Wall clock time and date at job start Tue Mar 31 2020 19:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34233 * 116.99928 * 2 1 4 4 O 1.20832 * 119.99719 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00501 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.39213 * 59.80207 * 5 3 2 7 7 C 1.52890 * 109.31496 * 179.55965 * 5 3 2 8 8 N 1.47156 * 108.51146 * 170.56189 * 7 5 3 9 9 C 1.46906 * 111.00084 * 165.35808 * 8 7 5 10 10 C 1.52996 * 109.47286 * 189.99927 * 9 8 7 11 11 C 1.53003 * 109.47286 * 179.97438 * 10 9 8 12 12 S 1.81002 * 109.47137 * 180.02562 * 11 10 9 13 13 C 1.76204 * 99.99737 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00060 * 359.97438 * 13 12 11 15 15 C 1.38798 * 119.99562 * 179.97438 * 13 12 11 16 16 N 1.31629 * 120.00241 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99788 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47247 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47284 * 119.99923 * 17 15 13 20 20 H 1.48501 * 109.47696 * 240.00354 * 17 15 13 21 21 C 1.46636 * 110.27468 * 288.78953 * 8 7 5 22 22 C 1.50621 * 110.49458 * 52.53655 * 21 8 7 23 23 C 1.38733 * 118.42916 * 162.53015 * 22 21 8 24 24 C 1.38008 * 120.37650 * 179.51458 * 23 22 21 25 25 C 1.38262 * 119.87093 * 0.02562 * 24 23 22 26 26 C 1.38037 * 119.82694 * 0.11129 * 25 24 23 27 27 C 1.37835 * 121.84653 * 342.25068 * 22 21 8 28 28 H 1.08999 * 109.47661 * 60.00073 * 1 2 3 29 29 H 1.09003 * 109.46818 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47220 * 299.99755 * 1 2 3 31 31 H 1.08998 * 109.63059 * 290.26800 * 7 5 3 32 32 H 1.09000 * 109.63123 * 50.85458 * 7 5 3 33 33 H 1.09000 * 109.46795 * 310.00011 * 9 8 7 34 34 H 1.09003 * 109.47023 * 69.99675 * 9 8 7 35 35 H 1.08999 * 109.47680 * 300.00131 * 10 9 8 36 36 H 1.09003 * 109.47296 * 59.99915 * 10 9 8 37 37 H 1.09000 * 109.47070 * 300.00254 * 11 10 9 38 38 H 1.09002 * 109.46279 * 60.00166 * 11 10 9 39 39 H 0.97005 * 119.99741 * 180.02562 * 16 15 13 40 40 H 1.08999 * 109.27820 * 292.26742 * 21 8 7 41 41 H 1.08997 * 109.26130 * 172.79004 * 21 8 7 42 42 H 1.07998 * 119.80785 * 359.48574 * 23 22 21 43 43 H 1.07996 * 120.06685 * 180.02562 * 24 23 22 44 44 H 1.08000 * 120.08525 * 180.12668 * 25 24 23 45 45 H 1.08000 * 119.82373 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9544 0.7778 -0.8895 7 6 3.9955 2.7424 -0.0115 8 7 5.4479 2.8059 0.2168 9 6 5.9765 4.1340 -0.1223 10 6 7.5059 4.0917 -0.1132 11 6 8.0565 5.4747 -0.4671 12 16 9.8658 5.4244 -0.4570 13 6 10.2206 7.0968 -0.8836 14 1 9.4132 7.7921 -1.0600 15 6 11.5378 7.5205 -0.9930 16 7 12.5218 6.6730 -0.7786 17 14 11.9140 9.2933 -1.4460 18 1 10.6424 10.0368 -1.6340 19 1 12.7005 9.9262 -0.3570 20 1 12.6983 9.3265 -2.7066 21 6 5.7596 2.4555 1.6061 22 6 5.1294 1.1372 1.9716 23 6 5.6007 0.4677 3.0915 24 6 5.0455 -0.7382 3.4688 25 6 4.0141 -1.2835 2.7270 26 6 3.5458 -0.6201 1.6108 27 6 4.1036 0.5911 1.2303 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.7570 3.1865 -0.9780 32 1 3.4763 3.2818 0.7807 33 1 5.6269 4.4218 -1.1138 34 1 5.6288 4.8616 0.6110 35 1 7.8556 3.8038 0.8782 36 1 7.8536 3.3641 -0.8466 37 1 7.7068 5.7621 -1.4586 38 1 7.7087 6.2025 0.2661 39 1 13.4424 6.9693 -0.8548 40 1 5.3774 3.2327 2.2678 41 1 6.8407 2.3825 1.7246 42 1 6.4069 0.8924 3.6711 43 1 5.4161 -1.2549 4.3418 44 1 3.5757 -2.2260 3.0203 45 1 2.7398 -1.0459 1.0316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599681993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:09 Heat of formation + Delta-G solvation = -82.044353 kcal Electronic energy + Delta-G solvation = -25818.786310 eV Core-core repulsion = 22119.234986 eV Total energy + Delta-G solvation = -3699.551324 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.15045 -40.63754 -38.65091 -37.62084 -35.33382 -34.59485 -33.76353 -32.17176 -30.39281 -28.80193 -27.93727 -27.28403 -25.95052 -24.06872 -23.53362 -22.49811 -21.79161 -20.49902 -19.54869 -18.91049 -18.03847 -17.79895 -17.14161 -16.94611 -16.89085 -16.58180 -16.03410 -15.97947 -15.83028 -15.13196 -14.82147 -14.67655 -14.65826 -14.48424 -14.05252 -13.88810 -13.62808 -13.38028 -13.36672 -13.14945 -13.05264 -12.99897 -12.90639 -12.55790 -12.47178 -12.32564 -11.95554 -11.74855 -11.72620 -11.68469 -11.55083 -11.31382 -11.14439 -10.29847 -9.80379 -9.63403 -9.34958 -8.64850 -8.36737 -6.12327 0.33090 0.44540 1.04042 1.31955 1.38502 1.49409 1.57599 1.77066 2.28871 2.74267 2.87111 2.97439 3.33631 3.36725 3.53189 3.75425 3.86889 4.00353 4.05686 4.15061 4.24920 4.27384 4.30633 4.32960 4.34054 4.38449 4.49019 4.51543 4.61870 4.64250 4.71339 4.72760 4.74126 4.82450 4.85505 5.04786 5.14078 5.17082 5.26566 5.32231 5.41020 5.52287 5.57099 5.62811 5.89028 5.96227 6.09980 6.19245 6.59051 7.05754 8.72803 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.020041 B = 0.002147 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.804590 B =13040.730753 C =14174.598134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.352 6.352 3 C 0.479 3.521 4 O -0.531 6.531 5 C -0.030 4.030 6 H 0.139 0.861 7 C 0.070 3.930 8 N -0.533 5.533 9 C 0.070 3.930 10 C -0.081 4.081 11 C -0.088 4.088 12 S -0.196 6.196 13 C -0.536 4.536 14 H 0.072 0.928 15 C 0.014 3.986 16 N -0.907 5.907 17 Si 0.994 3.006 18 H -0.263 1.263 19 H -0.272 1.272 20 H -0.272 1.272 21 C 0.086 3.914 22 C -0.079 4.079 23 C -0.129 4.129 24 C -0.115 4.115 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.092 4.092 28 H 0.063 0.937 29 H 0.135 0.865 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.040 0.960 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.271 0.729 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.135 0.865 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.225 -17.839 5.795 30.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.268 6.268 3 C 0.323 3.677 4 O -0.420 6.420 5 C -0.049 4.049 6 H 0.156 0.844 7 C -0.058 4.058 8 N -0.257 5.257 9 C -0.059 4.059 10 C -0.119 4.119 11 C -0.237 4.237 12 S 0.032 5.968 13 C -0.684 4.684 14 H 0.090 0.910 15 C -0.191 4.191 16 N -0.544 5.544 17 Si 0.816 3.184 18 H -0.187 1.187 19 H -0.197 1.197 20 H -0.197 1.197 21 C -0.042 4.042 22 C -0.079 4.079 23 C -0.147 4.147 24 C -0.133 4.133 25 C -0.143 4.143 26 C -0.140 4.140 27 C -0.093 4.093 28 H 0.082 0.918 29 H 0.153 0.847 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.153 0.847 43 H 0.164 0.836 44 H 0.166 0.834 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -23.327 -18.775 5.702 30.482 hybrid contribution -0.774 2.767 -0.020 2.874 sum -24.102 -16.007 5.683 29.486 Atomic orbital electron populations 1.23602 0.74769 1.05951 1.02506 1.86504 1.24942 1.31960 1.83372 1.23564 0.91539 0.81529 0.71092 1.90672 1.67588 1.37278 1.46486 1.19921 0.86403 0.98277 1.00309 0.84354 1.21914 0.87567 0.93450 1.02835 1.62126 1.12234 1.28823 1.22505 1.22073 0.93994 0.88041 1.01769 1.21139 0.94266 0.94249 1.02294 1.23153 0.97000 1.00702 1.02882 1.84638 1.02616 1.17661 1.91856 1.23071 0.95354 0.95483 1.54520 0.90972 1.26069 0.94955 1.03584 0.94498 1.70163 0.99896 1.36891 1.47407 0.84967 0.78521 0.76706 0.78178 1.18717 1.19700 1.19681 1.21105 1.01242 0.93535 0.88305 1.19658 0.96171 0.96328 0.95751 1.21280 1.00855 0.96114 0.96449 1.21455 0.96225 0.95262 1.00380 1.21440 0.97030 1.00790 0.94995 1.21736 1.00505 0.93946 0.97811 1.19133 0.97755 0.96459 0.95909 0.91841 0.84663 0.92208 0.88715 0.94132 0.89430 0.94016 0.91682 0.91298 0.91774 0.92031 0.91992 0.93132 0.88777 0.84730 0.83580 0.83407 0.83228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.55 113.37 1.20 1.45 16 2 O -0.35 -5.52 7.67 -51.44 -0.39 -5.91 16 3 C 0.48 9.74 7.06 71.23 0.50 10.24 16 4 O -0.53 -13.65 15.56 21.95 0.34 -13.31 16 5 C -0.03 -0.59 2.93 -12.32 -0.04 -0.63 16 6 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 7 C 0.07 1.55 4.28 86.22 0.37 1.92 16 8 N -0.53 -12.70 4.68 -901.19 -4.22 -16.91 16 9 C 0.07 1.79 4.95 86.30 0.43 2.21 16 10 C -0.08 -2.55 5.16 30.59 0.16 -2.40 16 11 C -0.09 -3.50 5.67 71.98 0.41 -3.09 16 12 S -0.20 -10.48 21.44 -56.49 -1.21 -11.69 16 13 C -0.54 -31.16 9.50 67.95 0.65 -30.51 16 14 H 0.07 4.05 7.80 -2.91 -0.02 4.02 16 15 C 0.01 0.79 5.49 84.86 0.47 1.25 16 16 N -0.91 -55.01 13.22 21.65 0.29 -54.73 16 17 Si 0.99 44.23 29.55 68.60 2.03 46.25 16 18 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 C 0.09 1.97 4.91 85.58 0.42 2.39 16 22 C -0.08 -1.71 5.79 -19.87 -0.12 -1.82 16 23 C -0.13 -2.41 9.65 22.33 0.22 -2.20 16 24 C -0.12 -1.78 10.05 22.22 0.22 -1.56 16 25 C -0.12 -1.84 10.05 22.23 0.22 -1.62 16 26 C -0.12 -2.12 9.00 22.32 0.20 -1.92 16 27 C -0.09 -1.89 5.44 -19.85 -0.11 -2.00 16 28 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 29 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 31 H 0.09 1.96 7.85 -2.39 -0.02 1.94 16 32 H 0.04 0.98 7.70 -2.39 -0.02 0.96 16 33 H 0.09 2.09 7.89 -2.39 -0.02 2.08 16 34 H 0.04 1.04 8.06 -2.39 -0.02 1.02 16 35 H 0.06 2.07 6.66 -2.39 -0.02 2.06 16 36 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.06 2.51 8.14 -2.40 -0.02 2.49 16 38 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 40 H 0.05 1.15 8.07 -2.39 -0.02 1.13 16 41 H 0.09 2.23 6.65 -2.39 -0.02 2.22 16 42 H 0.13 2.18 8.06 -2.91 -0.02 2.15 16 43 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 44 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 45 H 0.15 2.22 5.34 -2.91 -0.02 2.20 16 Total: -1.00 -71.61 379.40 3.01 -68.60 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.98 Total: 15.98 kcal Atomic # 6 Polarization: -33.48 SS G_CDS: 5.20 Total: -28.28 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -3.93 Total: -71.64 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.05 Total: -19.22 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -10.48 SS G_CDS: -1.21 Total: -11.69 kcal Total: -71.61 3.01 -68.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599681993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.442 kcal (2) G-P(sol) polarization free energy of solvation -71.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds