Wall clock time and date at job start Tue Mar 31 2020 19:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00194 * 2 1 4 4 C 1.53000 * 109.46999 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46992 * 64.99670 * 4 3 2 6 6 C 1.46499 * 119.99936 * 90.00137 * 5 4 3 7 7 C 1.50703 * 109.47126 * 89.99796 * 6 5 4 8 8 H 1.08002 * 119.99820 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99889 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00192 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00045 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46767 * 89.99886 * 11 9 7 13 13 H 1.48493 * 109.47240 * 210.00027 * 11 9 7 14 14 H 1.48500 * 109.46974 * 329.99973 * 11 9 7 15 15 C 1.34773 * 119.99969 * 269.72101 * 5 4 3 16 16 O 1.21281 * 120.00220 * 0.02562 * 15 5 4 17 17 C 1.50706 * 120.00080 * 180.02562 * 15 5 4 18 18 N 1.46500 * 109.47299 * 180.02562 * 17 15 5 19 19 C 1.34945 * 126.03225 * 124.71492 * 18 17 15 20 20 C 1.35324 * 107.74293 * 179.84021 * 19 18 17 21 21 C 1.39870 * 107.91633 * 0.42574 * 20 19 18 22 22 C 1.50703 * 125.89522 * 179.71917 * 21 20 19 23 23 F 1.39902 * 109.46794 * 185.00119 * 22 21 20 24 24 F 1.39906 * 109.46951 * 304.99563 * 22 21 20 25 25 F 1.39901 * 109.47429 * 64.99734 * 22 21 20 26 26 N 1.30834 * 108.20598 * 359.73651 * 21 20 19 27 27 H 1.09005 * 109.47031 * 300.00496 * 1 2 3 28 28 H 1.08996 * 109.47115 * 59.99818 * 1 2 3 29 29 H 1.08998 * 109.47832 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47320 * 59.99819 * 3 2 1 31 31 H 1.08998 * 109.46759 * 299.99542 * 3 2 1 32 32 H 1.09000 * 109.46884 * 305.00285 * 4 3 2 33 33 H 1.09000 * 109.46955 * 184.99601 * 4 3 2 34 34 H 1.08994 * 109.47173 * 210.00167 * 6 5 4 35 35 H 1.09005 * 109.47077 * 330.00338 * 6 5 4 36 36 H 0.96995 * 119.99689 * 179.97438 * 10 9 7 37 37 H 1.09004 * 109.46762 * 300.00389 * 17 15 5 38 38 H 1.08998 * 109.46924 * 59.99727 * 17 15 5 39 39 H 1.07998 * 126.13053 * 0.02562 * 19 18 17 40 40 H 1.07998 * 126.04057 * 180.15819 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5642 -1.2528 6 6 4.2864 1.4004 -2.4149 7 6 5.7443 1.7807 -2.3846 8 1 6.3761 1.4346 -1.5800 9 6 6.2713 2.5715 -3.3836 10 7 5.5018 2.9934 -4.3632 11 14 8.0783 3.0435 -3.3458 12 1 8.8719 2.0230 -4.0765 13 1 8.2577 4.3674 -3.9940 14 1 8.5418 3.1154 -1.9368 15 6 4.1001 -0.7753 -1.3338 16 8 3.8473 -1.4673 -0.3704 17 6 4.5534 -1.4134 -2.6216 18 7 4.6072 -2.8678 -2.4536 19 6 3.9732 -3.7794 -3.2204 20 6 4.2812 -5.0070 -2.7414 21 6 5.1247 -4.8392 -1.6383 22 6 5.7069 -5.9443 -0.7950 23 9 6.4062 -5.3896 0.2822 24 9 4.6745 -6.7558 -0.3125 25 9 6.5802 -6.7131 -1.5718 26 7 5.3208 -3.5573 -1.4649 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3635 -1.0276 0.0005 30 1 1.6887 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 3.8514 0.5680 0.8409 33 1 3.9786 2.1764 0.0889 34 1 4.0745 0.8455 -3.3288 35 1 3.6750 2.3024 -2.3873 36 1 5.8725 3.5500 -5.0657 37 1 3.8505 -1.1656 -3.4170 38 1 5.5438 -1.0406 -2.8829 39 1 3.3367 -3.5675 -4.0667 40 1 3.9334 -5.9494 -3.1378 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609136502.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:53 Heat of formation + Delta-G solvation = -160.089098 kcal Electronic energy + Delta-G solvation = -29608.974714 eV Core-core repulsion = 24817.889161 eV Total energy + Delta-G solvation = -4791.085553 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.21305 -48.73013 -48.72117 -42.47520 -40.66359 -38.65303 -36.71322 -34.82662 -34.53506 -31.80503 -31.23554 -29.63081 -28.79758 -27.29960 -26.50374 -24.93932 -23.79151 -22.42586 -22.09861 -20.14778 -19.60381 -19.33181 -18.99525 -18.69009 -18.06998 -17.85880 -17.20894 -16.94036 -16.64995 -16.40057 -15.88985 -15.85707 -15.59275 -15.58021 -15.14852 -15.14496 -14.87516 -14.86492 -14.75195 -14.44856 -14.36302 -14.18569 -13.58406 -13.52055 -13.36264 -13.22710 -13.04695 -12.89449 -12.67083 -12.54984 -12.11408 -11.98021 -11.93171 -11.69825 -11.16650 -10.65964 -10.59176 -10.44279 -9.79088 -9.46484 -8.21629 -6.35358 0.58035 0.93131 1.39155 1.40654 1.45518 1.52351 1.71121 1.75084 2.24912 2.41851 2.66687 2.92295 2.95727 3.09526 3.33668 3.54916 3.73515 3.89775 4.15204 4.22656 4.28559 4.40166 4.41855 4.51990 4.53397 4.57243 4.61756 4.72701 4.80658 4.88194 4.96629 5.15802 5.23315 5.63935 5.78800 5.87970 6.04328 6.32307 6.33953 6.54697 6.79783 7.29461 7.41602 8.82882 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.009443 B = 0.004015 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.380439 B = 6972.989653 C = 8914.652580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.052 3.948 4 C 0.119 3.881 5 N -0.592 5.592 6 C 0.250 3.750 7 C -0.550 4.550 8 H 0.048 0.952 9 C 0.033 3.967 10 N -0.912 5.912 11 Si 0.946 3.054 12 H -0.277 1.277 13 H -0.281 1.281 14 H -0.277 1.277 15 C 0.503 3.497 16 O -0.559 6.559 17 C 0.118 3.882 18 N -0.342 5.342 19 C 0.073 3.927 20 C -0.237 4.237 21 C -0.048 4.048 22 C 0.563 3.437 23 F -0.180 7.180 24 F -0.164 7.164 25 F -0.164 7.164 26 N -0.262 5.262 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.040 0.960 35 H 0.030 0.970 36 H 0.269 0.731 37 H 0.159 0.841 38 H 0.119 0.881 39 H 0.232 0.768 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.674 -10.287 0.415 12.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C -0.025 4.025 4 C -0.004 4.004 5 N -0.324 5.324 6 C 0.130 3.870 7 C -0.589 4.589 8 H 0.067 0.933 9 C -0.168 4.168 10 N -0.551 5.551 11 Si 0.772 3.228 12 H -0.202 1.202 13 H -0.206 1.206 14 H -0.202 1.202 15 C 0.290 3.710 16 O -0.438 6.438 17 C -0.005 4.005 18 N -0.125 5.125 19 C -0.072 4.072 20 C -0.266 4.266 21 C -0.215 4.215 22 C 0.506 3.494 23 F -0.162 7.162 24 F -0.146 7.146 25 F -0.145 7.145 26 N -0.086 5.086 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.176 0.824 38 H 0.137 0.863 39 H 0.248 0.752 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -7.121 -9.662 1.451 12.090 hybrid contribution 0.634 0.213 -0.277 0.724 sum -6.487 -9.449 1.174 11.522 Atomic orbital electron populations 1.22840 0.80294 1.02987 1.00675 1.88067 1.20764 1.28228 1.95480 1.22971 0.93431 0.84877 1.01247 1.21457 0.93069 0.99186 0.86722 1.48038 1.64695 1.05345 1.14332 1.19189 0.94743 0.90336 0.82769 1.21672 0.95757 1.32355 1.09093 0.93347 1.25456 1.01118 0.95370 0.94888 1.69961 1.36985 1.35649 1.12494 0.85742 0.81178 0.77795 0.78075 1.20233 1.20601 1.20178 1.20498 0.77768 0.82902 0.89863 1.90698 1.51258 1.62602 1.39264 1.21832 1.06764 0.74020 0.97934 1.48406 1.35798 1.06541 1.21742 1.23482 0.97808 0.87434 0.98430 1.21532 1.05861 1.00458 0.98744 1.22293 1.05439 0.92692 1.01033 1.16804 0.75491 0.79986 0.77096 1.93208 1.79912 1.85491 1.57545 1.93220 1.58644 1.74176 1.88541 1.93224 1.70022 1.76550 1.74742 1.77437 1.16851 1.04341 1.10021 0.92877 0.93498 0.89735 0.90470 0.92856 0.91729 0.87999 0.94259 0.95210 0.92208 0.82355 0.86308 0.75165 0.79247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.41 -13.62 9.52 -142.28 -1.35 -14.97 16 3 C 0.05 1.55 6.28 71.98 0.45 2.00 16 4 C 0.12 4.17 5.86 86.38 0.51 4.68 16 5 N -0.59 -23.20 2.44 -826.14 -2.01 -25.22 16 6 C 0.25 10.55 4.96 85.63 0.42 10.98 16 7 C -0.55 -26.36 9.26 25.60 0.24 -26.12 16 8 H 0.05 2.44 7.81 -2.91 -0.02 2.42 16 9 C 0.03 1.62 5.46 84.65 0.46 2.08 16 10 N -0.91 -46.06 13.29 21.45 0.28 -45.77 16 11 Si 0.95 39.90 29.54 68.60 2.03 41.93 16 12 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 13 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 14 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 15 C 0.50 20.28 7.33 87.66 0.64 20.92 16 16 O -0.56 -26.07 14.52 3.67 0.05 -26.02 16 17 C 0.12 3.94 5.54 85.64 0.47 4.42 16 18 N -0.34 -11.24 3.40 -351.78 -1.20 -12.44 16 19 C 0.07 1.73 11.45 83.54 0.96 2.68 16 20 C -0.24 -5.78 10.73 21.99 0.24 -5.55 16 21 C -0.05 -1.55 6.51 43.10 0.28 -1.27 16 22 C 0.56 16.53 3.51 71.24 0.25 16.78 16 23 F -0.18 -6.03 17.14 44.97 0.77 -5.25 16 24 F -0.16 -4.47 17.30 44.97 0.78 -3.69 16 25 F -0.16 -4.35 17.30 44.97 0.78 -3.57 16 26 N -0.26 -10.10 11.41 -47.38 -0.54 -10.64 16 27 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 2.47 7.41 -2.39 -0.02 2.46 16 33 H 0.10 3.35 8.07 -2.39 -0.02 3.33 16 34 H 0.04 1.63 6.45 -2.39 -0.02 1.61 16 35 H 0.03 1.32 8.07 -2.38 -0.02 1.30 16 36 H 0.27 12.98 8.31 -92.71 -0.77 12.21 16 37 H 0.16 4.12 7.34 -2.39 -0.02 4.10 16 38 H 0.12 4.24 7.98 -2.39 -0.02 4.23 16 39 H 0.23 2.95 8.06 -2.91 -0.02 2.92 16 40 H 0.19 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -66.88 363.35 6.83 -60.05 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 1.08 Total: 12.09 kcal Atomic # 6 Polarization: 27.35 SS G_CDS: 6.17 Total: 33.52 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -3.47 Total: -94.07 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -1.30 Total: -40.99 kcal Atomic # 9 Polarization: -14.85 SS G_CDS: 2.33 Total: -12.52 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Total: -66.88 6.83 -60.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136502.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.044 kcal (2) G-P(sol) polarization free energy of solvation -66.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds