Wall clock time and date at job start Tue Mar 31 2020 19:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00125 * 2 1 4 4 C 1.53002 * 109.47117 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46891 * 65.00106 * 4 3 2 6 6 C 1.46495 * 120.00185 * 270.00169 * 5 4 3 7 7 C 1.50708 * 109.46944 * 270.00024 * 6 5 4 8 8 H 1.07997 * 119.99293 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00094 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99898 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00161 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47068 * 59.99604 * 11 9 7 13 13 H 1.48500 * 109.46936 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.46800 * 299.99736 * 11 9 7 15 15 C 1.34782 * 119.99645 * 89.99620 * 5 4 3 16 16 O 1.21275 * 120.00171 * 0.02562 * 15 5 4 17 17 C 1.50701 * 119.99559 * 179.97438 * 15 5 4 18 18 H 1.08997 * 109.31218 * 335.39228 * 17 15 5 19 19 S 1.81329 * 109.30929 * 95.00534 * 17 15 5 20 20 C 1.82064 * 100.84909 * 166.28345 * 19 17 15 21 21 C 1.52140 * 107.74660 * 296.00503 * 20 19 17 22 22 C 1.50229 * 113.58521 * 52.95683 * 21 20 19 23 23 C 1.39936 * 114.47599 * 159.88362 * 22 21 20 24 24 C 1.37453 * 121.52114 * 178.15014 * 23 22 21 25 25 C 1.38293 * 119.50856 * 0.06786 * 24 23 22 26 26 C 1.37572 * 119.26610 * 0.41924 * 25 24 23 27 27 C 1.36936 * 126.71302 * 338.79214 * 22 21 20 28 28 H 1.08996 * 109.47365 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47183 * 300.00285 * 1 2 3 30 30 H 1.09000 * 109.46571 * 60.00084 * 1 2 3 31 31 H 1.09003 * 109.47307 * 60.00108 * 3 2 1 32 32 H 1.08999 * 109.47301 * 299.99908 * 3 2 1 33 33 H 1.08995 * 109.47248 * 305.00115 * 4 3 2 34 34 H 1.08997 * 109.47367 * 184.99821 * 4 3 2 35 35 H 1.09001 * 109.47312 * 29.99477 * 6 5 4 36 36 H 1.08996 * 109.47439 * 149.99889 * 6 5 4 37 37 H 0.96997 * 119.99618 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.80581 * 55.56414 * 20 19 17 39 39 H 1.08999 * 109.80806 * 176.44351 * 20 19 17 40 40 H 1.09005 * 108.66112 * 291.89760 * 21 20 19 41 41 H 1.09000 * 108.66462 * 174.01807 * 21 20 19 42 42 H 1.07998 * 119.24334 * 358.12214 * 23 22 21 43 43 H 1.08007 * 120.25021 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.37034 * 180.44229 * 25 24 23 45 45 H 1.07999 * 119.33440 * 179.89397 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1062 -0.8926 -1.3404 7 6 5.5017 -1.2983 -0.9413 8 1 6.2202 -0.5462 -0.6506 9 6 5.8613 -2.6292 -0.9484 10 7 4.9863 -3.5449 -1.3030 11 14 7.5912 -3.1320 -0.4545 12 1 7.8538 -2.6968 0.9408 13 1 7.7228 -4.6083 -0.5463 14 1 8.5724 -2.4904 -1.3660 15 6 4.2633 1.3329 -2.3201 16 8 4.1564 2.5387 -2.2459 17 6 4.7176 0.6944 -3.6073 18 1 5.1667 -0.2747 -3.3901 19 16 3.2882 0.4621 -4.6986 20 6 4.1182 0.1003 -6.2781 21 6 4.9061 1.3376 -6.6819 22 6 5.8329 1.8364 -5.6099 23 6 6.8637 2.6619 -6.0727 24 6 7.7721 3.2289 -5.2109 25 6 7.6708 2.9804 -3.8542 26 6 6.6657 2.1617 -3.3937 27 6 5.7455 1.5796 -4.2677 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8508 0.5684 0.8426 34 1 3.9785 2.1764 0.0902 35 1 3.3858 -1.3633 -0.6714 36 1 3.9138 -1.2123 -2.3645 37 1 5.2393 -4.4813 -1.3076 38 1 4.7955 -0.7447 -6.1545 39 1 3.3751 -0.1297 -7.0417 40 1 4.2034 2.1321 -6.9329 41 1 5.4938 1.1026 -7.5694 42 1 6.9479 2.8576 -7.1315 43 1 8.5596 3.8632 -5.5904 44 1 8.3727 3.4245 -3.1639 45 1 6.5866 1.9656 -2.3346 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610387323.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:47 Heat of formation + Delta-G solvation = -51.163372 kcal Electronic energy + Delta-G solvation = -27729.871354 eV Core-core repulsion = 24031.659130 eV Total energy + Delta-G solvation = -3698.212224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.97040 -38.74170 -37.33443 -34.95006 -34.31428 -32.76308 -32.35934 -29.99804 -29.48217 -27.41736 -26.98594 -25.79246 -23.92940 -22.92198 -22.68786 -21.86315 -20.37762 -18.52443 -16.86540 -16.62527 -16.40126 -16.18695 -15.85213 -15.71750 -15.16927 -15.03726 -14.91041 -14.60484 -14.40672 -14.10114 -13.75222 -13.21061 -13.05410 -12.80520 -12.68995 -12.38943 -12.34327 -12.02717 -11.96080 -11.66936 -11.48571 -11.43286 -11.27087 -10.98885 -10.96363 -10.84979 -10.67803 -10.50054 -10.14395 -9.74283 -9.71885 -9.37228 -9.14057 -8.52862 -8.47378 -8.35189 -7.73208 -7.35191 -6.13520 -4.21809 1.48266 1.60575 1.79776 2.62963 3.25280 3.30430 3.32105 3.51075 3.78096 4.02709 4.18902 4.35666 4.68567 4.78210 4.95093 5.11146 5.18540 5.20518 5.25884 5.35380 5.42281 5.48072 5.53838 5.61762 5.67935 5.69635 5.71003 5.75128 5.83752 5.86930 5.90340 5.97355 6.05874 6.18097 6.28511 6.35395 6.64031 6.70512 6.80048 6.82506 7.19989 7.35746 7.51471 7.57553 7.81792 8.09960 8.29345 8.77888 8.93761 9.45123 10.92662 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.008471 B = 0.005631 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3304.769803 B = 4971.170287 C = 6376.927266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.048 3.952 4 C 0.122 3.878 5 N -0.578 5.578 6 C 0.234 3.766 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.068 3.932 10 N -0.885 5.885 11 Si 0.892 3.108 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.540 3.460 16 O -0.556 6.556 17 C -0.042 4.042 18 H 0.143 0.857 19 S -0.213 6.213 20 C -0.089 4.089 21 C -0.076 4.076 22 C -0.074 4.074 23 C -0.128 4.128 24 C -0.120 4.120 25 C -0.124 4.124 26 C -0.083 4.083 27 C -0.050 4.050 28 H 0.083 0.917 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.265 0.735 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.619 8.846 -6.820 11.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.030 4.030 4 C -0.002 4.002 5 N -0.308 5.308 6 C 0.114 3.886 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.135 4.135 10 N -0.522 5.522 11 Si 0.719 3.281 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.201 1.201 15 C 0.325 3.675 16 O -0.437 6.437 17 C -0.172 4.172 18 H 0.160 0.840 19 S 0.015 5.985 20 C -0.237 4.237 21 C -0.115 4.115 22 C -0.074 4.074 23 C -0.146 4.146 24 C -0.138 4.138 25 C -0.142 4.142 26 C -0.102 4.102 27 C -0.051 4.051 28 H 0.102 0.898 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.129 0.871 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.752 9.092 -6.555 11.542 hybrid contribution 2.028 -0.388 0.136 2.069 sum -0.724 8.704 -6.420 10.840 Atomic orbital electron populations 1.22675 0.82124 1.02410 0.99143 1.88054 1.18706 1.27284 1.95197 1.23000 0.95111 0.85063 0.99809 1.21375 0.91283 0.99570 0.87938 1.48123 1.62733 1.10158 1.09744 1.19603 0.97327 0.72387 0.99236 1.21483 0.97253 0.92471 1.47102 0.92322 1.24906 0.97365 0.96342 0.94923 1.69936 1.34271 1.01206 1.46836 0.86650 0.84610 0.77483 0.79307 1.20107 1.21107 1.20139 1.19288 0.77637 0.86468 0.84140 1.90621 1.54888 1.14152 1.84013 1.22316 0.95736 1.03906 0.95284 0.83966 1.86994 1.12475 1.92917 1.06080 1.23321 1.02490 1.00649 0.97241 1.20391 0.97402 0.97168 0.96491 1.19301 0.96827 0.98716 0.92597 1.21181 0.95481 0.98556 0.99423 1.20916 0.99092 1.00108 0.93676 1.20967 0.98522 0.99086 0.95655 1.21308 0.93539 0.95628 0.99766 1.18991 0.95799 0.97959 0.92395 0.89845 0.94787 0.94593 0.93193 0.93323 0.89207 0.89431 0.92878 0.94040 0.92496 0.89092 0.87089 0.89670 0.90076 0.86457 0.86272 0.86068 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.37 -6.89 9.53 -35.23 -0.34 -7.22 16 3 C 0.05 0.81 6.28 37.16 0.23 1.05 16 4 C 0.12 2.28 5.81 -4.04 -0.02 2.26 16 5 N -0.58 -12.45 2.42 -175.06 -0.42 -12.87 16 6 C 0.23 5.70 4.58 -5.19 -0.02 5.68 16 7 C -0.54 -14.16 8.92 -34.44 -0.31 -14.46 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.88 -24.56 13.29 55.43 0.74 -23.82 16 11 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 C 0.54 11.57 5.32 -10.98 -0.06 11.51 16 16 O -0.56 -12.60 15.19 5.56 0.08 -12.51 16 17 C -0.04 -0.84 2.19 -28.95 -0.06 -0.90 16 18 H 0.14 3.16 5.94 -51.92 -0.31 2.85 16 19 S -0.21 -3.85 21.55 -107.50 -2.32 -6.17 16 20 C -0.09 -1.20 6.57 36.72 0.24 -0.95 16 21 C -0.08 -0.95 5.29 -28.55 -0.15 -1.11 16 22 C -0.07 -1.15 5.74 -104.69 -0.60 -1.75 16 23 C -0.13 -1.74 9.39 -39.23 -0.37 -2.10 16 24 C -0.12 -1.61 10.05 -39.85 -0.40 -2.01 16 25 C -0.12 -1.89 10.07 -39.80 -0.40 -2.29 16 26 C -0.08 -1.52 8.29 -39.31 -0.33 -1.84 16 27 C -0.05 -0.91 5.22 -104.49 -0.55 -1.46 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 1.68 8.07 -51.93 -0.42 1.26 16 34 H 0.09 1.55 7.42 -51.93 -0.39 1.16 16 35 H 0.05 1.41 7.12 -51.93 -0.37 1.04 16 36 H 0.04 1.07 6.32 -51.93 -0.33 0.74 16 37 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.08 0.80 7.97 -51.93 -0.41 0.39 16 42 H 0.12 1.23 7.94 -52.49 -0.42 0.82 16 43 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 44 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 45 H 0.12 2.38 6.84 -52.49 -0.36 2.02 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -30.65 378.00 -10.13 -40.78 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.77 Total: 5.64 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -1.78 Total: -5.09 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.31 Total: -36.69 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.25 Total: -19.74 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: -3.85 SS G_CDS: -2.32 Total: -6.17 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.65 -10.13 -40.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610387323.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.385 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds