Wall clock time and date at job start Tue Mar 31 2020 19:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34670 * 116.99617 * 2 1 4 4 O 1.21428 * 120.00301 * 0.02562 * 3 2 1 5 5 C 1.48063 * 119.99667 * 180.02562 * 3 2 1 6 6 C 1.40049 * 120.88901 * 0.02562 * 5 3 2 7 7 C 1.37955 * 119.17441 * 179.97438 * 6 5 3 8 8 N 1.31918 * 121.00231 * 0.02590 * 7 6 5 9 9 C 1.32311 * 121.95869 * 359.97438 * 8 7 6 10 10 N 1.39021 * 119.64346 * 179.97438 * 9 8 7 11 11 C 1.46846 * 110.99926 * 36.70258 * 10 9 8 12 12 C 1.53039 * 109.52654 * 174.16055 * 11 10 9 13 13 C 1.53119 * 109.27859 * 59.17500 * 12 11 10 14 14 C 1.53121 * 109.16385 * 302.35224 * 13 12 11 15 15 H 1.09005 * 109.49609 * 297.67034 * 14 13 12 16 16 C 1.50693 * 109.50436 * 177.59150 * 14 13 12 17 17 H 1.08000 * 120.00117 * 239.99568 * 16 14 13 18 18 C 1.37880 * 120.00056 * 59.99966 * 16 14 13 19 19 N 1.31513 * 119.99841 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 120.00134 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.47054 * 90.00150 * 20 18 16 22 22 H 1.48502 * 109.47035 * 209.99417 * 20 18 16 23 23 H 1.48495 * 109.47340 * 329.99998 * 20 18 16 24 24 C 1.46850 * 111.00398 * 272.49260 * 10 9 8 25 25 C 1.39128 * 120.71692 * 359.97438 * 9 8 7 26 26 N 1.48019 * 120.53982 * 179.97438 * 25 9 8 27 27 O 1.21808 * 119.99548 * 268.48533 * 26 25 9 28 28 O 1.21791 * 119.99882 * 88.48506 * 26 25 9 29 29 H 1.08997 * 109.47313 * 59.99199 * 1 2 3 30 30 H 1.09002 * 109.47165 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47277 * 299.99209 * 1 2 3 32 32 H 1.08006 * 120.41487 * 0.02562 * 6 5 3 33 33 H 1.07996 * 119.49460 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.46427 * 294.17412 * 11 10 9 35 35 H 1.09004 * 109.46548 * 54.15619 * 11 10 9 36 36 H 1.08996 * 109.50308 * 179.12187 * 12 11 10 37 37 H 1.09005 * 109.50192 * 299.24045 * 12 11 10 38 38 H 1.09005 * 109.51783 * 62.25465 * 13 12 11 39 39 H 1.08991 * 109.52559 * 182.37706 * 13 12 11 40 40 H 0.97004 * 119.99994 * 180.02562 * 19 18 16 41 41 H 1.08999 * 109.46168 * 305.85587 * 24 10 9 42 42 H 1.08999 * 109.45608 * 65.82018 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.2000 0.0000 4 8 1.4020 2.2183 0.0005 5 6 3.5419 1.2775 -0.0006 6 6 4.3228 0.1149 -0.0017 7 6 5.6977 0.2283 -0.0027 8 7 6.2819 1.4111 -0.0022 9 6 5.5856 2.5361 -0.0011 10 7 6.2512 3.7567 -0.0001 11 6 7.4680 3.6932 -0.8196 12 6 8.0943 5.0864 -0.9141 13 6 8.4300 5.5864 0.4937 14 6 7.1545 5.5970 1.3408 15 1 6.4346 6.2904 0.9058 16 6 7.4866 6.0316 2.7449 17 1 7.2873 5.3713 3.5760 18 6 8.0448 7.2723 2.9687 19 7 8.2879 8.0762 1.9567 20 14 8.4559 7.8113 4.7094 21 1 9.8448 7.4020 5.0394 22 1 8.3378 9.2881 4.8111 23 1 7.5122 7.1724 5.6614 24 6 6.5556 4.1890 1.3699 25 6 4.1946 2.5109 -0.0011 26 7 3.4195 3.7720 0.0006 27 8 3.0769 4.2747 1.0559 28 8 3.1243 4.3067 -1.0530 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 3.8545 -0.8583 -0.0025 33 1 6.3049 -0.6648 -0.0031 34 1 8.1791 3.0058 -0.3613 35 1 7.2147 3.3405 -1.8194 36 1 9.0059 5.0360 -1.5095 37 1 7.3889 5.7713 -1.3849 38 1 9.1649 4.9232 0.9501 39 1 8.8374 6.5955 0.4343 40 1 8.6810 8.9490 2.1141 41 1 5.6394 4.1962 1.9605 42 1 7.2708 3.4992 1.8178 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598632705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:52 Heat of formation + Delta-G solvation = -28.137467 kcal Electronic energy + Delta-G solvation = -29942.859517 eV Core-core repulsion = 25699.352556 eV Total energy + Delta-G solvation = -4243.506961 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.20467 -40.94871 -40.49943 -38.23356 -37.06723 -36.04256 -34.35916 -33.54068 -32.35957 -30.38352 -30.02734 -28.53794 -26.73843 -25.45896 -25.05971 -23.63697 -22.58204 -21.83987 -21.24973 -19.29167 -18.95540 -18.60077 -18.35866 -17.95967 -17.26426 -16.95238 -16.75472 -15.93705 -15.72385 -15.27113 -15.15932 -14.52795 -14.26662 -14.06648 -13.90417 -13.63428 -13.37967 -12.86104 -12.63575 -12.57217 -12.52344 -11.89487 -11.43683 -11.34814 -11.27253 -11.07971 -10.96709 -10.87216 -10.82422 -10.72723 -10.62454 -10.35186 -10.22978 -10.02016 -9.88248 -9.54674 -9.26228 -8.86385 -8.48317 -8.30361 -6.01144 -4.08070 -0.30755 0.24445 0.94852 1.45936 1.85976 1.89671 2.94986 3.30734 3.32553 3.38350 3.42480 3.76991 3.87816 4.14735 4.38875 4.43311 4.50863 4.65581 4.76156 4.92031 5.05753 5.10353 5.29067 5.37522 5.54840 5.63795 5.66217 5.84996 5.99294 6.10748 6.28065 6.48335 6.55886 6.60522 6.70075 6.82067 7.00172 7.11852 7.15095 7.28360 7.42430 7.70405 7.95501 7.96774 8.06964 8.36561 8.93868 9.56548 11.05157 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016237 B = 0.003547 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.999528 B = 7891.796326 C = 8493.268603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.345 6.345 3 C 0.503 3.497 4 O -0.472 6.472 5 C -0.026 4.026 6 C -0.134 4.134 7 C 0.147 3.853 8 N -0.473 5.473 9 C 0.368 3.632 10 N -0.495 5.495 11 C 0.070 3.930 12 C -0.120 4.120 13 C -0.113 4.113 14 C 0.058 3.942 15 H 0.039 0.961 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.894 3.106 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.070 3.930 25 C -0.022 4.022 26 N 0.045 4.955 27 O -0.123 6.123 28 O -0.125 6.125 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.170 0.830 33 H 0.183 0.817 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.035 0.965 39 H 0.097 0.903 40 H 0.261 0.739 41 H 0.068 0.932 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.734 -20.602 -6.500 23.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.261 6.261 3 C 0.344 3.656 4 O -0.358 6.358 5 C -0.036 4.036 6 C -0.155 4.155 7 C -0.013 4.013 8 N -0.188 5.188 9 C 0.138 3.862 10 N -0.217 5.217 11 C -0.056 4.056 12 C -0.158 4.158 13 C -0.151 4.151 14 C 0.039 3.961 15 H 0.057 0.943 16 C -0.555 4.555 17 H 0.073 0.927 18 C -0.136 4.136 19 N -0.524 5.524 20 Si 0.722 3.278 21 H -0.208 1.208 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.053 4.053 25 C -0.108 4.108 26 N 0.578 4.422 27 O -0.348 6.348 28 O -0.350 6.350 29 H 0.088 0.912 30 H 0.127 0.873 31 H 0.088 0.912 32 H 0.187 0.813 33 H 0.200 0.800 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.884 -20.309 -6.730 22.801 hybrid contribution -0.560 -0.076 1.181 1.310 sum -8.444 -20.385 -5.548 22.751 Atomic orbital electron populations 1.23444 0.74502 1.04364 1.03413 1.86478 1.24627 1.31027 1.83998 1.20766 0.88011 0.82577 0.74237 1.91017 1.66118 1.35668 1.42982 1.19084 0.91119 0.92041 1.01377 1.22447 0.94730 0.98395 0.99895 1.23113 0.92132 0.95750 0.90284 1.68224 1.39849 0.98203 1.12482 1.19818 0.87078 0.90735 0.88603 1.60206 1.27348 1.17589 1.16520 1.22105 0.88732 0.99491 0.95311 1.21746 0.99103 0.94299 1.00611 1.21714 0.99417 1.02809 0.91159 1.18702 0.93253 0.88078 0.96026 0.94252 1.21007 1.41662 1.01087 0.91791 0.92668 1.24908 0.95412 0.96316 0.96986 1.69878 1.43427 1.09085 1.30006 0.86564 0.78600 0.77851 0.84818 1.20763 1.21116 1.19851 1.22689 1.00081 1.00802 0.81717 1.21774 0.92112 0.85251 1.11709 1.42650 0.98356 1.00426 1.00734 1.94583 1.55018 1.64638 1.20549 1.94521 1.57086 1.62419 1.20977 0.91233 0.87254 0.91168 0.81296 0.80012 0.92733 0.91963 0.92412 0.91719 0.94647 0.88472 0.92871 0.91323 0.93949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.27 9.92 -40.41 -0.40 -3.67 16 3 C 0.50 6.61 7.92 34.76 0.28 6.89 16 4 O -0.47 -7.86 14.51 -24.34 -0.35 -8.22 16 5 C -0.03 -0.34 5.90 -104.70 -0.62 -0.96 16 6 C -0.13 -1.15 9.70 -39.01 -0.38 -1.53 16 7 C 0.15 1.32 11.16 -17.62 -0.20 1.12 16 8 N -0.47 -6.51 9.22 -12.48 -0.12 -6.63 16 9 C 0.37 6.20 5.57 -155.08 -0.86 5.34 16 10 N -0.49 -9.59 4.35 -173.25 -0.75 -10.34 16 11 C 0.07 1.23 4.93 -3.83 -0.02 1.21 16 12 C -0.12 -2.29 6.09 -26.65 -0.16 -2.45 16 13 C -0.11 -2.61 5.02 -26.61 -0.13 -2.75 16 14 C 0.06 1.46 2.26 -91.70 -0.21 1.25 16 15 H 0.04 1.12 8.14 -51.93 -0.42 0.69 16 16 C -0.52 -14.15 8.56 -34.44 -0.29 -14.45 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 19 N -0.89 -25.15 11.35 55.43 0.63 -24.52 16 20 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.07 1.53 4.62 -3.83 -0.02 1.51 16 25 C -0.02 -0.38 6.22 -79.13 -0.49 -0.87 16 26 N 0.04 0.90 2.32 34.36 0.08 0.98 16 27 O -0.12 -2.67 18.93 -32.85 -0.62 -3.29 16 28 O -0.13 -2.61 19.09 -31.61 -0.60 -3.22 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.17 0.81 7.71 -52.48 -0.40 0.40 16 33 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.05 0.94 7.80 -51.93 -0.40 0.53 16 35 H 0.06 1.00 8.11 -51.93 -0.42 0.57 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.10 2.51 6.15 -51.93 -0.32 2.19 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.07 1.56 8.10 -51.93 -0.42 1.14 16 42 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -33.23 361.46 -9.16 -42.39 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -5.32 Total: -2.57 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -2.14 Total: -2.65 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: -0.16 Total: -40.50 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -1.98 Total: -18.40 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.23 -9.16 -42.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598632705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.254 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds