Wall clock time and date at job start Tue Mar 31 2020 19:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00104 * 2 1 4 4 C 1.52998 * 109.47369 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47008 * 64.99873 * 4 3 2 6 6 C 1.46505 * 120.00154 * 264.78268 * 5 4 3 7 7 C 1.50693 * 109.46857 * 273.91733 * 6 5 4 8 8 H 1.08001 * 120.00597 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99992 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99806 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00193 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47395 * 59.99705 * 11 9 7 13 13 H 1.48498 * 109.47204 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47143 * 299.99681 * 11 9 7 15 15 C 1.34776 * 120.00127 * 84.77813 * 5 4 3 16 16 O 1.21584 * 119.99776 * 3.21496 * 15 5 4 17 17 C 1.47628 * 120.00503 * 183.21310 * 15 5 4 18 18 C 1.39533 * 120.51525 * 130.19583 * 17 15 5 19 19 N 1.31698 * 120.95424 * 179.97438 * 18 17 15 20 20 C 1.32318 * 121.83477 * 0.02562 * 19 18 17 21 21 C 1.39848 * 120.54858 * 0.02768 * 20 19 18 22 22 C 1.38194 * 119.60121 * 359.95885 * 21 20 19 23 23 N 1.40140 * 119.51997 * 179.97438 * 21 20 19 24 24 C 1.35141 * 118.86710 * 15.56659 * 23 21 20 25 25 O 1.21292 * 120.19460 * 181.64797 * 24 23 21 26 26 C 1.50762 * 119.60873 * 1.66543 * 24 23 21 27 27 O 1.35759 * 120.37558 * 180.02562 * 20 19 18 28 28 H 1.09003 * 109.47588 * 299.99955 * 1 2 3 29 29 H 1.08999 * 109.47046 * 60.00292 * 1 2 3 30 30 H 1.08997 * 109.47386 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46878 * 59.99700 * 3 2 1 32 32 H 1.08992 * 109.46905 * 299.99961 * 3 2 1 33 33 H 1.09000 * 109.47108 * 305.00466 * 4 3 2 34 34 H 1.08997 * 109.47278 * 184.99997 * 4 3 2 35 35 H 1.08997 * 109.46907 * 33.92111 * 6 5 4 36 36 H 1.09003 * 109.46895 * 153.92055 * 6 5 4 37 37 H 0.97000 * 119.99905 * 180.02562 * 10 9 7 38 38 H 1.07998 * 119.51778 * 0.25582 * 18 17 15 39 39 H 1.08001 * 120.95468 * 180.02562 * 22 21 20 40 40 H 0.97002 * 120.55904 * 195.56062 * 23 21 20 41 41 H 1.09000 * 109.43209 * 208.43254 * 26 24 23 42 42 H 1.08999 * 109.38707 * 88.55269 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2508 6 6 4.2163 -0.8802 -1.3076 7 6 5.6254 -1.1733 -0.8610 8 1 6.2774 -0.3648 -0.5649 9 6 6.0827 -2.4737 -0.8313 10 7 5.2890 -3.4583 -1.1923 11 14 7.8292 -2.8372 -0.2771 12 1 8.0159 -2.3594 1.1165 13 1 8.0722 -4.3011 -0.3347 14 1 8.7876 -2.1403 -1.1719 15 6 4.1619 1.3215 -2.3501 16 8 4.0197 2.5274 -2.2884 17 6 4.5377 0.6871 -3.6291 18 6 3.8393 0.9849 -4.7997 19 7 4.1674 0.4244 -5.9454 20 6 5.1651 -0.4396 -6.0393 21 6 5.9113 -0.7893 -4.9094 22 6 5.6024 -0.2254 -3.6861 23 7 6.9630 -1.7071 -5.0333 24 6 7.4393 -1.9911 -6.2657 25 8 8.3288 -2.8040 -6.4035 26 6 6.8587 -1.2911 -7.4681 27 8 5.4782 -0.9994 -7.2358 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 3.8507 0.5685 0.8426 34 1 3.9784 2.1766 0.0902 35 1 3.5130 -1.3913 -0.6502 36 1 4.0788 -1.2314 -2.3303 37 1 5.6106 -4.3732 -1.1711 38 1 3.0207 1.6886 -4.7666 39 1 6.1645 -0.4794 -2.7995 40 1 7.3426 -2.1311 -4.2478 41 1 6.9506 -1.9357 -8.3423 42 1 7.4019 -0.3625 -7.6435 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611292822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:36 Heat of formation + Delta-G solvation = -119.057735 kcal Electronic energy + Delta-G solvation = -29894.770327 eV Core-core repulsion = 25647.320768 eV Total energy + Delta-G solvation = -4247.449559 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.80648 -41.23020 -40.12500 -38.97997 -38.54004 -36.91702 -36.56704 -34.65570 -33.44341 -31.39201 -31.03275 -29.26419 -28.84777 -27.18773 -25.91182 -24.89973 -24.78323 -23.93474 -21.98400 -20.47270 -20.06680 -18.94279 -18.74836 -18.37560 -18.04892 -17.65897 -17.39713 -16.97222 -16.82231 -16.56502 -16.42186 -16.13287 -15.95147 -15.72095 -15.37116 -15.12658 -14.71959 -14.54710 -14.29388 -14.04487 -13.95930 -13.49203 -13.23704 -13.06014 -12.80097 -12.76380 -12.67188 -12.59953 -12.43814 -12.17446 -11.92390 -11.72776 -11.48194 -11.32950 -10.69446 -10.64300 -10.52908 -10.33899 -9.51844 -9.26602 -8.22088 -6.36478 -0.49540 -0.05724 1.00018 1.37654 1.41754 1.46512 1.48594 1.69317 1.80681 2.17643 2.36691 2.55123 2.74692 2.96833 3.05838 3.29209 3.54709 3.68026 3.87893 3.93746 4.06581 4.19006 4.22095 4.28883 4.41902 4.48451 4.55878 4.58532 4.66831 4.86909 4.91498 4.98281 5.05030 5.07569 5.14094 5.31863 5.55535 5.63467 5.79453 5.89413 6.03851 6.30355 6.49170 6.52660 6.67016 6.78196 7.17584 7.34510 8.81648 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009778 B = 0.005219 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.955637 B = 5363.670827 C = 7310.525127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.053 3.947 4 C 0.116 3.884 5 N -0.579 5.579 6 C 0.256 3.744 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.036 3.964 10 N -0.906 5.906 11 Si 0.936 3.064 12 H -0.272 1.272 13 H -0.289 1.289 14 H -0.264 1.264 15 C 0.565 3.435 16 O -0.576 6.576 17 C -0.177 4.177 18 C 0.164 3.836 19 N -0.479 5.479 20 C 0.303 3.697 21 C 0.039 3.961 22 C -0.034 4.034 23 N -0.653 5.653 24 C 0.488 3.512 25 O -0.543 6.543 26 C 0.060 3.940 27 O -0.293 6.293 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.023 0.977 36 H 0.024 0.976 37 H 0.267 0.733 38 H 0.193 0.807 39 H 0.171 0.829 40 H 0.417 0.583 41 H 0.187 0.813 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.176 7.166 -5.134 9.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.331 6.331 3 C -0.024 4.024 4 C -0.006 4.006 5 N -0.308 5.308 6 C 0.135 3.865 7 C -0.584 4.584 8 H 0.080 0.920 9 C -0.167 4.167 10 N -0.543 5.543 11 Si 0.762 3.238 12 H -0.197 1.197 13 H -0.214 1.214 14 H -0.189 1.189 15 C 0.353 3.647 16 O -0.459 6.459 17 C -0.183 4.183 18 C 0.007 3.993 19 N -0.197 5.197 20 C 0.121 3.879 21 C -0.059 4.059 22 C -0.062 4.062 23 N -0.299 5.299 24 C 0.276 3.724 25 O -0.420 6.420 26 C -0.018 4.018 27 O -0.203 6.203 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.076 0.924 38 H 0.210 0.790 39 H 0.188 0.812 40 H 0.256 0.744 41 H 0.204 0.796 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.264 7.104 -6.285 10.031 hybrid contribution 1.429 -1.010 1.925 2.601 sum -1.835 6.094 -4.360 7.714 Atomic orbital electron populations 1.22862 0.80006 1.03246 1.00707 1.87991 1.21133 1.28463 1.95514 1.22966 0.93510 0.84722 1.01251 1.21572 0.92909 0.99710 0.86428 1.48067 1.63075 1.10145 1.09476 1.19157 0.95482 0.74590 0.97282 1.21589 0.98319 0.92656 1.45823 0.91950 1.25494 1.00437 0.95886 0.94857 1.70023 1.37253 1.00146 1.46897 0.85934 0.81117 0.77092 0.79662 1.19709 1.21443 1.18880 1.18008 0.76979 0.85885 0.83812 1.90699 1.55036 1.14231 1.85925 1.20744 1.00013 1.01500 0.96046 1.22797 0.97449 0.95077 0.84010 1.66956 1.15993 1.08425 1.28338 1.19396 0.92102 0.92442 0.83994 1.18674 0.94280 0.97736 0.95240 1.22206 0.95987 0.90447 0.97524 1.43842 1.33499 1.42021 1.10583 1.22158 0.82190 0.82419 0.85590 1.90793 1.31286 1.34160 1.85765 1.23694 0.78425 1.03758 0.95894 1.86118 1.27244 1.75205 1.31684 0.92412 0.93810 0.89501 0.89895 0.93633 0.89623 0.88366 0.95851 0.95777 0.92396 0.79036 0.81233 0.74388 0.79622 0.84746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.01 113.37 1.25 1.91 16 2 O -0.41 -13.53 10.03 -148.98 -1.49 -15.02 16 3 C 0.05 1.53 6.25 71.98 0.45 1.98 16 4 C 0.12 3.87 5.79 86.38 0.50 4.37 16 5 N -0.58 -22.61 2.41 -829.82 -2.00 -24.61 16 6 C 0.26 11.54 4.58 85.63 0.39 11.93 16 7 C -0.55 -25.57 6.63 25.60 0.17 -25.40 16 8 H 0.06 2.91 7.81 -2.91 -0.02 2.89 16 9 C 0.04 1.73 5.46 84.65 0.46 2.19 16 10 N -0.91 -47.06 13.29 21.45 0.28 -46.77 16 11 Si 0.94 38.80 29.54 68.60 2.03 40.83 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 13 H -0.29 -12.18 7.11 99.48 0.71 -11.48 16 14 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 15 C 0.57 21.73 7.21 86.72 0.62 22.35 16 16 O -0.58 -23.10 16.69 -3.98 -0.07 -23.17 16 17 C -0.18 -6.38 4.84 -19.97 -0.10 -6.48 16 18 C 0.16 5.21 10.88 85.03 0.92 6.13 16 19 N -0.48 -15.45 10.37 -307.01 -3.18 -18.63 16 20 C 0.30 9.65 7.54 85.01 0.64 10.29 16 21 C 0.04 1.32 6.54 38.19 0.25 1.57 16 22 C -0.03 -1.26 7.67 22.77 0.17 -1.09 16 23 N -0.65 -21.07 5.48 -302.57 -1.66 -22.73 16 24 C 0.49 14.06 7.95 87.62 0.70 14.75 16 25 O -0.54 -18.55 17.95 -3.07 -0.06 -18.60 16 26 C 0.06 1.19 7.16 71.26 0.51 1.70 16 27 O -0.29 -7.93 10.50 -90.85 -0.95 -8.89 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.09 2.93 8.03 -2.39 -0.02 2.91 16 34 H 0.10 3.04 7.54 -2.39 -0.02 3.02 16 35 H 0.02 1.18 7.55 -2.39 -0.02 1.16 16 36 H 0.02 1.17 5.72 -2.39 -0.01 1.15 16 37 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 38 H 0.19 5.10 8.06 -2.91 -0.02 5.08 16 39 H 0.17 6.91 4.85 -2.91 -0.01 6.89 16 40 H 0.42 14.18 8.89 -92.71 -0.82 13.35 16 41 H 0.19 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -62.68 360.82 0.10 -62.58 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: 0.26 Total: 28.81 kcal Atomic # 6 Polarization: 39.26 SS G_CDS: 6.95 Total: 46.20 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -6.56 Total: -112.74 kcal Atomic # 8 Polarization: -63.11 SS G_CDS: -2.57 Total: -65.68 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -62.68 0.10 -62.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611292822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.481 kcal (2) G-P(sol) polarization free energy of solvation -62.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds