Wall clock time and date at job start Tue Mar 31 2020 19:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34670 * 116.99617 * 2 1 4 4 O 1.21428 * 120.00301 * 0.02562 * 3 2 1 5 5 C 1.48063 * 119.99667 * 180.02562 * 3 2 1 6 6 C 1.40049 * 120.88901 * 0.02562 * 5 3 2 7 7 C 1.37955 * 119.17441 * 179.97438 * 6 5 3 8 8 N 1.31918 * 121.00231 * 0.02590 * 7 6 5 9 9 C 1.32311 * 121.95869 * 359.97438 * 8 7 6 10 10 N 1.39021 * 119.64346 * 179.97438 * 9 8 7 11 11 C 1.46846 * 110.99926 * 36.70258 * 10 9 8 12 12 C 1.53039 * 109.52654 * 174.16055 * 11 10 9 13 13 C 1.53119 * 109.27859 * 59.17500 * 12 11 10 14 14 C 1.53121 * 109.16385 * 302.35224 * 13 12 11 15 15 H 1.09005 * 109.49609 * 297.67034 * 14 13 12 16 16 C 1.50693 * 109.50436 * 177.59150 * 14 13 12 17 17 H 1.08000 * 120.00117 * 239.99568 * 16 14 13 18 18 C 1.37880 * 120.00056 * 59.99966 * 16 14 13 19 19 N 1.31513 * 119.99841 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 120.00134 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.47054 * 90.00150 * 20 18 16 22 22 H 1.48502 * 109.47035 * 209.99417 * 20 18 16 23 23 H 1.48495 * 109.47340 * 329.99998 * 20 18 16 24 24 C 1.46850 * 111.00398 * 272.49260 * 10 9 8 25 25 C 1.39128 * 120.71692 * 359.97438 * 9 8 7 26 26 N 1.48019 * 120.53982 * 179.97438 * 25 9 8 27 27 O 1.21808 * 119.99548 * 268.48533 * 26 25 9 28 28 O 1.21791 * 119.99882 * 88.48506 * 26 25 9 29 29 H 1.08997 * 109.47313 * 59.99199 * 1 2 3 30 30 H 1.09002 * 109.47165 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47277 * 299.99209 * 1 2 3 32 32 H 1.08006 * 120.41487 * 0.02562 * 6 5 3 33 33 H 1.07996 * 119.49460 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.46427 * 294.17412 * 11 10 9 35 35 H 1.09004 * 109.46548 * 54.15619 * 11 10 9 36 36 H 1.08996 * 109.50308 * 179.12187 * 12 11 10 37 37 H 1.09005 * 109.50192 * 299.24045 * 12 11 10 38 38 H 1.09005 * 109.51783 * 62.25465 * 13 12 11 39 39 H 1.08991 * 109.52559 * 182.37706 * 13 12 11 40 40 H 0.97004 * 119.99994 * 180.02562 * 19 18 16 41 41 H 1.08999 * 109.46168 * 305.85587 * 24 10 9 42 42 H 1.08999 * 109.45608 * 65.82018 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.2000 0.0000 4 8 1.4020 2.2183 0.0005 5 6 3.5419 1.2775 -0.0006 6 6 4.3228 0.1149 -0.0017 7 6 5.6977 0.2283 -0.0027 8 7 6.2819 1.4111 -0.0022 9 6 5.5856 2.5361 -0.0011 10 7 6.2512 3.7567 -0.0001 11 6 7.4680 3.6932 -0.8196 12 6 8.0943 5.0864 -0.9141 13 6 8.4300 5.5864 0.4937 14 6 7.1545 5.5970 1.3408 15 1 6.4346 6.2904 0.9058 16 6 7.4866 6.0316 2.7449 17 1 7.2873 5.3713 3.5760 18 6 8.0448 7.2723 2.9687 19 7 8.2879 8.0762 1.9567 20 14 8.4559 7.8113 4.7094 21 1 9.8448 7.4020 5.0394 22 1 8.3378 9.2881 4.8111 23 1 7.5122 7.1724 5.6614 24 6 6.5556 4.1890 1.3699 25 6 4.1946 2.5109 -0.0011 26 7 3.4195 3.7720 0.0006 27 8 3.0769 4.2747 1.0559 28 8 3.1243 4.3067 -1.0530 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 3.8545 -0.8583 -0.0025 33 1 6.3049 -0.6648 -0.0031 34 1 8.1791 3.0058 -0.3613 35 1 7.2147 3.3405 -1.8194 36 1 9.0059 5.0360 -1.5095 37 1 7.3889 5.7713 -1.3849 38 1 9.1649 4.9232 0.9501 39 1 8.8374 6.5955 0.4343 40 1 8.6810 8.9490 2.1141 41 1 5.6394 4.1962 1.9605 42 1 7.2708 3.4992 1.8178 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598632705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:51 Heat of formation + Delta-G solvation = -48.744621 kcal Electronic energy + Delta-G solvation = -29943.753110 eV Core-core repulsion = 25699.352556 eV Total energy + Delta-G solvation = -4244.400554 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.50249 -42.12903 -41.57905 -39.66277 -37.98550 -37.59667 -36.01095 -34.66097 -34.05314 -31.94033 -31.62232 -29.28161 -27.91240 -27.07218 -26.59302 -25.02830 -23.76417 -23.42727 -22.50565 -20.71633 -20.48823 -19.88130 -19.68137 -19.18397 -18.57313 -18.19923 -17.83402 -17.44613 -16.99784 -16.68729 -16.28709 -16.03536 -15.50550 -15.26877 -15.08668 -14.72040 -14.62564 -14.44785 -14.22681 -14.15984 -13.52891 -13.22808 -12.88651 -12.85520 -12.79555 -12.66245 -12.49946 -12.39977 -12.26615 -12.09624 -11.98695 -11.94930 -11.79561 -11.61307 -11.43804 -11.10588 -10.86602 -10.81375 -10.43424 -9.84243 -8.12893 -6.28117 -1.30172 -0.76587 -0.64240 0.16985 0.91835 0.98092 1.39624 1.41690 1.51789 1.97508 2.14240 2.42458 2.88440 2.93517 3.14553 3.16639 3.30109 3.62105 3.93764 4.00571 4.07453 4.16200 4.19144 4.22610 4.34768 4.41374 4.49481 4.62460 4.68738 4.73711 4.84795 4.85195 4.91753 4.96294 5.10658 5.17023 5.36348 5.54703 5.57414 5.84438 5.91831 6.06369 6.09007 6.21383 6.29174 6.33441 6.80772 7.39970 8.92362 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016237 B = 0.003547 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.999528 B = 7891.796326 C = 8493.268603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.327 6.327 3 C 0.505 3.495 4 O -0.520 6.520 5 C -0.043 4.043 6 C -0.084 4.084 7 C 0.167 3.833 8 N -0.481 5.481 9 C 0.347 3.653 10 N -0.517 5.517 11 C 0.078 3.922 12 C -0.112 4.112 13 C -0.103 4.103 14 C 0.058 3.942 15 H -0.010 1.010 16 C -0.540 4.540 17 H 0.052 0.948 18 C 0.017 3.983 19 N -0.913 5.913 20 Si 0.958 3.042 21 H -0.269 1.269 22 H -0.283 1.283 23 H -0.271 1.271 24 C 0.093 3.907 25 C -0.050 4.050 26 N 0.050 4.950 27 O -0.174 6.174 28 O -0.141 6.141 29 H 0.064 0.936 30 H 0.153 0.847 31 H 0.062 0.938 32 H 0.224 0.776 33 H 0.245 0.755 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.036 0.964 39 H 0.065 0.935 40 H 0.263 0.737 41 H 0.046 0.954 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.952 -25.621 -6.764 27.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.242 6.242 3 C 0.348 3.652 4 O -0.409 6.409 5 C -0.053 4.053 6 C -0.104 4.104 7 C 0.007 3.993 8 N -0.195 5.195 9 C 0.118 3.882 10 N -0.239 5.239 11 C -0.047 4.047 12 C -0.150 4.150 13 C -0.141 4.141 14 C 0.039 3.961 15 H 0.008 0.992 16 C -0.578 4.578 17 H 0.070 0.930 18 C -0.182 4.182 19 N -0.551 5.551 20 Si 0.784 3.216 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.196 1.196 24 C -0.031 4.031 25 C -0.136 4.136 26 N 0.578 4.422 27 O -0.390 6.390 28 O -0.368 6.368 29 H 0.083 0.917 30 H 0.171 0.829 31 H 0.081 0.919 32 H 0.241 0.759 33 H 0.261 0.739 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.118 -25.341 -6.957 27.226 hybrid contribution -0.875 1.203 1.193 1.907 sum -7.993 -24.138 -5.764 26.072 Atomic orbital electron populations 1.23814 0.72758 1.06994 1.02920 1.86474 1.26153 1.28586 1.82989 1.20917 0.88146 0.82958 0.73143 1.91010 1.67075 1.37446 1.45378 1.19365 0.91591 0.91878 1.02498 1.23171 0.94305 0.98633 0.94316 1.24229 0.92932 0.95661 0.86520 1.68249 1.39794 0.98669 1.12811 1.19519 0.86577 0.90888 0.91193 1.59912 1.28296 1.20674 1.15033 1.22057 0.88298 0.98111 0.96260 1.21650 1.00192 0.95128 0.98051 1.21479 0.98011 1.01180 0.93451 1.18562 0.93222 0.89188 0.95146 0.99203 1.21363 1.41904 1.01654 0.92896 0.93002 1.25719 0.95237 0.96333 1.00943 1.70026 1.43855 1.09296 1.31942 0.85552 0.78763 0.77319 0.80009 1.19473 1.20838 1.19570 1.22145 0.98585 0.98753 0.83647 1.21909 0.92014 0.84185 1.15522 1.43141 0.97748 1.01447 0.99850 1.94554 1.57053 1.66507 1.20934 1.94463 1.57517 1.63726 1.21095 0.91674 0.82886 0.91913 0.75893 0.73901 0.91704 0.89734 0.89350 0.93607 0.94501 0.91655 0.92823 0.93581 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.33 -5.13 9.92 -55.79 -0.55 -5.69 16 3 C 0.51 12.66 7.92 70.43 0.56 13.22 16 4 O -0.52 -17.90 14.51 24.97 0.36 -17.53 16 5 C -0.04 -1.03 5.90 -19.91 -0.12 -1.15 16 6 C -0.08 -0.95 9.70 22.64 0.22 -0.73 16 7 C 0.17 1.93 11.16 84.61 0.94 2.87 16 8 N -0.48 -11.48 9.22 -193.41 -1.78 -13.26 16 9 C 0.35 11.39 5.57 133.08 0.74 12.13 16 10 N -0.52 -20.47 4.35 -702.05 -3.05 -23.52 16 11 C 0.08 2.69 4.93 86.33 0.43 3.12 16 12 C -0.11 -4.36 6.09 30.65 0.19 -4.17 16 13 C -0.10 -4.96 5.02 30.67 0.15 -4.81 16 14 C 0.06 3.08 2.26 -11.49 -0.03 3.06 16 15 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 16 C -0.54 -30.98 8.56 25.60 0.22 -30.76 16 17 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 18 C 0.02 0.97 5.30 84.66 0.45 1.42 16 19 N -0.91 -54.10 11.35 21.45 0.24 -53.85 16 20 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 24 C 0.09 4.25 4.62 86.32 0.40 4.65 16 25 C -0.05 -1.70 6.22 36.91 0.23 -1.48 16 26 N 0.05 2.15 2.32 -45.20 -0.10 2.04 16 27 O -0.17 -8.25 18.93 22.11 0.42 -7.83 16 28 O -0.14 -6.31 19.09 20.95 0.40 -5.91 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.15 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.22 0.19 7.71 -2.91 -0.02 0.17 16 33 H 0.25 -0.08 8.06 -2.91 -0.02 -0.10 16 34 H 0.06 2.09 7.80 -2.39 -0.02 2.07 16 35 H 0.08 2.54 8.11 -2.38 -0.02 2.52 16 36 H 0.09 2.85 8.14 -2.39 -0.02 2.84 16 37 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.06 3.55 6.15 -2.39 -0.01 3.54 16 40 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 41 H 0.05 2.25 8.10 -2.39 -0.02 2.23 16 42 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -82.85 361.46 4.59 -78.25 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: 1.05 Total: 1.62 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 5.58 Total: -1.12 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -4.70 Total: -88.59 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: 0.63 Total: -36.96 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -82.85 4.59 -78.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598632705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.510 kcal (2) G-P(sol) polarization free energy of solvation -82.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds