Wall clock time and date at job start Tue Mar 31 2020 19:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34233 * 116.99928 * 2 1 4 4 O 1.20832 * 119.99719 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00501 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.39213 * 59.80207 * 5 3 2 7 7 C 1.52890 * 109.31496 * 179.55965 * 5 3 2 8 8 N 1.47156 * 108.51146 * 170.56189 * 7 5 3 9 9 C 1.46906 * 111.00084 * 165.35808 * 8 7 5 10 10 C 1.52996 * 109.47286 * 189.99927 * 9 8 7 11 11 C 1.53003 * 109.47286 * 179.97438 * 10 9 8 12 12 S 1.81002 * 109.47137 * 180.02562 * 11 10 9 13 13 C 1.76204 * 99.99737 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00060 * 359.97438 * 13 12 11 15 15 C 1.38798 * 119.99562 * 179.97438 * 13 12 11 16 16 N 1.31629 * 120.00241 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99788 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47247 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47284 * 119.99923 * 17 15 13 20 20 H 1.48501 * 109.47696 * 240.00354 * 17 15 13 21 21 C 1.46636 * 110.27468 * 288.78953 * 8 7 5 22 22 C 1.50621 * 110.49458 * 52.53655 * 21 8 7 23 23 C 1.38733 * 118.42916 * 162.53015 * 22 21 8 24 24 C 1.38008 * 120.37650 * 179.51458 * 23 22 21 25 25 C 1.38262 * 119.87093 * 0.02562 * 24 23 22 26 26 C 1.38037 * 119.82694 * 0.11129 * 25 24 23 27 27 C 1.37835 * 121.84653 * 342.25068 * 22 21 8 28 28 H 1.08999 * 109.47661 * 60.00073 * 1 2 3 29 29 H 1.09003 * 109.46818 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47220 * 299.99755 * 1 2 3 31 31 H 1.08998 * 109.63059 * 290.26800 * 7 5 3 32 32 H 1.09000 * 109.63123 * 50.85458 * 7 5 3 33 33 H 1.09000 * 109.46795 * 310.00011 * 9 8 7 34 34 H 1.09003 * 109.47023 * 69.99675 * 9 8 7 35 35 H 1.08999 * 109.47680 * 300.00131 * 10 9 8 36 36 H 1.09003 * 109.47296 * 59.99915 * 10 9 8 37 37 H 1.09000 * 109.47070 * 300.00254 * 11 10 9 38 38 H 1.09002 * 109.46279 * 60.00166 * 11 10 9 39 39 H 0.97005 * 119.99741 * 180.02562 * 16 15 13 40 40 H 1.08999 * 109.27820 * 292.26742 * 21 8 7 41 41 H 1.08997 * 109.26130 * 172.79004 * 21 8 7 42 42 H 1.07998 * 119.80785 * 359.48574 * 23 22 21 43 43 H 1.07996 * 120.06685 * 180.02562 * 24 23 22 44 44 H 1.08000 * 120.08525 * 180.12668 * 25 24 23 45 45 H 1.08000 * 119.82373 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9544 0.7778 -0.8895 7 6 3.9955 2.7424 -0.0115 8 7 5.4479 2.8059 0.2168 9 6 5.9765 4.1340 -0.1223 10 6 7.5059 4.0917 -0.1132 11 6 8.0565 5.4747 -0.4671 12 16 9.8658 5.4244 -0.4570 13 6 10.2206 7.0968 -0.8836 14 1 9.4132 7.7921 -1.0600 15 6 11.5378 7.5205 -0.9930 16 7 12.5218 6.6730 -0.7786 17 14 11.9140 9.2933 -1.4460 18 1 10.6424 10.0368 -1.6340 19 1 12.7005 9.9262 -0.3570 20 1 12.6983 9.3265 -2.7066 21 6 5.7596 2.4555 1.6061 22 6 5.1294 1.1372 1.9716 23 6 5.6007 0.4677 3.0915 24 6 5.0455 -0.7382 3.4688 25 6 4.0141 -1.2835 2.7270 26 6 3.5458 -0.6201 1.6108 27 6 4.1036 0.5911 1.2303 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.7570 3.1865 -0.9780 32 1 3.4763 3.2818 0.7807 33 1 5.6269 4.4218 -1.1138 34 1 5.6288 4.8616 0.6110 35 1 7.8556 3.8038 0.8782 36 1 7.8536 3.3641 -0.8466 37 1 7.7068 5.7621 -1.4586 38 1 7.7087 6.2025 0.2661 39 1 13.4424 6.9693 -0.8548 40 1 5.3774 3.2327 2.2678 41 1 6.8407 2.3825 1.7246 42 1 6.4069 0.8924 3.6711 43 1 5.4161 -1.2549 4.3418 44 1 3.5757 -2.2260 3.0203 45 1 2.7398 -1.0459 1.0316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599681993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:10 Heat of formation + Delta-G solvation = -63.757870 kcal Electronic energy + Delta-G solvation = -25817.993349 eV Core-core repulsion = 22119.234986 eV Total energy + Delta-G solvation = -3698.758363 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.35980 -39.85525 -37.77855 -36.81980 -34.31081 -32.79881 -32.41245 -31.23385 -29.61857 -28.19993 -26.45328 -25.58578 -24.97248 -23.09978 -22.74847 -21.58242 -20.68618 -19.68686 -18.14224 -17.45659 -17.27858 -17.04619 -16.28690 -16.09539 -15.72687 -14.96883 -14.79755 -14.79117 -14.53017 -14.11658 -13.96142 -13.70929 -13.66019 -13.32425 -13.05439 -12.83640 -12.80213 -12.55225 -12.29285 -12.01992 -11.76278 -11.68188 -11.38845 -11.21542 -11.07382 -10.98813 -10.92745 -10.85830 -10.73494 -10.59183 -10.30949 -9.52606 -9.05484 -9.03506 -8.87397 -8.43343 -8.28098 -6.51185 -6.21783 -3.91658 1.05881 1.16888 1.84613 2.28291 3.21745 3.22855 3.30730 3.49254 3.55298 3.82054 4.15859 4.23663 4.30272 4.57056 4.63988 4.71787 4.80169 4.84436 4.88648 4.96353 5.10128 5.14374 5.15445 5.22241 5.31052 5.32814 5.35379 5.43666 5.52722 5.58822 5.65269 5.72082 5.81003 5.83875 5.88739 5.98764 6.04870 6.21431 6.30816 6.31664 6.37534 6.58545 6.71830 6.77857 6.87497 6.97972 7.36040 7.62132 8.38152 9.24760 10.86406 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.020041 B = 0.002147 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.804590 B =13040.730753 C =14174.598134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.354 6.354 3 C 0.473 3.527 4 O -0.501 6.501 5 C -0.032 4.032 6 H 0.129 0.871 7 C 0.067 3.933 8 N -0.530 5.530 9 C 0.061 3.939 10 C -0.094 4.094 11 C -0.113 4.113 12 S -0.132 6.132 13 C -0.515 4.515 14 H 0.073 0.927 15 C 0.070 3.930 16 N -0.869 5.869 17 Si 0.918 3.082 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.084 3.916 22 C -0.059 4.059 23 C -0.118 4.118 24 C -0.113 4.113 25 C -0.125 4.125 26 C -0.116 4.116 27 C -0.079 4.079 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.266 0.734 40 H 0.052 0.948 41 H 0.101 0.899 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.796 -17.191 5.624 29.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.271 6.271 3 C 0.315 3.685 4 O -0.388 6.388 5 C -0.051 4.051 6 H 0.146 0.854 7 C -0.062 4.062 8 N -0.254 5.254 9 C -0.068 4.068 10 C -0.132 4.132 11 C -0.262 4.262 12 S 0.096 5.904 13 C -0.663 4.663 14 H 0.091 0.909 15 C -0.139 4.139 16 N -0.505 5.505 17 Si 0.745 3.255 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.043 4.043 22 C -0.059 4.059 23 C -0.136 4.136 24 C -0.131 4.131 25 C -0.143 4.143 26 C -0.134 4.134 27 C -0.079 4.079 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.119 0.881 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -21.887 -18.097 5.528 28.933 hybrid contribution -1.118 2.697 -0.012 2.920 sum -23.005 -15.399 5.516 28.227 Atomic orbital electron populations 1.23307 0.76403 1.03801 1.02690 1.86522 1.23405 1.33185 1.83986 1.23570 0.91531 0.81431 0.71926 1.90684 1.66983 1.36255 1.44884 1.19960 0.86353 0.99010 0.99815 0.85358 1.21956 0.88549 0.92593 1.03063 1.62176 1.11527 1.29734 1.21962 1.22256 0.96376 0.87148 1.01023 1.21281 0.92267 0.97004 1.02693 1.23232 1.02226 0.98213 1.02549 1.84634 0.96297 1.17770 1.91695 1.22734 0.94788 0.94666 1.54131 0.90931 1.25019 0.95279 0.98645 0.94929 1.70034 0.99358 1.34540 1.46592 0.86116 0.78446 0.82786 0.78194 1.19627 1.20606 1.20572 1.21136 1.01567 0.92900 0.88711 1.19599 0.95314 0.96253 0.94723 1.21067 1.00432 0.95505 0.96615 1.21131 0.96486 0.95727 0.99756 1.21083 0.97488 1.00064 0.95714 1.21562 1.00269 0.94286 0.97280 1.19012 0.97458 0.95746 0.95689 0.91758 0.87964 0.91847 0.89187 0.93003 0.90287 0.94443 0.91638 0.90574 0.92071 0.92322 0.92384 0.92976 0.88116 0.85532 0.85886 0.85993 0.84174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.55 101.05 1.07 1.26 16 2 O -0.35 -3.06 7.67 -39.26 -0.30 -3.36 16 3 C 0.47 5.00 7.06 36.00 0.25 5.25 16 4 O -0.50 -6.52 15.56 -18.75 -0.29 -6.81 16 5 C -0.03 -0.33 2.93 -92.97 -0.27 -0.60 16 6 H 0.13 1.18 8.14 -51.93 -0.42 0.75 16 7 C 0.07 0.75 4.28 -3.74 -0.02 0.73 16 8 N -0.53 -6.44 4.68 -236.20 -1.10 -7.54 16 9 C 0.06 0.79 4.95 -3.82 -0.02 0.77 16 10 C -0.09 -1.49 5.16 -26.73 -0.14 -1.63 16 11 C -0.11 -2.25 5.67 37.16 0.21 -2.04 16 12 S -0.13 -3.45 21.44 -107.50 -2.30 -5.76 16 13 C -0.51 -14.79 9.50 30.94 0.29 -14.49 16 14 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 15 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16 16 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 17 Si 0.92 21.61 29.55 -169.99 -5.02 16.58 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.08 0.97 4.91 -5.16 -0.03 0.95 16 22 C -0.06 -0.65 5.79 -104.62 -0.61 -1.26 16 23 C -0.12 -1.16 9.65 -39.48 -0.38 -1.54 16 24 C -0.11 -0.99 10.05 -39.66 -0.40 -1.38 16 25 C -0.13 -1.08 10.05 -39.65 -0.40 -1.48 16 26 C -0.12 -1.11 9.00 -39.50 -0.36 -1.46 16 27 C -0.08 -0.84 5.44 -104.60 -0.57 -1.41 16 28 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 29 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16 31 H 0.09 0.96 7.85 -51.93 -0.41 0.55 16 32 H 0.05 0.63 7.70 -51.93 -0.40 0.23 16 33 H 0.08 0.99 7.89 -51.93 -0.41 0.58 16 34 H 0.04 0.48 8.06 -51.93 -0.42 0.06 16 35 H 0.06 1.04 6.66 -51.93 -0.35 0.69 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 38 H 0.06 1.16 8.14 -51.92 -0.42 0.73 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.05 0.59 8.07 -51.93 -0.42 0.17 16 41 H 0.10 1.18 6.65 -51.93 -0.35 0.84 16 42 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 45 H 0.14 1.18 5.34 -52.49 -0.28 0.90 16 LS Contribution 379.40 15.07 5.72 5.72 Total: -1.00 -33.02 379.40 -10.82 -43.84 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.80 Total: -0.96 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -1.45 Total: -16.43 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: -0.37 Total: -32.83 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.59 Total: -10.17 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -2.30 Total: -5.76 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.02 -10.82 -43.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599681993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.916 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds