Wall clock time and date at job start Tue Mar 31 2020 18:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34638 * 116.99755 * 2 1 4 4 O 1.21509 * 120.00434 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99363 * 180.02562 * 3 2 1 6 6 C 1.46923 * 120.63534 * 0.02562 * 5 3 2 7 7 C 1.53194 * 108.77834 * 233.63121 * 6 5 3 8 8 C 1.53044 * 109.31107 * 305.36541 * 7 6 5 9 9 C 1.53033 * 109.54038 * 61.35767 * 8 7 6 10 10 H 1.09003 * 109.49671 * 58.59364 * 9 8 7 11 11 N 1.46505 * 109.49972 * 178.65215 * 9 8 7 12 12 S 1.65598 * 120.00146 * 215.90397 * 11 9 8 13 13 O 1.42100 * 106.40035 * 178.01766 * 12 11 9 14 14 O 1.42109 * 106.40134 * 310.93700 * 12 11 9 15 15 N 1.65605 * 107.21920 * 64.47596 * 12 11 9 16 16 C 1.46493 * 119.99911 * 274.28030 * 15 12 11 17 17 C 1.46493 * 119.99502 * 94.28124 * 15 12 11 18 18 C 1.50703 * 109.47406 * 95.76792 * 17 15 12 19 19 H 1.08003 * 119.99790 * 4.91769 * 18 17 15 20 20 C 1.37876 * 119.99921 * 184.91475 * 18 17 15 21 21 N 1.31510 * 120.00396 * 5.09346 * 20 18 17 22 22 Si 1.86807 * 119.99527 * 185.09742 * 20 18 17 23 23 H 1.48499 * 109.47309 * 94.99420 * 22 20 18 24 24 H 1.48500 * 109.46770 * 214.99565 * 22 20 18 25 25 H 1.48500 * 109.47415 * 334.99271 * 22 20 18 26 26 C 1.47001 * 120.61402 * 180.02562 * 5 3 2 27 27 H 1.09007 * 109.46891 * 299.99909 * 1 2 3 28 28 H 1.08999 * 109.47447 * 59.99089 * 1 2 3 29 29 H 1.09000 * 109.47176 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.59301 * 113.83929 * 6 5 3 31 31 H 1.09003 * 109.58623 * 353.41642 * 6 5 3 32 32 H 1.08994 * 109.49968 * 185.40936 * 7 6 5 33 33 H 1.09007 * 109.49544 * 65.30669 * 7 6 5 34 34 H 1.09005 * 109.45323 * 301.34293 * 8 7 6 35 35 H 1.08990 * 109.45013 * 181.38084 * 8 7 6 36 36 H 0.96993 * 119.99860 * 35.90489 * 11 9 8 37 37 H 1.08996 * 109.47406 * 89.99978 * 16 15 12 38 38 H 1.09001 * 109.46802 * 209.99937 * 16 15 12 39 39 H 1.09004 * 109.47632 * 329.99931 * 16 15 12 40 40 H 1.09005 * 109.47156 * 215.76510 * 17 15 12 41 41 H 1.08996 * 109.47404 * 335.76504 * 17 15 12 42 42 H 0.97003 * 119.99924 * 179.97438 * 21 20 18 43 43 H 1.09007 * 109.62559 * 6.60151 * 26 5 3 44 44 H 1.08999 * 109.58581 * 246.15296 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.2229 0.0468 -0.0017 7 6 5.2126 0.1118 1.1658 8 6 6.0235 1.4062 1.0704 9 6 5.0818 2.6085 1.1679 10 1 4.5357 2.5674 2.1103 11 7 5.8622 3.8470 1.1088 12 16 5.4022 5.1593 2.0079 13 8 6.3740 6.1686 1.7710 14 8 4.0141 5.3447 1.7662 15 7 5.5467 4.7361 3.6024 16 6 4.4462 4.0458 4.2796 17 6 6.7749 5.0521 4.3356 18 6 6.5937 6.3469 5.0851 19 1 5.6329 6.8402 5.0862 20 6 7.6544 6.9017 5.7692 21 7 8.8480 6.3561 5.6864 22 14 7.3958 8.4285 6.8141 23 1 7.1545 8.0287 8.2237 24 1 8.6051 9.2874 6.7431 25 1 6.2221 9.1832 6.3058 26 6 4.0906 2.5726 0.0000 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 4.7705 -0.0271 -0.9412 31 1 3.5759 -0.8225 0.1158 32 1 5.8862 -0.7438 1.1198 33 1 4.6651 0.0942 2.1083 34 1 6.5512 1.4346 0.1170 35 1 6.7454 1.4432 1.8862 36 1 6.6484 3.8983 0.5430 37 1 4.5714 2.9685 4.1710 38 1 4.4499 4.3072 5.3378 39 1 3.4985 4.3481 3.8340 40 1 6.9927 4.2509 5.0420 41 1 7.6021 5.1517 3.6329 42 1 9.5943 6.7467 6.1675 43 1 3.3567 3.3698 0.1189 44 1 4.6275 2.7045 -0.9394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726599246.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:55 Heat of formation + Delta-G solvation = -149.745475 kcal Electronic energy + Delta-G solvation = -28606.653019 eV Core-core repulsion = 24493.316690 eV Total energy + Delta-G solvation = -4113.336328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.82412 -38.74305 -36.58767 -36.41390 -35.51810 -35.14698 -34.90796 -32.47474 -32.44056 -29.51730 -27.87613 -27.78175 -25.46527 -25.08620 -23.20799 -22.29693 -21.76807 -20.25498 -18.99063 -18.23741 -17.28821 -17.21679 -16.86090 -16.61246 -16.38767 -15.95209 -15.09654 -14.99576 -14.88119 -14.34754 -14.33061 -14.02327 -13.74084 -13.47637 -13.28528 -13.15574 -12.97346 -12.35220 -12.34153 -12.17291 -11.96281 -11.86364 -11.57320 -11.41000 -11.27433 -11.19157 -11.13782 -11.06163 -10.96939 -10.81796 -10.68445 -10.57141 -10.49203 -10.05254 -9.78643 -9.70314 -8.87378 -8.44257 -8.07795 -6.06979 -4.10557 1.19246 1.92965 2.65661 3.31297 3.38200 3.42230 3.45582 3.69243 4.11820 4.44451 4.48385 4.57393 4.62014 4.73751 4.91995 4.95167 4.99914 5.00611 5.17588 5.22140 5.27926 5.31259 5.41741 5.49040 5.57546 5.62208 5.69843 5.76545 5.92409 5.93918 6.03924 6.12901 6.22222 6.33883 6.54184 7.04157 7.10753 7.24396 7.41010 7.61016 7.91229 8.10326 8.20347 8.92052 9.54579 11.01713 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021463 B = 0.003142 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.258807 B = 8909.376250 C = 9209.047995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.372 6.372 3 C 0.647 3.353 4 O -0.563 6.563 5 N -0.592 5.592 6 C 0.109 3.891 7 C -0.134 4.134 8 C -0.128 4.128 9 C 0.144 3.856 10 H 0.089 0.911 11 N -1.127 6.127 12 S 2.777 3.223 13 O -0.961 6.961 14 O -0.990 6.990 15 N -0.994 5.994 16 C 0.092 3.908 17 C 0.256 3.744 18 C -0.532 4.532 19 H 0.061 0.939 20 C 0.063 3.937 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.272 1.272 26 C 0.108 3.892 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.414 0.586 37 H 0.037 0.963 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.030 0.970 41 H 0.045 0.955 42 H 0.264 0.736 43 H 0.111 0.889 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.106 -18.670 -11.692 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.286 6.286 3 C 0.401 3.599 4 O -0.450 6.450 5 N -0.333 5.333 6 C -0.013 4.013 7 C -0.173 4.173 8 C -0.167 4.167 9 C 0.035 3.965 10 H 0.107 0.893 11 N -0.884 5.884 12 S 2.784 3.216 13 O -0.945 6.945 14 O -0.974 6.974 15 N -0.837 5.837 16 C -0.054 4.054 17 C 0.134 3.866 18 C -0.572 4.572 19 H 0.079 0.921 20 C -0.140 4.140 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.015 4.015 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.247 0.753 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.130 0.870 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.666 -17.515 -11.843 23.248 hybrid contribution 0.396 0.486 0.583 0.856 sum -9.270 -17.029 -11.260 22.421 Atomic orbital electron populations 1.23196 0.74481 1.03317 1.02897 1.86208 1.24099 1.31096 1.87243 1.18041 0.83153 0.82184 0.76555 1.91052 1.64016 1.34768 1.55197 1.46852 1.01930 1.08363 1.76192 1.21808 0.93924 0.86541 0.99041 1.21943 0.98162 0.98192 0.99022 1.21886 0.98088 0.92999 1.03730 1.20986 0.91851 0.84781 0.98887 0.89299 1.56387 1.40661 1.29007 1.62321 1.02180 0.73443 0.72988 0.72984 1.93650 1.61852 1.54079 1.84912 1.93568 1.33779 1.84924 1.85088 1.57603 1.25606 1.73420 1.27100 1.21403 0.89036 0.94699 1.00302 1.19084 0.79424 0.95981 0.92119 1.21517 0.97091 1.07494 1.31083 0.92091 1.24935 0.94799 0.97423 0.96794 1.69925 0.99843 1.41196 1.42298 0.86499 0.77965 0.82759 0.80342 1.20633 1.21040 1.19677 1.22329 0.96169 0.84035 0.99006 0.91725 0.91891 0.88048 0.90943 0.88822 0.89771 0.90921 0.90830 0.90012 0.75311 0.94486 0.90239 0.91511 0.95164 0.93698 0.92685 0.87032 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -3.91 9.20 -40.32 -0.37 -4.29 16 3 C 0.65 8.59 8.43 54.06 0.46 9.04 16 4 O -0.56 -9.56 15.55 -19.28 -0.30 -9.86 16 5 N -0.59 -6.65 2.97 -178.48 -0.53 -7.18 16 6 C 0.11 0.82 6.45 -3.71 -0.02 0.80 16 7 C -0.13 -0.95 6.08 -26.61 -0.16 -1.12 16 8 C -0.13 -1.13 5.42 -26.69 -0.14 -1.27 16 9 C 0.14 1.74 2.84 -67.80 -0.19 1.55 16 10 H 0.09 1.16 6.23 -51.93 -0.32 0.84 16 11 N -1.13 -15.83 5.53 -4.77 -0.03 -15.86 16 12 S 2.78 55.05 6.01 -107.50 -0.65 54.40 16 13 O -0.96 -23.05 16.95 -57.17 -0.97 -24.02 16 14 O -0.99 -21.14 16.32 -57.17 -0.93 -22.07 16 15 N -0.99 -20.53 3.23 -123.06 -0.40 -20.93 16 16 C 0.09 1.59 9.87 59.84 0.59 2.18 16 17 C 0.26 6.37 5.12 -5.20 -0.03 6.34 16 18 C -0.53 -15.01 9.37 -34.44 -0.32 -15.33 16 19 H 0.06 1.73 7.82 -52.48 -0.41 1.31 16 20 C 0.06 1.79 5.45 -17.82 -0.10 1.69 16 21 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 22 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 26 C 0.11 1.33 6.05 -3.65 -0.02 1.31 16 27 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.63 6.93 -51.93 -0.36 0.27 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.41 4.87 8.85 -34.47 -0.30 4.56 16 37 H 0.04 0.52 7.32 -51.93 -0.38 0.14 16 38 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 39 H 0.07 1.13 7.06 -51.93 -0.37 0.76 16 40 H 0.03 0.75 8.11 -51.93 -0.42 0.33 16 41 H 0.05 1.20 7.45 -51.93 -0.39 0.81 16 42 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.11 1.76 6.73 -51.92 -0.35 1.41 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -37.02 371.70 -8.40 -45.41 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.66 Total: 0.59 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 1.12 Total: 6.70 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: -0.22 Total: -69.35 kcal Atomic # 8 Polarization: -57.66 SS G_CDS: -2.57 Total: -60.24 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 55.05 SS G_CDS: -0.65 Total: 54.40 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.02 -8.40 -45.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726599246.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.333 kcal (2) G-P(sol) polarization free energy of solvation -37.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds