Wall clock time and date at job start Tue Mar 31 2020 18:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34635 * 117.00063 * 2 1 4 4 O 1.21515 * 120.00132 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00172 * 180.02562 * 3 2 1 6 6 C 1.46931 * 120.62776 * 359.97438 * 5 3 2 7 7 C 1.53190 * 108.77628 * 126.37389 * 6 5 3 8 8 C 1.53041 * 109.31271 * 54.63127 * 7 6 5 9 9 C 1.53035 * 109.53753 * 298.63563 * 8 7 6 10 10 H 1.09000 * 109.49962 * 301.38156 * 9 8 7 11 11 N 1.46502 * 109.49852 * 181.31917 * 9 8 7 12 12 S 1.65598 * 120.00204 * 145.00288 * 11 9 8 13 13 O 1.42100 * 106.39953 * 311.45568 * 12 11 9 14 14 O 1.42105 * 106.40088 * 178.54259 * 12 11 9 15 15 N 1.65593 * 107.21993 * 65.00171 * 12 11 9 16 16 C 1.46502 * 119.99605 * 269.99784 * 15 12 11 17 17 C 1.46499 * 120.00395 * 90.00069 * 15 12 11 18 18 C 1.50701 * 109.46992 * 264.99836 * 17 15 12 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 15 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 15 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47294 * 60.00559 * 22 20 18 24 24 H 1.48503 * 109.46954 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47431 * 300.00157 * 22 20 18 26 26 C 1.46921 * 120.63075 * 179.97438 * 5 3 2 27 27 H 1.09000 * 109.46687 * 299.99862 * 1 2 3 28 28 H 1.08997 * 109.47432 * 59.99809 * 1 2 3 29 29 H 1.09004 * 109.47361 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.58677 * 6.58153 * 6 5 3 31 31 H 1.09001 * 109.69991 * 246.23135 * 6 5 3 32 32 H 1.09005 * 109.49450 * 294.67973 * 7 6 5 33 33 H 1.08999 * 109.49747 * 174.58785 * 7 6 5 34 34 H 1.09004 * 109.45384 * 178.61757 * 8 7 6 35 35 H 1.08992 * 109.46158 * 58.65912 * 8 7 6 36 36 H 0.97004 * 119.99921 * 324.99951 * 11 9 8 37 37 H 1.09000 * 109.47587 * 270.00096 * 16 15 12 38 38 H 1.08997 * 109.47205 * 30.00247 * 16 15 12 39 39 H 1.09003 * 109.46728 * 150.00070 * 16 15 12 40 40 H 1.09002 * 109.47391 * 144.99826 * 17 15 12 41 41 H 1.09001 * 109.46813 * 24.99883 * 17 15 12 42 42 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.58786 * 113.84292 * 26 5 3 44 44 H 1.08996 * 109.59015 * 353.41176 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.2229 0.0468 -0.0005 7 6 5.2117 0.1123 -1.1687 8 6 6.0227 1.4066 -1.0734 9 6 5.0809 2.6090 -1.1698 10 1 4.5344 2.5684 -2.1120 11 7 5.8612 3.8474 -1.1101 12 16 5.3881 5.1675 -1.9909 13 8 5.1383 4.7013 -3.3097 14 8 6.3172 6.2013 -1.6949 15 7 3.9286 5.6632 -1.3857 16 6 2.6846 5.1210 -1.9378 17 6 3.8813 6.6438 -0.2983 18 6 3.7780 5.9250 1.0222 19 1 3.7508 4.8457 1.0488 20 6 3.7194 6.6454 2.1964 21 7 3.7530 7.9596 2.1639 22 14 3.5921 5.7544 3.8332 23 1 4.7749 4.8742 4.0111 24 1 3.5440 6.7484 4.9355 25 1 2.3556 4.9322 3.8545 26 6 4.0905 2.5718 -0.0011 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.5758 -0.8225 -0.1178 31 1 4.7711 -0.0299 0.9385 32 1 4.6635 0.0949 -2.1107 33 1 5.8854 -0.7434 -1.1235 34 1 6.7441 1.4440 -1.8897 35 1 6.5511 1.4347 -0.1205 36 1 6.6550 3.8942 -0.5545 37 1 2.3493 5.7489 -2.7633 38 1 2.8588 4.1077 -2.2995 39 1 1.9199 5.1032 -1.1611 40 1 3.0132 7.2899 -0.4292 41 1 4.7889 7.2472 -0.3136 42 1 3.7114 8.4664 2.9900 43 1 4.6281 2.7033 0.9380 44 1 3.3562 3.3686 -0.1188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726599243.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:52 Heat of formation + Delta-G solvation = -150.566513 kcal Electronic energy + Delta-G solvation = -29726.727155 eV Core-core repulsion = 25613.355224 eV Total energy + Delta-G solvation = -4113.371931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.61692 -38.57480 -36.63638 -36.20114 -35.48412 -35.23210 -34.72578 -32.43808 -32.32436 -29.33245 -27.74814 -27.69537 -25.33803 -24.98149 -23.07721 -22.23751 -21.59585 -20.06791 -18.89842 -18.09818 -17.25943 -17.04501 -16.68230 -16.57544 -16.25153 -15.91654 -15.09562 -14.82150 -14.72110 -14.38540 -14.14307 -13.84798 -13.53583 -13.41845 -13.23464 -12.98700 -12.79904 -12.41524 -12.17593 -12.10605 -11.84680 -11.68628 -11.63494 -11.47974 -11.16843 -11.11934 -11.08813 -11.05069 -10.77713 -10.73376 -10.64266 -10.47109 -10.36818 -10.09848 -9.71616 -9.49336 -8.64438 -8.44743 -8.00918 -6.06648 -4.12356 1.26936 2.12929 2.88349 3.28132 3.33748 3.35554 3.46754 3.87563 4.15124 4.40194 4.60559 4.70527 4.72050 4.92590 5.00415 5.07757 5.15758 5.17347 5.27936 5.32747 5.37155 5.43001 5.59392 5.63811 5.68469 5.74102 5.84396 5.92001 6.06493 6.15957 6.19189 6.34070 6.39225 6.51205 6.66889 7.19723 7.33546 7.41794 7.50212 7.67687 7.90732 8.19403 8.33310 8.91464 9.53278 11.01576 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009294 B = 0.006214 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.074989 B = 4504.898016 C = 6000.270491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.375 6.375 3 C 0.644 3.356 4 O -0.555 6.555 5 N -0.592 5.592 6 C 0.109 3.891 7 C -0.133 4.133 8 C -0.125 4.125 9 C 0.143 3.857 10 H 0.091 0.909 11 N -1.118 6.118 12 S 2.786 3.214 13 O -1.000 7.000 14 O -0.977 6.977 15 N -0.995 5.995 16 C 0.105 3.895 17 C 0.245 3.755 18 C -0.539 4.539 19 H 0.067 0.933 20 C 0.065 3.935 21 N -0.890 5.890 22 Si 0.890 3.110 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.099 3.901 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.416 0.584 37 H 0.044 0.956 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.039 0.961 41 H 0.051 0.949 42 H 0.264 0.736 43 H 0.083 0.917 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.216 -18.730 -4.921 19.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.289 6.289 3 C 0.398 3.602 4 O -0.442 6.442 5 N -0.333 5.333 6 C -0.014 4.014 7 C -0.172 4.172 8 C -0.164 4.164 9 C 0.034 3.966 10 H 0.109 0.891 11 N -0.875 5.875 12 S 2.793 3.207 13 O -0.983 6.983 14 O -0.961 6.961 15 N -0.838 5.838 16 C -0.041 4.041 17 C 0.123 3.877 18 C -0.578 4.578 19 H 0.085 0.915 20 C -0.138 4.138 21 N -0.529 5.529 22 Si 0.718 3.282 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.024 4.024 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.249 0.751 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.101 0.899 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.209 -17.840 -5.652 18.716 hybrid contribution -0.153 -0.564 1.751 1.846 sum -0.362 -18.404 -3.901 18.817 Atomic orbital electron populations 1.23164 0.74665 1.03089 1.02922 1.86190 1.23968 1.31362 1.87398 1.18056 0.83190 0.82183 0.76777 1.91073 1.63861 1.34526 1.54769 1.46861 1.01903 1.08358 1.76222 1.21767 0.93945 0.86769 0.98908 1.21926 0.98176 0.97989 0.99074 1.21840 0.98014 0.93156 1.03413 1.21003 0.92177 0.84633 0.98826 0.89075 1.56071 1.38838 1.26874 1.65695 1.01749 0.73253 0.72523 0.73151 1.93543 1.86048 1.82231 1.36484 1.93597 1.62341 1.54771 1.85361 1.57584 1.19752 1.55748 1.50683 1.21272 0.87837 0.96466 0.98559 1.19227 0.99510 0.86563 0.82365 1.21617 1.51544 0.93784 0.90903 0.91525 1.24923 0.95023 0.94748 0.99071 1.69924 1.49749 1.05182 1.27997 0.86686 0.78687 0.79452 0.83364 1.20246 1.21247 1.20144 1.22624 0.96617 0.83849 0.99313 0.91839 0.91814 0.88272 0.88967 0.91033 0.91037 0.89995 0.90546 0.90759 0.75105 0.93709 0.93277 0.90202 0.94330 0.93084 0.92622 0.89899 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 10.56 101.05 1.07 1.61 16 2 O -0.37 -4.68 9.20 -40.31 -0.37 -5.05 16 3 C 0.64 10.01 8.43 54.06 0.46 10.46 16 4 O -0.56 -10.61 15.55 -19.28 -0.30 -10.91 16 5 N -0.59 -8.15 2.97 -178.54 -0.53 -8.68 16 6 C 0.11 1.04 6.45 -3.71 -0.02 1.02 16 7 C -0.13 -1.10 6.08 -26.61 -0.16 -1.27 16 8 C -0.13 -1.26 5.41 -26.69 -0.14 -1.40 16 9 C 0.14 1.98 2.96 -67.79 -0.20 1.78 16 10 H 0.09 1.33 7.06 -51.93 -0.37 0.96 16 11 N -1.12 -17.45 5.53 -4.77 -0.03 -17.48 16 12 S 2.79 54.91 6.09 -107.50 -0.65 54.25 16 13 O -1.00 -20.47 16.55 -57.17 -0.95 -21.41 16 14 O -0.98 -22.44 16.69 -57.17 -0.95 -23.40 16 15 N -0.99 -20.86 3.04 -123.05 -0.37 -21.23 16 16 C 0.11 1.96 9.12 59.85 0.55 2.50 16 17 C 0.25 6.14 5.41 -5.19 -0.03 6.11 16 18 C -0.54 -14.11 9.38 -34.44 -0.32 -14.43 16 19 H 0.07 1.65 5.34 -52.49 -0.28 1.37 16 20 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 22 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.10 1.54 5.17 -3.69 -0.02 1.52 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.79 6.93 -51.93 -0.36 0.43 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.42 5.70 8.84 -34.47 -0.30 5.39 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.83 7.31 -51.93 -0.38 0.45 16 39 H 0.08 1.56 8.07 -51.93 -0.42 1.14 16 40 H 0.04 1.01 8.11 -51.93 -0.42 0.59 16 41 H 0.05 1.40 6.91 -51.93 -0.36 1.04 16 42 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 43 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 44 H 0.12 2.31 4.18 -51.93 -0.22 2.09 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -34.67 366.61 -8.31 -42.99 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.47 Total: 4.67 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 1.07 Total: 9.59 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -0.19 Total: -72.36 kcal Atomic # 8 Polarization: -58.21 SS G_CDS: -2.57 Total: -60.78 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 54.91 SS G_CDS: -0.65 Total: 54.25 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.67 -8.31 -42.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726599243.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.580 kcal (2) G-P(sol) polarization free energy of solvation -34.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds