Wall clock time and date at job start Tue Mar 31 2020 18:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00191 * 2 1 4 4 C 1.53000 * 109.47115 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46969 * 64.99800 * 4 3 2 6 6 C 1.37108 * 119.99923 * 269.99574 * 5 4 3 7 7 H 1.08003 * 119.99478 * 140.73771 * 6 5 4 8 8 C 1.38945 * 119.99948 * 320.73584 * 6 5 4 9 9 N 1.31405 * 120.00245 * 340.43886 * 8 6 5 10 10 Si 1.86802 * 119.99831 * 160.43703 * 8 6 5 11 11 H 1.48504 * 109.47008 * 60.00051 * 10 8 6 12 12 H 1.48496 * 109.47388 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47135 * 300.00084 * 10 8 6 14 14 C 1.34770 * 120.00119 * 90.00267 * 5 4 3 15 15 O 1.21291 * 119.99942 * 5.08578 * 14 5 4 16 16 C 1.50704 * 120.00396 * 185.08362 * 14 5 4 17 17 H 1.09001 * 109.46691 * 35.22840 * 16 14 5 18 18 C 1.52993 * 109.47249 * 275.23310 * 16 14 5 19 19 N 1.46497 * 109.47304 * 155.22821 * 16 14 5 20 20 C 1.34952 * 126.03659 * 85.00025 * 19 16 14 21 21 C 1.35314 * 107.74465 * 179.97438 * 20 19 16 22 22 C 1.39872 * 107.92374 * 0.02562 * 21 20 19 23 23 C 1.50692 * 125.89985 * 179.97438 * 22 21 20 24 24 F 1.39905 * 109.46978 * 90.00300 * 23 22 21 25 25 F 1.39906 * 109.47392 * 209.99832 * 23 22 21 26 26 F 1.39898 * 109.47166 * 330.00150 * 23 22 21 27 27 N 1.30844 * 108.20060 * 359.73688 * 22 21 20 28 28 H 1.09005 * 109.46961 * 299.99898 * 1 2 3 29 29 H 1.08993 * 109.46844 * 60.00130 * 1 2 3 30 30 H 1.08994 * 109.47185 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47118 * 59.99782 * 3 2 1 32 32 H 1.09002 * 109.46520 * 299.99959 * 3 2 1 33 33 H 1.09007 * 109.47103 * 304.99700 * 4 3 2 34 34 H 1.09000 * 109.47185 * 185.00151 * 4 3 2 35 35 H 0.97005 * 119.99975 * 185.11253 * 9 8 6 36 36 H 1.09005 * 109.47293 * 54.16259 * 18 16 14 37 37 H 1.09003 * 109.47367 * 174.16426 * 18 16 14 38 38 H 1.08999 * 109.47127 * 294.16640 * 18 16 14 39 39 H 1.07997 * 126.12436 * 359.96037 * 20 19 16 40 40 H 1.08001 * 126.03919 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0969 -0.7988 -1.3369 7 1 3.7959 -1.3130 -2.2377 8 6 4.6070 -1.5185 -0.2634 9 7 5.3180 -0.9085 0.6581 10 14 4.2821 -3.3532 -0.1302 11 1 4.8397 -4.0424 -1.3216 12 1 4.9306 -3.8830 1.0961 13 1 2.8182 -3.5928 -0.0596 14 6 4.2615 1.3336 -2.3218 15 8 4.2439 2.5422 -2.2214 16 6 4.6032 0.6921 -3.6420 17 1 4.0164 -0.2180 -3.7663 18 6 6.0932 0.3460 -3.6705 19 7 4.2971 1.6230 -4.7310 20 6 5.1081 2.5972 -5.1942 21 6 4.4597 3.2305 -6.1990 22 6 3.2095 2.6229 -6.3549 23 6 2.1577 3.0114 -7.3616 24 9 2.3515 2.2858 -8.5420 25 9 0.8892 2.7288 -6.8436 26 9 2.2559 4.3801 -7.6341 27 7 3.1130 1.6558 -5.4789 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8515 0.5682 0.8410 34 1 3.9786 2.1764 0.0889 35 1 5.7362 -1.4220 1.3670 36 1 6.3415 -0.2629 -2.8011 37 1 6.3198 -0.2100 -4.5802 38 1 6.6799 1.2644 -3.6503 39 1 6.0972 2.8298 -4.8283 40 1 4.8400 4.0592 -6.7778 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601624956.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:27 Heat of formation + Delta-G solvation = -154.209525 kcal Electronic energy + Delta-G solvation = -30137.812347 eV Core-core repulsion = 25346.981752 eV Total energy + Delta-G solvation = -4790.830596 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -51.23304 -48.75311 -48.73361 -42.57697 -40.63658 -38.66271 -36.70580 -35.64182 -33.57794 -31.98401 -31.24627 -30.57293 -27.51368 -27.34796 -26.75798 -25.50295 -23.72472 -22.19832 -22.05090 -20.97081 -19.62741 -19.50546 -19.18641 -18.63294 -18.31228 -17.39993 -17.20807 -16.96116 -16.39779 -16.05778 -15.92737 -15.77878 -15.59349 -15.51776 -15.16175 -15.14502 -14.90016 -14.88193 -14.77528 -14.69677 -14.27856 -13.72735 -13.65789 -13.41870 -13.26588 -13.12613 -12.91568 -12.84995 -12.70183 -12.57100 -12.36830 -12.10539 -12.04471 -11.85093 -11.22412 -10.93294 -10.59683 -10.42177 -9.75475 -9.47136 -8.28617 -6.04374 0.50153 0.87922 1.37088 1.43365 1.53804 1.59369 1.69109 1.88772 2.33306 2.59339 2.81661 2.90583 2.96572 3.12303 3.30997 3.65970 3.84016 3.98473 4.03587 4.18925 4.33251 4.35595 4.45967 4.49857 4.52723 4.54711 4.66654 4.71256 4.74718 4.78031 4.83827 5.18681 5.22429 5.29266 5.49840 5.84142 5.93675 6.31021 6.34469 6.36971 7.11900 7.46038 7.89133 8.74731 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.014184 B = 0.003728 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.626507 B = 7507.984237 C = 8132.226681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.392 6.392 3 C 0.064 3.936 4 C 0.112 3.888 5 N -0.424 5.424 6 C -0.344 4.344 7 H 0.090 0.910 8 C 0.027 3.973 9 N -0.886 5.886 10 Si 0.971 3.029 11 H -0.260 1.260 12 H -0.284 1.284 13 H -0.277 1.277 14 C 0.449 3.551 15 O -0.626 6.626 16 C 0.158 3.842 17 H 0.115 0.885 18 C -0.137 4.137 19 N -0.332 5.332 20 C 0.085 3.915 21 C -0.240 4.240 22 C -0.039 4.039 23 C 0.566 3.434 24 F -0.167 7.167 25 F -0.178 7.178 26 F -0.159 7.159 27 N -0.283 5.283 28 H 0.053 0.947 29 H 0.035 0.965 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.022 0.978 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.273 0.727 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.209 0.791 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.138 3.101 -9.205 9.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C -0.013 4.013 4 C -0.012 4.012 5 N -0.140 5.140 6 C -0.471 4.471 7 H 0.107 0.893 8 C -0.177 4.177 9 N -0.523 5.523 10 Si 0.795 3.205 11 H -0.184 1.184 12 H -0.210 1.210 13 H -0.203 1.203 14 C 0.237 3.763 15 O -0.514 6.514 16 C 0.054 3.946 17 H 0.133 0.867 18 C -0.196 4.196 19 N -0.114 5.114 20 C -0.061 4.061 21 C -0.269 4.269 22 C -0.204 4.204 23 C 0.510 3.490 24 F -0.148 7.148 25 F -0.160 7.160 26 F -0.140 7.140 27 N -0.108 5.108 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.226 0.774 40 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -1.726 2.446 -8.348 8.869 hybrid contribution -0.266 0.115 0.135 0.320 sum -1.992 2.561 -8.213 8.831 Atomic orbital electron populations 1.22875 0.80792 1.03322 1.00124 1.88078 1.20274 1.27520 1.95262 1.22812 0.94668 0.84740 0.99107 1.21457 0.91188 0.98190 0.90360 1.43414 1.54804 1.06571 1.09231 1.19400 1.43537 0.80490 1.03672 0.89270 1.25873 0.93376 1.03257 0.95220 1.69881 1.28885 1.38256 1.15261 0.85332 0.78480 0.78537 0.78115 1.18423 1.20993 1.20266 1.20880 0.80989 0.86833 0.87577 1.90539 1.59462 1.15458 1.85957 1.21167 1.01495 0.90542 0.81434 0.86689 1.21950 0.88819 1.03507 1.05281 1.48689 1.10639 1.26576 1.25499 1.23113 0.99177 0.89204 0.94649 1.21484 0.93155 1.07209 1.05039 1.22256 0.97841 1.00433 0.99905 1.16703 0.78695 0.74872 0.78760 1.93229 1.94963 1.77728 1.48922 1.93212 1.42494 1.93426 1.86823 1.93217 1.96012 1.30761 1.94020 1.77243 1.05192 1.21220 1.07151 0.92822 0.94665 0.88799 0.91371 0.95949 0.88218 0.91876 0.91674 0.89209 0.88694 0.90584 0.77419 0.79319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.39 -16.37 10.18 -148.98 -1.52 -17.89 16 3 C 0.06 2.64 6.28 71.98 0.45 3.10 16 4 C 0.11 5.20 5.47 86.38 0.47 5.67 16 5 N -0.42 -20.17 2.49 -635.53 -1.58 -21.76 16 6 C -0.34 -16.15 7.46 84.04 0.63 -15.52 16 7 H 0.09 4.07 6.50 -2.91 -0.02 4.05 16 8 C 0.03 1.28 4.99 84.93 0.42 1.70 16 9 N -0.89 -43.75 11.47 21.66 0.25 -43.50 16 10 Si 0.97 38.07 29.60 68.60 2.03 40.10 16 11 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 12 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 13 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 14 C 0.45 20.68 6.84 87.66 0.60 21.28 16 15 O -0.63 -31.73 15.92 -3.06 -0.05 -31.78 16 16 C 0.16 5.96 3.03 44.24 0.13 6.09 16 17 H 0.12 4.47 6.54 -2.39 -0.02 4.46 16 18 C -0.14 -4.11 8.89 71.98 0.64 -3.47 16 19 N -0.33 -12.00 3.23 -331.07 -1.07 -13.07 16 20 C 0.08 2.50 10.27 83.54 0.86 3.36 16 21 C -0.24 -6.60 10.42 21.99 0.23 -6.37 16 22 C -0.04 -1.26 6.56 43.10 0.28 -0.98 16 23 C 0.57 16.16 3.55 71.23 0.25 16.41 16 24 F -0.17 -4.48 17.30 44.97 0.78 -3.71 16 25 F -0.18 -5.60 17.25 44.97 0.78 -4.82 16 26 F -0.16 -4.04 17.04 44.97 0.77 -3.27 16 27 N -0.28 -10.88 12.51 -47.39 -0.59 -11.47 16 28 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.10 4.96 5.58 -2.38 -0.01 4.95 16 34 H 0.06 2.99 7.36 -2.39 -0.02 2.97 16 35 H 0.27 12.87 8.32 -92.70 -0.77 12.10 16 36 H 0.09 3.05 7.49 -2.38 -0.02 3.03 16 37 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.08 2.06 6.86 -2.39 -0.02 2.04 16 39 H 0.21 4.71 7.12 -2.91 -0.02 4.69 16 40 H 0.19 3.75 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -62.14 355.75 7.10 -55.04 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 1.09 Total: 22.83 kcal Atomic # 6 Polarization: 27.07 SS G_CDS: 6.22 Total: 33.28 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -2.99 Total: -89.79 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: -1.57 Total: -49.66 kcal Atomic # 9 Polarization: -14.12 SS G_CDS: 2.32 Total: -11.80 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Total: -62.14 7.10 -55.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601624956.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.170 kcal (2) G-P(sol) polarization free energy of solvation -62.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds