Wall clock time and date at job start Tue Mar 31 2020 19:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00104 * 2 1 4 4 C 1.52998 * 109.47369 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47008 * 64.99873 * 4 3 2 6 6 C 1.46505 * 120.00154 * 264.78268 * 5 4 3 7 7 C 1.50693 * 109.46857 * 273.91733 * 6 5 4 8 8 H 1.08001 * 120.00597 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99992 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99806 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00193 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47395 * 59.99705 * 11 9 7 13 13 H 1.48498 * 109.47204 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47143 * 299.99681 * 11 9 7 15 15 C 1.34776 * 120.00127 * 84.77813 * 5 4 3 16 16 O 1.21584 * 119.99776 * 3.21496 * 15 5 4 17 17 C 1.47628 * 120.00503 * 183.21310 * 15 5 4 18 18 C 1.39533 * 120.51525 * 130.19583 * 17 15 5 19 19 N 1.31698 * 120.95424 * 179.97438 * 18 17 15 20 20 C 1.32318 * 121.83477 * 0.02562 * 19 18 17 21 21 C 1.39848 * 120.54858 * 0.02768 * 20 19 18 22 22 C 1.38194 * 119.60121 * 359.95885 * 21 20 19 23 23 N 1.40140 * 119.51997 * 179.97438 * 21 20 19 24 24 C 1.35141 * 118.86710 * 15.56659 * 23 21 20 25 25 O 1.21292 * 120.19460 * 181.64797 * 24 23 21 26 26 C 1.50762 * 119.60873 * 1.66543 * 24 23 21 27 27 O 1.35759 * 120.37558 * 180.02562 * 20 19 18 28 28 H 1.09003 * 109.47588 * 299.99955 * 1 2 3 29 29 H 1.08999 * 109.47046 * 60.00292 * 1 2 3 30 30 H 1.08997 * 109.47386 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46878 * 59.99700 * 3 2 1 32 32 H 1.08992 * 109.46905 * 299.99961 * 3 2 1 33 33 H 1.09000 * 109.47108 * 305.00466 * 4 3 2 34 34 H 1.08997 * 109.47278 * 184.99997 * 4 3 2 35 35 H 1.08997 * 109.46907 * 33.92111 * 6 5 4 36 36 H 1.09003 * 109.46895 * 153.92055 * 6 5 4 37 37 H 0.97000 * 119.99905 * 180.02562 * 10 9 7 38 38 H 1.07998 * 119.51778 * 0.25582 * 18 17 15 39 39 H 1.08001 * 120.95468 * 180.02562 * 22 21 20 40 40 H 0.97002 * 120.55904 * 195.56062 * 23 21 20 41 41 H 1.09000 * 109.43209 * 208.43254 * 26 24 23 42 42 H 1.08999 * 109.38707 * 88.55269 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2508 6 6 4.2163 -0.8802 -1.3076 7 6 5.6254 -1.1733 -0.8610 8 1 6.2774 -0.3648 -0.5649 9 6 6.0827 -2.4737 -0.8313 10 7 5.2890 -3.4583 -1.1923 11 14 7.8292 -2.8372 -0.2771 12 1 8.0159 -2.3594 1.1165 13 1 8.0722 -4.3011 -0.3347 14 1 8.7876 -2.1403 -1.1719 15 6 4.1619 1.3215 -2.3501 16 8 4.0197 2.5274 -2.2884 17 6 4.5377 0.6871 -3.6291 18 6 3.8393 0.9849 -4.7997 19 7 4.1674 0.4244 -5.9454 20 6 5.1651 -0.4396 -6.0393 21 6 5.9113 -0.7893 -4.9094 22 6 5.6024 -0.2254 -3.6861 23 7 6.9630 -1.7071 -5.0333 24 6 7.4393 -1.9911 -6.2657 25 8 8.3288 -2.8040 -6.4035 26 6 6.8587 -1.2911 -7.4681 27 8 5.4782 -0.9994 -7.2358 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 3.8507 0.5685 0.8426 34 1 3.9784 2.1766 0.0902 35 1 3.5130 -1.3913 -0.6502 36 1 4.0788 -1.2314 -2.3303 37 1 5.6106 -4.3732 -1.1711 38 1 3.0207 1.6886 -4.7666 39 1 6.1645 -0.4794 -2.7995 40 1 7.3426 -2.1311 -4.2478 41 1 6.9506 -1.9357 -8.3423 42 1 7.4019 -0.3625 -7.6435 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611292822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:36 Heat of formation + Delta-G solvation = -96.399462 kcal Electronic energy + Delta-G solvation = -29893.787791 eV Core-core repulsion = 25647.320768 eV Total energy + Delta-G solvation = -4246.467023 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.54039 -39.81853 -38.78190 -37.76413 -37.28224 -35.51092 -35.07751 -32.90713 -32.04823 -30.12462 -29.68295 -28.02009 -27.26561 -26.08131 -24.57760 -23.50736 -23.07983 -22.64473 -20.69654 -19.12476 -18.79867 -17.61536 -17.29859 -16.76159 -16.69077 -16.33839 -16.05367 -15.70919 -15.49221 -15.26645 -15.00763 -14.81497 -14.52994 -14.50215 -14.04382 -13.79957 -13.41669 -13.09617 -12.82134 -12.69622 -12.46806 -12.08001 -11.84812 -11.61570 -11.55207 -11.41936 -11.20279 -11.13883 -10.98054 -10.68697 -10.37698 -10.22192 -9.96830 -9.83352 -9.46125 -9.21697 -9.00540 -8.69676 -8.01502 -7.87190 -6.35950 -4.45739 0.82834 1.31107 2.20270 2.68285 2.97517 3.08063 3.16630 3.18559 3.20747 3.63569 3.86537 3.94654 4.07126 4.16897 4.59049 4.77238 4.82085 4.91898 4.99077 5.10922 5.26124 5.31857 5.39253 5.48859 5.58006 5.60260 5.62832 5.78058 5.81549 5.98833 6.25487 6.34953 6.41937 6.50476 6.64684 6.81388 7.14359 7.15639 7.37534 7.41300 7.59645 7.76289 7.87831 7.96701 8.15285 8.57785 8.76096 9.20495 10.68622 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009778 B = 0.005219 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.955637 B = 5363.670827 C = 7310.525127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.377 6.377 3 C 0.046 3.954 4 C 0.123 3.877 5 N -0.576 5.576 6 C 0.233 3.767 7 C -0.552 4.552 8 H 0.064 0.936 9 C 0.070 3.930 10 N -0.874 5.874 11 Si 0.886 3.114 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.564 3.436 16 O -0.565 6.565 17 C -0.160 4.160 18 C 0.154 3.846 19 N -0.475 5.475 20 C 0.297 3.703 21 C 0.041 3.959 22 C -0.027 4.027 23 N -0.646 5.646 24 C 0.489 3.511 25 O -0.515 6.515 26 C 0.057 3.943 27 O -0.291 6.291 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.039 0.961 37 H 0.269 0.731 38 H 0.171 0.829 39 H 0.189 0.811 40 H 0.423 0.577 41 H 0.151 0.849 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.157 6.175 -4.174 8.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.295 6.295 3 C -0.031 4.031 4 C 0.000 4.000 5 N -0.305 5.305 6 C 0.114 3.886 7 C -0.590 4.590 8 H 0.082 0.918 9 C -0.135 4.135 10 N -0.510 5.510 11 Si 0.713 3.287 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.199 1.199 15 C 0.351 3.649 16 O -0.446 6.446 17 C -0.166 4.166 18 C -0.003 4.003 19 N -0.192 5.192 20 C 0.115 3.885 21 C -0.057 4.057 22 C -0.054 4.054 23 N -0.294 5.294 24 C 0.275 3.725 25 O -0.391 6.391 26 C -0.022 4.022 27 O -0.200 6.200 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.188 0.812 39 H 0.206 0.794 40 H 0.264 0.736 41 H 0.168 0.832 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.240 6.086 -5.322 8.710 hybrid contribution 1.437 -0.706 1.656 2.303 sum -1.803 5.379 -3.666 6.755 Atomic orbital electron populations 1.22683 0.82020 1.02429 0.99268 1.88039 1.18782 1.27471 1.95235 1.23023 0.95099 0.84973 1.00032 1.21378 0.91172 0.99694 0.87801 1.48097 1.62883 1.11165 1.08337 1.19630 0.96751 0.73216 0.99028 1.21474 0.97966 0.92789 1.46762 0.91768 1.24964 0.97786 0.96002 0.94795 1.69923 1.35787 0.99998 1.45312 0.86740 0.84240 0.77719 0.80041 1.19746 1.20852 1.19901 1.17891 0.77403 0.86066 0.83566 1.90717 1.54323 1.13921 1.85677 1.20750 0.99273 1.00702 0.95901 1.22488 0.97614 0.95442 0.84787 1.66844 1.15863 1.08110 1.28414 1.19260 0.92699 0.93040 0.83483 1.18713 0.93927 0.97666 0.95425 1.22447 0.95679 0.89699 0.97575 1.43710 1.33538 1.42099 1.10040 1.21475 0.82792 0.82951 0.85239 1.90804 1.29927 1.32891 1.85454 1.23274 0.80040 1.01963 0.96934 1.86102 1.25271 1.75732 1.32941 0.94651 0.94547 0.89885 0.93029 0.93158 0.88957 0.89360 0.93161 0.94333 0.92114 0.81242 0.79418 0.73600 0.83175 0.88057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.38 -6.26 10.03 -35.23 -0.35 -6.62 16 3 C 0.05 0.70 6.25 37.16 0.23 0.93 16 4 C 0.12 2.06 5.79 -4.04 -0.02 2.04 16 5 N -0.58 -11.15 2.41 -176.26 -0.43 -11.57 16 6 C 0.23 5.13 4.58 -5.19 -0.02 5.11 16 7 C -0.55 -12.71 6.63 -34.44 -0.23 -12.94 16 8 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.87 -22.23 13.29 55.43 0.74 -21.50 16 11 Si 0.89 18.80 29.54 -169.99 -5.02 13.78 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 13 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 15 C 0.56 10.87 7.21 -12.43 -0.09 10.78 16 16 O -0.56 -11.53 16.69 5.29 0.09 -11.44 16 17 C -0.16 -2.90 4.84 -104.79 -0.51 -3.41 16 18 C 0.15 2.54 10.88 -17.13 -0.19 2.35 16 19 N -0.47 -8.04 10.37 -12.74 -0.13 -8.17 16 20 C 0.30 4.96 7.54 -16.74 -0.13 4.83 16 21 C 0.04 0.70 6.54 -83.47 -0.55 0.15 16 22 C -0.03 -0.49 7.67 -38.81 -0.30 -0.79 16 23 N -0.65 -10.53 5.48 -9.63 -0.05 -10.58 16 24 C 0.49 7.39 7.95 -10.79 -0.09 7.30 16 25 O -0.52 -9.07 17.95 5.55 0.10 -8.97 16 26 C 0.06 0.65 7.16 36.04 0.26 0.91 16 27 O -0.29 -4.31 10.50 -18.99 -0.20 -4.51 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.56 8.03 -51.93 -0.42 1.15 16 34 H 0.09 1.40 7.54 -51.93 -0.39 1.00 16 35 H 0.05 1.23 7.55 -51.93 -0.39 0.83 16 36 H 0.04 0.90 5.72 -51.93 -0.30 0.60 16 37 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 38 H 0.17 2.41 8.06 -52.49 -0.42 1.98 16 39 H 0.19 3.73 4.85 -52.49 -0.25 3.48 16 40 H 0.42 7.09 8.89 -40.82 -0.36 6.72 16 41 H 0.15 1.29 8.14 -51.93 -0.42 0.86 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 360.82 15.07 5.44 5.44 Total: -1.00 -29.18 360.82 -5.47 -34.65 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -5.04 Total: 9.13 kcal Atomic # 6 Polarization: 20.97 SS G_CDS: -0.61 Total: 20.36 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: 0.13 Total: -51.82 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.36 Total: -31.53 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.18 -5.47 -34.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611292822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.745 kcal (2) G-P(sol) polarization free energy of solvation -29.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds