Wall clock time and date at job start Tue Mar 31 2020 19:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00125 * 2 1 4 4 C 1.53002 * 109.47117 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46891 * 65.00106 * 4 3 2 6 6 C 1.46495 * 120.00185 * 270.00169 * 5 4 3 7 7 C 1.50708 * 109.46944 * 270.00024 * 6 5 4 8 8 H 1.07997 * 119.99293 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00094 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99898 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00161 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47068 * 59.99604 * 11 9 7 13 13 H 1.48500 * 109.46936 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.46800 * 299.99736 * 11 9 7 15 15 C 1.34782 * 119.99645 * 89.99620 * 5 4 3 16 16 O 1.21275 * 120.00171 * 0.02562 * 15 5 4 17 17 C 1.50701 * 119.99559 * 179.97438 * 15 5 4 18 18 H 1.08997 * 109.31218 * 335.39228 * 17 15 5 19 19 S 1.81329 * 109.30929 * 95.00534 * 17 15 5 20 20 C 1.82064 * 100.84909 * 166.28345 * 19 17 15 21 21 C 1.52140 * 107.74660 * 296.00503 * 20 19 17 22 22 C 1.50229 * 113.58521 * 52.95683 * 21 20 19 23 23 C 1.39936 * 114.47599 * 159.88362 * 22 21 20 24 24 C 1.37453 * 121.52114 * 178.15014 * 23 22 21 25 25 C 1.38293 * 119.50856 * 0.06786 * 24 23 22 26 26 C 1.37572 * 119.26610 * 0.41924 * 25 24 23 27 27 C 1.36936 * 126.71302 * 338.79214 * 22 21 20 28 28 H 1.08996 * 109.47365 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47183 * 300.00285 * 1 2 3 30 30 H 1.09000 * 109.46571 * 60.00084 * 1 2 3 31 31 H 1.09003 * 109.47307 * 60.00108 * 3 2 1 32 32 H 1.08999 * 109.47301 * 299.99908 * 3 2 1 33 33 H 1.08995 * 109.47248 * 305.00115 * 4 3 2 34 34 H 1.08997 * 109.47367 * 184.99821 * 4 3 2 35 35 H 1.09001 * 109.47312 * 29.99477 * 6 5 4 36 36 H 1.08996 * 109.47439 * 149.99889 * 6 5 4 37 37 H 0.96997 * 119.99618 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.80581 * 55.56414 * 20 19 17 39 39 H 1.08999 * 109.80806 * 176.44351 * 20 19 17 40 40 H 1.09005 * 108.66112 * 291.89760 * 21 20 19 41 41 H 1.09000 * 108.66462 * 174.01807 * 21 20 19 42 42 H 1.07998 * 119.24334 * 358.12214 * 23 22 21 43 43 H 1.08007 * 120.25021 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.37034 * 180.44229 * 25 24 23 45 45 H 1.07999 * 119.33440 * 179.89397 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1062 -0.8926 -1.3404 7 6 5.5017 -1.2983 -0.9413 8 1 6.2202 -0.5462 -0.6506 9 6 5.8613 -2.6292 -0.9484 10 7 4.9863 -3.5449 -1.3030 11 14 7.5912 -3.1320 -0.4545 12 1 7.8538 -2.6968 0.9408 13 1 7.7228 -4.6083 -0.5463 14 1 8.5724 -2.4904 -1.3660 15 6 4.2633 1.3329 -2.3201 16 8 4.1564 2.5387 -2.2459 17 6 4.7176 0.6944 -3.6073 18 1 5.1667 -0.2747 -3.3901 19 16 3.2882 0.4621 -4.6986 20 6 4.1182 0.1003 -6.2781 21 6 4.9061 1.3376 -6.6819 22 6 5.8329 1.8364 -5.6099 23 6 6.8637 2.6619 -6.0727 24 6 7.7721 3.2289 -5.2109 25 6 7.6708 2.9804 -3.8542 26 6 6.6657 2.1617 -3.3937 27 6 5.7455 1.5796 -4.2677 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8508 0.5684 0.8426 34 1 3.9785 2.1764 0.0902 35 1 3.3858 -1.3633 -0.6714 36 1 3.9138 -1.2123 -2.3645 37 1 5.2393 -4.4813 -1.3076 38 1 4.7955 -0.7447 -6.1545 39 1 3.3751 -0.1297 -7.0417 40 1 4.2034 2.1321 -6.9329 41 1 5.4938 1.1026 -7.5694 42 1 6.9479 2.8576 -7.1315 43 1 8.5596 3.8632 -5.5904 44 1 8.3727 3.4245 -3.1639 45 1 6.5866 1.9656 -2.3346 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610387323.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:46 Heat of formation + Delta-G solvation = -67.972881 kcal Electronic energy + Delta-G solvation = -27730.600269 eV Core-core repulsion = 24031.659130 eV Total energy + Delta-G solvation = -3698.941139 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.44293 -40.11193 -38.72842 -36.72604 -35.39738 -34.65037 -33.82388 -31.47490 -30.65267 -29.09820 -28.52866 -27.08740 -25.16907 -24.84076 -24.01274 -23.17372 -21.52902 -20.16634 -18.71866 -18.28696 -17.89749 -17.56627 -17.23171 -17.15896 -16.58967 -16.31610 -16.22085 -16.18263 -15.89298 -15.41628 -15.06105 -14.66545 -14.45510 -14.20742 -14.00330 -13.94833 -13.65358 -13.53831 -13.43064 -13.14699 -12.95583 -12.81723 -12.79376 -12.62738 -12.44669 -12.19887 -12.12806 -11.94696 -11.85094 -11.72181 -11.07467 -10.86450 -10.65498 -10.52955 -9.67114 -9.58165 -9.50893 -8.78693 -8.20047 -6.35947 0.19762 0.43034 0.47911 1.36327 1.39203 1.39707 1.47796 1.86797 2.17974 2.39488 2.80711 2.89901 3.09417 3.41839 3.57979 3.74759 3.82647 4.07839 4.08688 4.17395 4.20258 4.22790 4.28093 4.32927 4.48830 4.51112 4.52530 4.55910 4.57414 4.73007 4.79075 4.81636 4.82897 4.91785 4.96610 5.02539 5.15526 5.29431 5.51814 5.55193 5.59408 5.62517 5.79776 6.04332 6.07160 6.24428 6.48104 6.76604 7.16467 7.35792 8.85544 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.008471 B = 0.005631 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3304.769803 B = 4971.170287 C = 6376.927266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.057 3.943 4 C 0.115 3.885 5 N -0.584 5.584 6 C 0.259 3.741 7 C -0.552 4.552 8 H 0.051 0.949 9 C 0.024 3.976 10 N -0.915 5.915 11 Si 0.953 3.047 12 H -0.270 1.270 13 H -0.278 1.278 14 H -0.273 1.273 15 C 0.540 3.460 16 O -0.573 6.573 17 C -0.031 4.031 18 H 0.106 0.894 19 S -0.261 6.261 20 C -0.073 4.073 21 C -0.075 4.075 22 C -0.083 4.083 23 C -0.122 4.122 24 C -0.113 4.113 25 C -0.130 4.130 26 C -0.115 4.115 27 C -0.082 4.082 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.035 0.965 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.028 0.972 36 H 0.023 0.977 37 H 0.268 0.732 38 H 0.086 0.914 39 H 0.145 0.855 40 H 0.097 0.903 41 H 0.123 0.877 42 H 0.160 0.840 43 H 0.159 0.841 44 H 0.139 0.861 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.414 10.057 -9.060 13.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C -0.020 4.020 4 C -0.008 4.008 5 N -0.313 5.313 6 C 0.139 3.861 7 C -0.591 4.591 8 H 0.070 0.930 9 C -0.177 4.177 10 N -0.553 5.553 11 Si 0.778 3.222 12 H -0.195 1.195 13 H -0.203 1.203 14 H -0.198 1.198 15 C 0.326 3.674 16 O -0.455 6.455 17 C -0.162 4.162 18 H 0.124 0.876 19 S -0.033 6.033 20 C -0.221 4.221 21 C -0.113 4.113 22 C -0.084 4.084 23 C -0.140 4.140 24 C -0.130 4.130 25 C -0.148 4.148 26 C -0.135 4.135 27 C -0.084 4.084 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.046 0.954 36 H 0.041 0.959 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.162 0.838 40 H 0.115 0.885 41 H 0.141 0.859 42 H 0.178 0.822 43 H 0.177 0.823 44 H 0.156 0.844 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.557 10.315 -8.783 13.637 hybrid contribution 1.635 -0.723 0.775 1.949 sum 0.078 9.593 -8.008 12.496 Atomic orbital electron populations 1.22870 0.79919 1.03398 1.00575 1.88004 1.21260 1.28123 1.95465 1.22902 0.93463 0.84873 1.00805 1.21571 0.93100 0.99509 0.86643 1.48106 1.63138 1.09128 1.10969 1.19075 0.95890 0.73926 0.97236 1.21646 0.97793 0.92640 1.46977 0.93048 1.25640 1.01015 0.96236 0.94764 1.70041 1.36091 1.01521 1.47695 0.85680 0.80069 0.77335 0.79080 1.19504 1.20321 1.19789 1.19567 0.76918 0.86283 0.84607 1.90577 1.55816 1.14661 1.84399 1.22025 0.96577 1.02372 0.95237 0.87617 1.87003 1.13554 1.93141 1.09616 1.23527 1.02923 1.01330 0.94317 1.20491 0.97491 0.96643 0.96637 1.19744 0.98017 0.98770 0.91854 1.21668 0.93944 0.96773 1.01571 1.21394 0.99620 0.99494 0.92522 1.21245 0.97822 0.98293 0.97455 1.21235 0.95741 0.98121 0.98400 1.19073 0.95942 0.99345 0.94067 0.89191 0.92136 0.94255 0.89595 0.94622 0.89661 0.88679 0.95373 0.95887 0.92285 0.89509 0.83756 0.88512 0.85931 0.82244 0.82336 0.84358 0.89391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.41 -15.54 9.53 -148.98 -1.42 -16.96 16 3 C 0.06 1.98 6.28 71.98 0.45 2.43 16 4 C 0.11 4.51 5.81 86.38 0.50 5.01 16 5 N -0.58 -26.91 2.42 -826.15 -2.00 -28.91 16 6 C 0.26 13.53 4.58 85.64 0.39 13.92 16 7 C -0.55 -30.21 8.92 25.60 0.23 -29.99 16 8 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 9 C 0.02 1.33 5.46 84.65 0.46 1.79 16 10 N -0.91 -52.40 13.29 21.45 0.28 -52.12 16 11 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 13 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 15 C 0.54 24.69 5.32 87.66 0.47 25.16 16 16 O -0.57 -27.35 15.19 -3.02 -0.05 -27.39 16 17 C -0.03 -1.33 2.19 29.15 0.06 -1.27 16 18 H 0.11 5.13 5.94 -2.40 -0.01 5.11 16 19 S -0.26 -9.73 21.55 -56.49 -1.22 -10.95 16 20 C -0.07 -1.85 6.57 71.70 0.47 -1.38 16 21 C -0.07 -1.62 5.29 29.42 0.16 -1.46 16 22 C -0.08 -2.43 5.74 -19.91 -0.11 -2.55 16 23 C -0.12 -2.81 9.39 22.50 0.21 -2.60 16 24 C -0.11 -2.63 10.05 22.10 0.22 -2.41 16 25 C -0.13 -3.85 10.07 22.13 0.22 -3.63 16 26 C -0.12 -4.39 8.29 22.45 0.19 -4.20 16 27 C -0.08 -3.11 5.22 -19.78 -0.10 -3.22 16 28 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 3.37 8.07 -2.39 -0.02 3.35 16 34 H 0.10 3.54 7.42 -2.39 -0.02 3.52 16 35 H 0.03 1.60 7.12 -2.39 -0.02 1.58 16 36 H 0.02 1.28 6.32 -2.39 -0.02 1.27 16 37 H 0.27 14.50 8.31 -92.71 -0.77 13.72 16 38 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.14 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.12 1.73 7.97 -2.39 -0.02 1.71 16 42 H 0.16 2.33 7.94 -2.91 -0.02 2.31 16 43 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 44 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 45 H 0.09 3.79 6.84 -2.91 -0.02 3.77 16 Total: -1.00 -71.16 378.00 3.68 -67.48 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.98 Total: 26.11 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 5.07 Total: -2.34 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -1.71 Total: -81.03 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -1.46 Total: -44.35 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -9.73 SS G_CDS: -1.22 Total: -10.95 kcal Total: -71.16 3.68 -67.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610387323.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.493 kcal (2) G-P(sol) polarization free energy of solvation -71.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds