Wall clock time and date at job start Tue Mar 31 2020 18:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34635 * 117.00063 * 2 1 4 4 O 1.21515 * 120.00132 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00172 * 180.02562 * 3 2 1 6 6 C 1.46931 * 120.62776 * 359.97438 * 5 3 2 7 7 C 1.53190 * 108.77628 * 126.37389 * 6 5 3 8 8 C 1.53041 * 109.31271 * 54.63127 * 7 6 5 9 9 C 1.53035 * 109.53753 * 298.63563 * 8 7 6 10 10 H 1.09000 * 109.49962 * 301.38156 * 9 8 7 11 11 N 1.46502 * 109.49852 * 181.31917 * 9 8 7 12 12 S 1.65598 * 120.00204 * 145.00288 * 11 9 8 13 13 O 1.42100 * 106.39953 * 311.45568 * 12 11 9 14 14 O 1.42105 * 106.40088 * 178.54259 * 12 11 9 15 15 N 1.65593 * 107.21993 * 65.00171 * 12 11 9 16 16 C 1.46502 * 119.99605 * 269.99784 * 15 12 11 17 17 C 1.46499 * 120.00395 * 90.00069 * 15 12 11 18 18 C 1.50701 * 109.46992 * 264.99836 * 17 15 12 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 15 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 15 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47294 * 60.00559 * 22 20 18 24 24 H 1.48503 * 109.46954 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47431 * 300.00157 * 22 20 18 26 26 C 1.46921 * 120.63075 * 179.97438 * 5 3 2 27 27 H 1.09000 * 109.46687 * 299.99862 * 1 2 3 28 28 H 1.08997 * 109.47432 * 59.99809 * 1 2 3 29 29 H 1.09004 * 109.47361 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.58677 * 6.58153 * 6 5 3 31 31 H 1.09001 * 109.69991 * 246.23135 * 6 5 3 32 32 H 1.09005 * 109.49450 * 294.67973 * 7 6 5 33 33 H 1.08999 * 109.49747 * 174.58785 * 7 6 5 34 34 H 1.09004 * 109.45384 * 178.61757 * 8 7 6 35 35 H 1.08992 * 109.46158 * 58.65912 * 8 7 6 36 36 H 0.97004 * 119.99921 * 324.99951 * 11 9 8 37 37 H 1.09000 * 109.47587 * 270.00096 * 16 15 12 38 38 H 1.08997 * 109.47205 * 30.00247 * 16 15 12 39 39 H 1.09003 * 109.46728 * 150.00070 * 16 15 12 40 40 H 1.09002 * 109.47391 * 144.99826 * 17 15 12 41 41 H 1.09001 * 109.46813 * 24.99883 * 17 15 12 42 42 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.58786 * 113.84292 * 26 5 3 44 44 H 1.08996 * 109.59015 * 353.41176 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.2229 0.0468 -0.0005 7 6 5.2117 0.1123 -1.1687 8 6 6.0227 1.4066 -1.0734 9 6 5.0809 2.6090 -1.1698 10 1 4.5344 2.5684 -2.1120 11 7 5.8612 3.8474 -1.1101 12 16 5.3881 5.1675 -1.9909 13 8 5.1383 4.7013 -3.3097 14 8 6.3172 6.2013 -1.6949 15 7 3.9286 5.6632 -1.3857 16 6 2.6846 5.1210 -1.9378 17 6 3.8813 6.6438 -0.2983 18 6 3.7780 5.9250 1.0222 19 1 3.7508 4.8457 1.0488 20 6 3.7194 6.6454 2.1964 21 7 3.7530 7.9596 2.1639 22 14 3.5921 5.7544 3.8332 23 1 4.7749 4.8742 4.0111 24 1 3.5440 6.7484 4.9355 25 1 2.3556 4.9322 3.8545 26 6 4.0905 2.5718 -0.0011 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.5758 -0.8225 -0.1178 31 1 4.7711 -0.0299 0.9385 32 1 4.6635 0.0949 -2.1107 33 1 5.8854 -0.7434 -1.1235 34 1 6.7441 1.4440 -1.8897 35 1 6.5511 1.4347 -0.1205 36 1 6.6550 3.8942 -0.5545 37 1 2.3493 5.7489 -2.7633 38 1 2.8588 4.1077 -2.2995 39 1 1.9199 5.1032 -1.1611 40 1 3.0132 7.2899 -0.4292 41 1 4.7889 7.2472 -0.3136 42 1 3.7114 8.4664 2.9900 43 1 4.6281 2.7033 0.9380 44 1 3.3562 3.3686 -0.1188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726599243.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:51 Heat of formation + Delta-G solvation = -177.941550 kcal Electronic energy + Delta-G solvation = -29727.914226 eV Core-core repulsion = 25613.355224 eV Total energy + Delta-G solvation = -4114.559002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.69938 -39.59879 -38.31210 -37.32520 -37.25559 -36.93636 -35.90471 -34.47894 -33.24436 -30.46205 -29.67240 -28.54788 -26.83499 -26.21330 -24.25251 -23.95862 -22.60758 -21.13687 -20.37668 -19.18838 -18.88947 -18.49157 -18.14727 -18.01019 -17.70430 -17.27641 -16.71043 -16.10836 -15.82891 -15.62776 -15.20259 -15.14318 -14.93083 -14.75662 -14.56449 -14.09063 -13.99621 -13.90642 -13.81626 -13.43809 -13.27166 -13.19718 -13.05087 -12.96268 -12.93009 -12.69825 -12.46473 -12.37781 -12.01565 -11.98724 -11.95776 -11.76473 -11.69332 -11.61673 -11.47265 -10.79970 -10.56140 -9.81248 -9.71146 -8.16192 -6.28060 -0.32261 1.09318 1.38544 1.42059 1.48334 1.71776 1.95116 2.41371 2.57587 2.96746 3.15805 3.39363 3.65747 3.78284 3.91023 3.97553 4.06296 4.19128 4.38499 4.39271 4.45581 4.50129 4.58971 4.64503 4.71169 4.72779 4.83128 4.89786 4.96485 5.03555 5.07664 5.19468 5.28390 5.30259 5.40603 5.42464 5.52369 5.73186 5.84911 6.11741 6.15174 6.27023 6.83798 7.21388 7.41189 8.92267 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009294 B = 0.006214 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.074989 B = 4504.898016 C = 6000.270491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.366 6.366 3 C 0.638 3.362 4 O -0.602 6.602 5 N -0.589 5.589 6 C 0.102 3.898 7 C -0.125 4.125 8 C -0.121 4.121 9 C 0.141 3.859 10 H 0.084 0.916 11 N -1.105 6.105 12 S 2.801 3.199 13 O -1.005 7.005 14 O -1.012 7.012 15 N -1.001 6.001 16 C 0.107 3.893 17 C 0.260 3.740 18 C -0.540 4.540 19 H 0.079 0.921 20 C 0.012 3.988 21 N -0.928 5.928 22 Si 0.952 3.048 23 H -0.260 1.260 24 H -0.286 1.286 25 H -0.278 1.278 26 C 0.098 3.902 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.141 0.859 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.426 0.574 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.017 0.983 41 H 0.024 0.976 42 H 0.264 0.736 43 H 0.080 0.920 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.624 -22.343 -4.636 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.280 6.280 3 C 0.392 3.608 4 O -0.493 6.493 5 N -0.330 5.330 6 C -0.018 4.018 7 C -0.163 4.163 8 C -0.160 4.160 9 C 0.033 3.967 10 H 0.102 0.898 11 N -0.867 5.867 12 S 2.809 3.191 13 O -0.989 6.989 14 O -0.996 6.996 15 N -0.842 5.842 16 C -0.039 4.039 17 C 0.136 3.864 18 C -0.579 4.579 19 H 0.097 0.903 20 C -0.188 4.188 21 N -0.568 5.568 22 Si 0.777 3.223 23 H -0.184 1.184 24 H -0.211 1.211 25 H -0.204 1.204 26 C -0.025 4.025 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.159 0.841 30 H 0.124 0.876 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.136 0.864 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.262 0.738 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.035 0.965 41 H 0.042 0.958 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.648 -21.508 -5.383 22.180 hybrid contribution -0.464 0.470 1.600 1.731 sum 0.184 -21.038 -3.783 21.376 Atomic orbital electron populations 1.23480 0.73112 1.05597 1.02268 1.86206 1.25411 1.29451 1.86907 1.18335 0.83718 0.82381 0.76351 1.91043 1.65070 1.36213 1.56930 1.46958 1.01693 1.09032 1.75319 1.22115 0.94124 0.85210 1.00394 1.21934 0.98094 0.98138 0.98182 1.21882 0.97526 0.91796 1.04801 1.21197 0.92668 0.85194 0.97688 0.89804 1.55705 1.39143 1.26391 1.65429 1.01131 0.72312 0.72535 0.73145 1.93532 1.86022 1.82286 1.37016 1.93546 1.63278 1.56918 1.85862 1.57486 1.21224 1.55671 1.49820 1.21330 0.86677 0.97540 0.98387 1.18770 0.97151 0.86882 0.83551 1.21962 1.50192 0.94501 0.91237 0.90263 1.25749 0.94961 0.95387 1.02653 1.70057 1.51267 1.06702 1.28817 0.85707 0.78986 0.78412 0.79193 1.18402 1.21125 1.20363 1.22412 0.96071 0.84183 0.99864 0.92817 0.92270 0.84085 0.87581 0.89449 0.91427 0.86419 0.89321 0.89280 0.73760 0.92334 0.91636 0.91603 0.96497 0.95782 0.92672 0.90157 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.87 10.56 113.37 1.20 2.06 16 2 O -0.37 -8.47 9.20 -55.45 -0.51 -8.98 16 3 C 0.64 19.27 8.43 129.79 1.09 20.36 16 4 O -0.60 -23.36 15.55 19.79 0.31 -23.05 16 5 N -0.59 -15.17 2.97 -949.18 -2.82 -17.99 16 6 C 0.10 1.59 6.45 86.36 0.56 2.15 16 7 C -0.12 -1.54 6.08 30.67 0.19 -1.36 16 8 C -0.12 -1.99 5.41 30.62 0.17 -1.82 16 9 C 0.14 3.65 2.96 45.08 0.13 3.78 16 10 H 0.08 2.31 7.06 -2.39 -0.02 2.30 16 11 N -1.11 -33.28 5.53 -169.01 -0.94 -34.22 16 12 S 2.80 110.59 6.09 -56.49 -0.34 110.24 16 13 O -1.01 -40.51 16.55 -128.00 -2.12 -42.62 16 14 O -1.01 -47.29 16.69 -128.00 -2.14 -49.42 16 15 N -1.00 -42.93 3.04 -543.22 -1.65 -44.58 16 16 C 0.11 4.04 9.12 127.77 1.16 5.20 16 17 C 0.26 13.53 5.41 85.63 0.46 13.99 16 18 C -0.54 -28.79 9.38 25.60 0.24 -28.55 16 19 H 0.08 3.96 5.34 -2.91 -0.02 3.94 16 20 C 0.01 0.65 5.46 84.66 0.46 1.11 16 21 N -0.93 -54.98 13.29 21.45 0.28 -54.69 16 22 Si 0.95 43.51 29.54 68.60 2.03 45.53 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 24 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 26 C 0.10 2.97 5.17 86.38 0.45 3.42 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 29 H 0.14 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.11 1.39 6.93 -2.39 -0.02 1.38 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.43 11.06 8.84 -96.74 -0.86 10.20 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.07 2.24 7.31 -2.39 -0.02 2.22 16 39 H 0.07 2.67 8.07 -2.39 -0.02 2.65 16 40 H 0.02 0.94 8.11 -2.39 -0.02 0.92 16 41 H 0.02 1.38 6.91 -2.39 -0.02 1.37 16 42 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 43 H 0.08 2.42 8.08 -2.39 -0.02 2.41 16 44 H 0.09 3.30 4.18 -2.39 -0.01 3.29 16 Total: -1.00 -77.05 366.61 -1.61 -78.66 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.17 Total: 20.77 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: 6.11 Total: 20.36 kcal Atomic # 7 Polarization: -146.36 SS G_CDS: -5.12 Total: -151.48 kcal Atomic # 8 Polarization: -119.62 SS G_CDS: -4.46 Total: -124.08 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 110.59 SS G_CDS: -0.34 Total: 110.24 kcal Total: -77.05 -1.61 -78.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726599243.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.281 kcal (2) G-P(sol) polarization free energy of solvation -77.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds