2.91051 3.01104 3.15272 3.26418 3.58672 3.80431 3.91786 3.99517 4.09361 4.16063 4.23012 4.25909 4.37070 4.38462 4.52276 4.62618 4.62942 4.75243 4.79124 4.84698 4.86808 4.97084 5.04422 5.09774 5.29535 5.43612 5.59190 5.73394 5.81411 6.08109 6.16696 6.22961 6.35222 6.66268 7.26869 8.82122 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019342 B = 0.003476 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.295460 B = 8052.944022 C = 8389.604974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.328 6.328 3 C 0.506 3.494 4 O -0.518 6.518 5 C -0.048 4.048 6 C -0.075 4.075 7 C 0.160 3.840 8 N -0.480 5.480 9 C 0.342 3.658 10 N -0.523 5.523 11 C 0.072 3.928 12 C -0.114 4.114 13 C -0.121 4.121 14 C 0.022 3.978 15 H 0.017 0.983 16 C -0.520 4.520 17 H 0.037 0.963 18 C 0.020 3.980 19 N -0.945 5.945 20 Si 0.947 3.053 21 H -0.258 1.258 22 H -0.298 1.298 23 H -0.256 1.256 24 C 0.103 3.897 25 C -0.034 4.034 26 N 0.050 4.950 27 O -0.175 6.175 28 O -0.133 6.133 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.152 0.848 32 H 0.224 0.776 33 H 0.241 0.759 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.041 0.959 40 H 0.267 0.733 41 H 0.048 0.952 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.391 -21.820 14.007 29.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.243 6.243 3 C 0.349 3.651 4 O -0.408 6.408 5 C -0.058 4.058 6 C -0.095 4.095 7 C 0.001 3.999 8 N -0.194 5.194 9 C 0.115 3.885 10 N -0.248 5.248 11 C -0.053 4.053 12 C -0.151 4.151 13 C -0.159 4.159 14 C 0.003 3.997 15 H 0.035 0.965 16 C -0.558 4.558 17 H 0.055 0.945 18 C -0.178 4.178 19 N -0.585 5.585 20 Si 0.774 3.226 21 H -0.183 1.183 22 H -0.226 1.226 23 H -0.181 1.181 24 C -0.022 4.022 25 C -0.119 4.119 26 N 0.579 4.421 27 O -0.391 6.391 28 O -0.362 6.362 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.170 0.830 32 H 0.241 0.759 33 H 0.257 0.743 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.563 -21.624 13.839 29.036 hybrid contribution -0.623 1.191 -0.342 1.387 sum -14.186 -20.433 13.497 28.301 Atomic orbital electron populations 1.23812 0.72710 1.06973 1.02971 1.86477 1.26192 1.28669 1.82965 1.20878 0.88068 0.82972 0.73161 1.91005 1.67016 1.37358 1.45380 1.19388 0.91670 0.91931 1.02813 1.23211 0.94209 0.98823 0.93261 1.24183 0.92995 0.95693 0.87065 1.68262 1.40384 0.99071 1.11655 1.19442 0.86681 0.90619 0.91746 1.60185 1.34138 1.24086 1.06363 1.22156 0.95860 0.98348 0.88955 1.21653 0.99127 0.95741 0.98623 1.21929 0.98683 1.00244 0.95034 1.19061 0.94236 0.92916 0.93534 0.96509 1.21152 1.27588 0.99199 1.07857 0.94504 1.25754 0.94178 1.01124 0.96745 1.70024 1.31808 1.27571 1.29080 0.85871 0.80072 0.77879 0.78818 1.18320 1.22606 1.18088 1.21816 0.93618 0.98630 0.88144 1.21976 0.91982 0.84304 1.13687 1.43072 0.97713 1.01356 0.99950 1.94561 1.58368 1.65065 1.21057 1.94460 1.55952 1.64875 1.20913 0.91546 0.91883 0.83022 0.75888 0.74294 0.91801 0.89523 0.88146 0.92377 0.91834 0.94103 0.92366 0.93345 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.46 16 2 O -0.33 -4.67 9.92 -55.84 -0.55 -5.23 16 3 C 0.51 11.64 7.92 70.43 0.56 12.20 16 4 O -0.52 -16.52 14.51 24.98 0.36 -16.15 16 5 C -0.05 -1.04 5.90 -19.91 -0.12 -1.16 16 6 C -0.08 -0.77 9.70 22.65 0.22 -0.55 16 7 C 0.16 1.80 11.16 84.61 0.94 2.75 16 8 N -0.48 -11.19 9.70 -193.41 -1.88 -13.07 16 9 C 0.34 10.48 5.29 133.08 0.70 11.19 16 10 N -0.52 -18.98 4.35 -702.05 -3.05 -22.03 16 11 C 0.07 2.21 5.28 86.32 0.46 2.67 16 12 C -0.11 -3.76 6.09 30.64 0.19 -3.57 16 13 C -0.12 -5.07 4.74 30.67 0.15 -4.92 16 14 C 0.02 1.06 1.85 -11.49 -0.02 1.04 16 15 H 0.02 0.89 7.21 -2.39 -0.02 0.87 16 16 C -0.52 -30.25 9.15 25.60 0.23 -30.01 16 17 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 18 C 0.02 1.17 5.45 84.65 0.46 1.63 16 19 N -0.94 -59.75 13.96 21.45 0.30 -59.45 16 20 Si 0.95 46.49 24.35 68.60 1.67 48.16 16 21 H -0.26 -11.70 6.88 99.48 0.68 -11.02 16 22 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 23 H -0.26 -12.26 6.54 99.48 0.65 -11.61 16 24 C 0.10 4.38 4.47 86.33 0.39 4.76 16 25 C -0.03 -1.06 6.22 36.90 0.23 -0.83 16 26 N 0.05 1.95 2.31 -45.21 -0.10 1.85 16 27 O -0.17 -7.61 19.03 21.41 0.41 -7.20 16 28 O -0.13 -5.28 18.99 21.72 0.41 -4.86 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.15 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.22 0.00 7.71 -2.91 -0.02 -0.02 16 33 H 0.24 0.05 8.06 -2.91 -0.02 0.03 16 34 H 0.06 1.84 8.05 -2.39 -0.02 1.82 16 35 H 0.09 2.35 8.11 -2.38 -0.02 2.33 16 36 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.04 1.79 3.33 -2.39 -0.01 1.78 16 40 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 41 H 0.05 2.20 8.11 -2.39 -0.02 2.18 16 42 H 0.05 2.14 8.00 -2.39 -0.02 2.12 16 Total: -1.00 -84.77 355.15 4.13 -80.63 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: 0.98 Total: 0.70 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 5.58 Total: -3.35 kcal Atomic # 7 Polarization: -87.97 SS G_CDS: -4.73 Total: -92.70 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: 0.63 Total: -33.44 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.67 Total: 48.16 kcal Total: -84.77 4.13 -80.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598632704.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.737 kcal (2) G-P(sol) polarization free energy of solvation -84.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds