Wall clock time and date at job start Tue Mar 31 2020 18:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00191 * 2 1 4 4 C 1.53000 * 109.47115 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46969 * 64.99800 * 4 3 2 6 6 C 1.37108 * 119.99923 * 269.99574 * 5 4 3 7 7 H 1.08003 * 119.99478 * 140.73771 * 6 5 4 8 8 C 1.38945 * 119.99948 * 320.73584 * 6 5 4 9 9 N 1.31405 * 120.00245 * 340.43886 * 8 6 5 10 10 Si 1.86802 * 119.99831 * 160.43703 * 8 6 5 11 11 H 1.48504 * 109.47008 * 60.00051 * 10 8 6 12 12 H 1.48496 * 109.47388 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47135 * 300.00084 * 10 8 6 14 14 C 1.34770 * 120.00119 * 90.00267 * 5 4 3 15 15 O 1.21291 * 119.99942 * 5.08578 * 14 5 4 16 16 C 1.50704 * 120.00396 * 185.08362 * 14 5 4 17 17 H 1.09001 * 109.46691 * 35.22840 * 16 14 5 18 18 C 1.52993 * 109.47249 * 275.23310 * 16 14 5 19 19 N 1.46497 * 109.47304 * 155.22821 * 16 14 5 20 20 C 1.34952 * 126.03659 * 85.00025 * 19 16 14 21 21 C 1.35314 * 107.74465 * 179.97438 * 20 19 16 22 22 C 1.39872 * 107.92374 * 0.02562 * 21 20 19 23 23 C 1.50692 * 125.89985 * 179.97438 * 22 21 20 24 24 F 1.39905 * 109.46978 * 90.00300 * 23 22 21 25 25 F 1.39906 * 109.47392 * 209.99832 * 23 22 21 26 26 F 1.39898 * 109.47166 * 330.00150 * 23 22 21 27 27 N 1.30844 * 108.20060 * 359.73688 * 22 21 20 28 28 H 1.09005 * 109.46961 * 299.99898 * 1 2 3 29 29 H 1.08993 * 109.46844 * 60.00130 * 1 2 3 30 30 H 1.08994 * 109.47185 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47118 * 59.99782 * 3 2 1 32 32 H 1.09002 * 109.46520 * 299.99959 * 3 2 1 33 33 H 1.09007 * 109.47103 * 304.99700 * 4 3 2 34 34 H 1.09000 * 109.47185 * 185.00151 * 4 3 2 35 35 H 0.97005 * 119.99975 * 185.11253 * 9 8 6 36 36 H 1.09005 * 109.47293 * 54.16259 * 18 16 14 37 37 H 1.09003 * 109.47367 * 174.16426 * 18 16 14 38 38 H 1.08999 * 109.47127 * 294.16640 * 18 16 14 39 39 H 1.07997 * 126.12436 * 359.96037 * 20 19 16 40 40 H 1.08001 * 126.03919 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0969 -0.7988 -1.3369 7 1 3.7959 -1.3130 -2.2377 8 6 4.6070 -1.5185 -0.2634 9 7 5.3180 -0.9085 0.6581 10 14 4.2821 -3.3532 -0.1302 11 1 4.8397 -4.0424 -1.3216 12 1 4.9306 -3.8830 1.0961 13 1 2.8182 -3.5928 -0.0596 14 6 4.2615 1.3336 -2.3218 15 8 4.2439 2.5422 -2.2214 16 6 4.6032 0.6921 -3.6420 17 1 4.0164 -0.2180 -3.7663 18 6 6.0932 0.3460 -3.6705 19 7 4.2971 1.6230 -4.7310 20 6 5.1081 2.5972 -5.1942 21 6 4.4597 3.2305 -6.1990 22 6 3.2095 2.6229 -6.3549 23 6 2.1577 3.0114 -7.3616 24 9 2.3515 2.2858 -8.5420 25 9 0.8892 2.7288 -6.8436 26 9 2.2559 4.3801 -7.6341 27 7 3.1130 1.6558 -5.4789 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8515 0.5682 0.8410 34 1 3.9786 2.1764 0.0889 35 1 5.7362 -1.4220 1.3670 36 1 6.3415 -0.2629 -2.8011 37 1 6.3198 -0.2100 -4.5802 38 1 6.6799 1.2644 -3.6503 39 1 6.0972 2.8298 -4.8283 40 1 4.8400 4.0592 -6.7778 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601624956.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:28 Heat of formation + Delta-G solvation = -137.054385 kcal Electronic energy + Delta-G solvation = -30137.068445 eV Core-core repulsion = 25346.981752 eV Total energy + Delta-G solvation = -4790.086693 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.05140 -47.59542 -47.53385 -41.26038 -38.92402 -37.08802 -34.94930 -34.17218 -31.77049 -30.60569 -29.94129 -29.02930 -26.25830 -25.90700 -25.02423 -24.04574 -22.18934 -20.92361 -20.61999 -19.29005 -18.44246 -18.16581 -17.89157 -17.20709 -16.69375 -15.91724 -15.53214 -15.41518 -14.81367 -14.49657 -14.43872 -14.41717 -14.30867 -14.16183 -13.98680 -13.74338 -13.70336 -13.69703 -13.40243 -13.20603 -12.98432 -12.37717 -12.08173 -11.95154 -11.85825 -11.67896 -11.26504 -11.24107 -11.16303 -11.04114 -10.80659 -10.69508 -10.47948 -10.17506 -9.69553 -9.27155 -9.04900 -8.88010 -8.31949 -7.65606 -6.49168 -4.20467 1.82635 2.17141 2.57052 2.94983 3.07635 3.17674 3.23547 3.56227 3.82487 4.03481 4.11252 4.40909 4.49247 4.53055 4.82945 4.97207 5.10572 5.40968 5.56791 5.58262 5.64513 5.68057 5.71486 5.90416 5.92380 5.95376 6.01471 6.03411 6.15067 6.19909 6.42322 6.46449 6.55639 7.09907 7.12558 7.33614 7.60589 7.67905 7.87584 8.17941 8.92690 9.24400 9.67659 10.53565 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.014184 B = 0.003728 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.626507 B = 7507.984237 C = 8132.226681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.053 3.947 4 C 0.114 3.886 5 N -0.414 5.414 6 C -0.339 4.339 7 H 0.087 0.913 8 C 0.059 3.941 9 N -0.860 5.860 10 Si 0.916 3.084 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.269 1.269 14 C 0.459 3.541 15 O -0.597 6.597 16 C 0.150 3.850 17 H 0.124 0.876 18 C -0.148 4.148 19 N -0.317 5.317 20 C 0.089 3.911 21 C -0.247 4.247 22 C -0.032 4.032 23 C 0.559 3.441 24 F -0.173 7.173 25 F -0.170 7.170 26 F -0.169 7.169 27 N -0.239 5.239 28 H 0.030 0.970 29 H 0.032 0.968 30 H 0.078 0.922 31 H 0.041 0.959 32 H 0.038 0.962 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.273 0.727 36 H 0.107 0.893 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.181 0.819 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.352 3.249 -8.170 8.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.025 4.025 4 C -0.010 4.010 5 N -0.131 5.131 6 C -0.467 4.467 7 H 0.105 0.895 8 C -0.148 4.148 9 N -0.496 5.496 10 Si 0.743 3.257 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.194 1.194 14 C 0.245 3.755 15 O -0.483 6.483 16 C 0.046 3.954 17 H 0.142 0.858 18 C -0.206 4.206 19 N -0.099 5.099 20 C -0.058 4.058 21 C -0.276 4.276 22 C -0.198 4.198 23 C 0.502 3.498 24 F -0.154 7.154 25 F -0.151 7.151 26 F -0.150 7.150 27 N -0.064 5.064 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.134 0.866 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.198 0.802 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.934 2.598 -7.293 7.980 hybrid contribution -0.154 -0.014 -0.166 0.227 sum -2.088 2.584 -7.459 8.166 Atomic orbital electron populations 1.22653 0.83301 1.01827 0.98888 1.88144 1.17466 1.27402 1.95032 1.23002 0.96250 0.84563 0.98635 1.21523 0.89449 0.99265 0.90740 1.43219 1.54739 1.06285 1.08851 1.19241 1.43656 0.80394 1.03381 0.89549 1.25262 0.93787 1.00105 0.95643 1.69796 1.28032 1.37023 1.14720 0.86173 0.79383 0.82357 0.77809 1.19841 1.20990 1.19382 1.20222 0.81797 0.87061 0.86402 1.90580 1.58263 1.14240 1.85181 1.21324 0.99730 0.91212 0.83119 0.85798 1.21999 0.91095 1.02851 1.04684 1.48715 1.10220 1.25643 1.25345 1.22485 0.98287 0.90160 0.94858 1.21035 0.94247 1.06991 1.05376 1.21844 0.96750 1.00922 1.00271 1.16894 0.79420 0.74481 0.78956 1.93218 1.95046 1.77762 1.49413 1.93228 1.41978 1.93300 1.86620 1.93197 1.96109 1.31592 1.94136 1.77301 1.04076 1.19353 1.05642 0.95142 0.94909 0.90349 0.94071 0.94416 0.86645 0.90803 0.91692 0.87436 0.91626 0.91844 0.80184 0.82692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.61 10.18 -35.23 -0.36 -7.97 16 3 C 0.05 1.09 6.28 37.16 0.23 1.32 16 4 C 0.11 2.58 5.47 -4.04 -0.02 2.56 16 5 N -0.41 -9.69 2.49 -114.81 -0.29 -9.97 16 6 C -0.34 -7.91 7.46 -14.93 -0.11 -8.03 16 7 H 0.09 1.96 6.50 -52.48 -0.34 1.62 16 8 C 0.06 1.39 4.99 -17.47 -0.09 1.30 16 9 N -0.86 -21.02 11.47 55.50 0.64 -20.39 16 10 Si 0.92 18.75 29.60 -169.99 -5.03 13.72 16 11 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 12 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 13 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 14 C 0.46 10.42 6.84 -10.99 -0.08 10.35 16 15 O -0.60 -14.91 15.92 5.55 0.09 -14.82 16 16 C 0.15 2.85 3.03 -69.09 -0.21 2.64 16 17 H 0.12 2.38 6.54 -51.93 -0.34 2.04 16 18 C -0.15 -2.31 8.89 37.15 0.33 -1.98 16 19 N -0.32 -5.87 3.23 -56.00 -0.18 -6.05 16 20 C 0.09 1.41 10.27 -17.22 -0.18 1.23 16 21 C -0.25 -3.70 10.42 -40.01 -0.42 -4.11 16 22 C -0.03 -0.55 6.56 -82.41 -0.54 -1.09 16 23 C 0.56 8.36 3.55 36.00 0.13 8.49 16 24 F -0.17 -2.46 17.30 2.25 0.04 -2.42 16 25 F -0.17 -2.72 17.25 2.25 0.04 -2.68 16 26 F -0.17 -2.32 17.04 2.25 0.04 -2.28 16 27 N -0.24 -4.63 12.51 33.67 0.42 -4.21 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.12 2.80 5.58 -51.92 -0.29 2.51 16 34 H 0.07 1.69 7.36 -51.93 -0.38 1.31 16 35 H 0.27 6.37 8.32 -40.82 -0.34 6.03 16 36 H 0.11 1.85 7.49 -51.93 -0.39 1.46 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.92 6.86 -51.93 -0.36 0.56 16 39 H 0.18 2.30 7.12 -52.49 -0.37 1.92 16 40 H 0.16 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -28.72 355.75 -3.64 -32.35 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -4.57 Total: 5.08 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: 0.16 Total: 14.29 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.59 Total: -40.62 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.27 Total: -22.79 kcal Atomic # 9 Polarization: -7.50 SS G_CDS: 0.12 Total: -7.38 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.72 -3.64 -32.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601624956.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.701 kcal (2) G-P(sol) polarization free energy of solvation -28.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds