Wall clock time and date at job start Tue Mar 31 2020 18:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34638 * 116.99755 * 2 1 4 4 O 1.21509 * 120.00434 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99363 * 180.02562 * 3 2 1 6 6 C 1.46923 * 120.63534 * 0.02562 * 5 3 2 7 7 C 1.53194 * 108.77834 * 233.63121 * 6 5 3 8 8 C 1.53044 * 109.31107 * 305.36541 * 7 6 5 9 9 C 1.53033 * 109.54038 * 61.35767 * 8 7 6 10 10 H 1.09003 * 109.49671 * 58.59364 * 9 8 7 11 11 N 1.46505 * 109.49972 * 178.65215 * 9 8 7 12 12 S 1.65598 * 120.00146 * 215.90397 * 11 9 8 13 13 O 1.42100 * 106.40035 * 178.01766 * 12 11 9 14 14 O 1.42109 * 106.40134 * 310.93700 * 12 11 9 15 15 N 1.65605 * 107.21920 * 64.47596 * 12 11 9 16 16 C 1.46493 * 119.99911 * 274.28030 * 15 12 11 17 17 C 1.46493 * 119.99502 * 94.28124 * 15 12 11 18 18 C 1.50703 * 109.47406 * 95.76792 * 17 15 12 19 19 H 1.08003 * 119.99790 * 4.91769 * 18 17 15 20 20 C 1.37876 * 119.99921 * 184.91475 * 18 17 15 21 21 N 1.31510 * 120.00396 * 5.09346 * 20 18 17 22 22 Si 1.86807 * 119.99527 * 185.09742 * 20 18 17 23 23 H 1.48499 * 109.47309 * 94.99420 * 22 20 18 24 24 H 1.48500 * 109.46770 * 214.99565 * 22 20 18 25 25 H 1.48500 * 109.47415 * 334.99271 * 22 20 18 26 26 C 1.47001 * 120.61402 * 180.02562 * 5 3 2 27 27 H 1.09007 * 109.46891 * 299.99909 * 1 2 3 28 28 H 1.08999 * 109.47447 * 59.99089 * 1 2 3 29 29 H 1.09000 * 109.47176 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.59301 * 113.83929 * 6 5 3 31 31 H 1.09003 * 109.58623 * 353.41642 * 6 5 3 32 32 H 1.08994 * 109.49968 * 185.40936 * 7 6 5 33 33 H 1.09007 * 109.49544 * 65.30669 * 7 6 5 34 34 H 1.09005 * 109.45323 * 301.34293 * 8 7 6 35 35 H 1.08990 * 109.45013 * 181.38084 * 8 7 6 36 36 H 0.96993 * 119.99860 * 35.90489 * 11 9 8 37 37 H 1.08996 * 109.47406 * 89.99978 * 16 15 12 38 38 H 1.09001 * 109.46802 * 209.99937 * 16 15 12 39 39 H 1.09004 * 109.47632 * 329.99931 * 16 15 12 40 40 H 1.09005 * 109.47156 * 215.76510 * 17 15 12 41 41 H 1.08996 * 109.47404 * 335.76504 * 17 15 12 42 42 H 0.97003 * 119.99924 * 179.97438 * 21 20 18 43 43 H 1.09007 * 109.62559 * 6.60151 * 26 5 3 44 44 H 1.08999 * 109.58581 * 246.15296 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.2229 0.0468 -0.0017 7 6 5.2126 0.1118 1.1658 8 6 6.0235 1.4062 1.0704 9 6 5.0818 2.6085 1.1679 10 1 4.5357 2.5674 2.1103 11 7 5.8622 3.8470 1.1088 12 16 5.4022 5.1593 2.0079 13 8 6.3740 6.1686 1.7710 14 8 4.0141 5.3447 1.7662 15 7 5.5467 4.7361 3.6024 16 6 4.4462 4.0458 4.2796 17 6 6.7749 5.0521 4.3356 18 6 6.5937 6.3469 5.0851 19 1 5.6329 6.8402 5.0862 20 6 7.6544 6.9017 5.7692 21 7 8.8480 6.3561 5.6864 22 14 7.3958 8.4285 6.8141 23 1 7.1545 8.0287 8.2237 24 1 8.6051 9.2874 6.7431 25 1 6.2221 9.1832 6.3058 26 6 4.0906 2.5726 0.0000 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 4.7705 -0.0271 -0.9412 31 1 3.5759 -0.8225 0.1158 32 1 5.8862 -0.7438 1.1198 33 1 4.6651 0.0942 2.1083 34 1 6.5512 1.4346 0.1170 35 1 6.7454 1.4432 1.8862 36 1 6.6484 3.8983 0.5430 37 1 4.5714 2.9685 4.1710 38 1 4.4499 4.3072 5.3378 39 1 3.4985 4.3481 3.8340 40 1 6.9927 4.2509 5.0420 41 1 7.6021 5.1517 3.6329 42 1 9.5943 6.7467 6.1675 43 1 3.3567 3.3698 0.1189 44 1 4.6275 2.7045 -0.9394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726599246.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:54 Heat of formation + Delta-G solvation = -179.425642 kcal Electronic energy + Delta-G solvation = -28607.940047 eV Core-core repulsion = 24493.316690 eV Total energy + Delta-G solvation = -4114.623357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.74365 -39.62465 -38.28242 -37.39352 -37.25107 -36.88319 -35.96440 -34.52226 -33.26792 -30.49616 -29.69408 -28.56836 -26.83933 -26.24403 -24.22902 -24.03823 -22.63701 -21.17695 -20.39980 -19.15869 -18.93341 -18.44608 -18.27771 -18.11992 -17.65967 -17.30605 -16.71334 -16.09177 -15.86341 -15.66269 -15.24784 -15.12538 -14.96786 -14.79671 -14.56119 -14.15097 -14.00744 -13.86681 -13.84783 -13.39018 -13.27069 -13.13708 -13.06946 -12.99818 -12.94410 -12.66977 -12.52011 -12.39648 -12.06788 -12.02764 -11.96094 -11.80190 -11.79014 -11.63882 -11.52536 -10.86399 -10.59098 -9.84988 -9.75542 -8.21719 -6.33112 -0.38023 1.06418 1.38464 1.40410 1.51335 1.66360 1.99408 2.39667 2.60656 2.93026 3.08987 3.41696 3.61410 3.73175 3.91255 4.00041 4.06806 4.15551 4.35804 4.37752 4.39435 4.48888 4.57633 4.63058 4.70284 4.73585 4.80344 4.82128 4.93013 5.01743 5.06957 5.18244 5.21553 5.26806 5.39533 5.40791 5.45749 5.67814 5.84601 6.08281 6.14331 6.21401 6.75049 7.15490 7.35642 8.86030 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021463 B = 0.003142 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.258807 B = 8909.376250 C = 9209.047995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.365 6.365 3 C 0.640 3.360 4 O -0.611 6.611 5 N -0.588 5.588 6 C 0.105 3.895 7 C -0.128 4.128 8 C -0.123 4.123 9 C 0.139 3.861 10 H 0.078 0.922 11 N -1.108 6.108 12 S 2.792 3.208 13 O -1.008 7.008 14 O -1.010 7.010 15 N -1.001 6.001 16 C 0.087 3.913 17 C 0.271 3.729 18 C -0.556 4.556 19 H 0.050 0.950 20 C 0.014 3.986 21 N -0.921 5.921 22 Si 0.956 3.044 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.275 1.275 26 C 0.108 3.892 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.141 0.859 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.427 0.573 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.030 0.970 41 H 0.024 0.976 42 H 0.268 0.732 43 H 0.072 0.928 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.847 -21.017 -11.974 25.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.278 6.278 3 C 0.395 3.605 4 O -0.502 6.502 5 N -0.329 5.329 6 C -0.015 4.015 7 C -0.167 4.167 8 C -0.162 4.162 9 C 0.031 3.969 10 H 0.096 0.904 11 N -0.870 5.870 12 S 2.800 3.200 13 O -0.992 6.992 14 O -0.993 6.993 15 N -0.843 5.843 16 C -0.058 4.058 17 C 0.148 3.852 18 C -0.595 4.595 19 H 0.069 0.931 20 C -0.186 4.186 21 N -0.560 5.560 22 Si 0.781 3.219 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.200 1.200 26 C -0.015 4.015 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.159 0.841 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.133 0.867 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.264 0.736 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.048 0.952 41 H 0.042 0.958 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.406 -19.908 -12.123 25.136 hybrid contribution 0.246 1.105 0.599 1.281 sum -9.160 -18.803 -11.525 23.881 Atomic orbital electron populations 1.23507 0.73011 1.05710 1.02327 1.86223 1.25495 1.29323 1.86773 1.18323 0.83740 0.82286 0.76142 1.91019 1.65266 1.36496 1.57457 1.46971 1.01590 1.09123 1.75174 1.22127 0.93911 0.85053 1.00454 1.21952 0.98181 0.98145 0.98387 1.21907 0.97470 0.91886 1.04938 1.21230 0.92439 0.84921 0.98342 0.90426 1.55804 1.41359 1.28563 1.61284 1.01408 0.72417 0.73188 0.72949 1.93579 1.62996 1.57036 1.85566 1.93546 1.34843 1.85617 1.85270 1.57458 1.25180 1.74083 1.27545 1.21594 0.87939 0.96563 0.99710 1.18661 0.80373 0.94766 0.91448 1.21864 0.96823 1.08917 1.31890 0.93123 1.25736 0.94593 1.00401 0.97886 1.70006 1.00458 1.42566 1.43019 0.85579 0.77782 0.79215 0.79347 1.18931 1.20395 1.19979 1.22196 0.95336 0.83875 1.00136 0.92601 0.92291 0.84074 0.88584 0.87679 0.86665 0.91734 0.88649 0.90154 0.73615 0.90871 0.90698 0.91461 0.95154 0.95842 0.92292 0.90955 0.88154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.68 10.56 113.37 1.20 1.88 16 2 O -0.37 -7.12 9.20 -55.48 -0.51 -7.63 16 3 C 0.64 16.68 8.43 129.79 1.09 17.78 16 4 O -0.61 -21.39 15.55 19.81 0.31 -21.08 16 5 N -0.59 -12.28 2.97 -948.99 -2.82 -15.10 16 6 C 0.11 1.22 6.45 86.36 0.56 1.77 16 7 C -0.13 -1.34 6.08 30.67 0.19 -1.15 16 8 C -0.12 -1.78 5.42 30.62 0.17 -1.61 16 9 C 0.14 3.17 2.84 45.08 0.13 3.29 16 10 H 0.08 1.95 6.23 -2.39 -0.01 1.94 16 11 N -1.11 -30.46 5.53 -169.02 -0.93 -31.39 16 12 S 2.79 112.81 6.01 -56.49 -0.34 112.47 16 13 O -1.01 -49.78 16.95 -128.00 -2.17 -51.95 16 14 O -1.01 -44.23 16.32 -128.00 -2.09 -46.32 16 15 N -1.00 -41.76 3.23 -543.25 -1.75 -43.52 16 16 C 0.09 2.99 9.87 127.77 1.26 4.25 16 17 C 0.27 13.72 5.12 85.64 0.44 14.16 16 18 C -0.56 -31.82 9.37 25.60 0.24 -31.58 16 19 H 0.05 2.93 7.82 -2.91 -0.02 2.90 16 20 C 0.01 0.78 5.45 84.65 0.46 1.25 16 21 N -0.92 -54.10 13.29 21.45 0.28 -53.81 16 22 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 23 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 26 C 0.11 2.59 6.05 86.36 0.52 3.11 16 27 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.10 1.03 6.93 -2.39 -0.02 1.02 16 32 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.43 9.58 8.85 -96.76 -0.86 8.72 16 37 H 0.07 1.95 7.32 -2.39 -0.02 1.94 16 38 H 0.07 2.61 8.07 -2.39 -0.02 2.59 16 39 H 0.07 2.28 7.06 -2.38 -0.02 2.27 16 40 H 0.03 1.52 8.11 -2.38 -0.02 1.50 16 41 H 0.02 1.29 7.45 -2.39 -0.02 1.27 16 42 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 43 H 0.07 2.35 6.73 -2.38 -0.02 2.33 16 44 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -82.67 371.70 -1.59 -84.26 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.16 Total: 13.97 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 6.25 Total: 13.15 kcal Atomic # 7 Polarization: -138.60 SS G_CDS: -5.22 Total: -143.82 kcal Atomic # 8 Polarization: -122.52 SS G_CDS: -4.46 Total: -126.98 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: 112.81 SS G_CDS: -0.34 Total: 112.47 kcal Total: -82.67 -1.59 -84.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726599246.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.169 kcal (2) G-P(sol) polarization free energy of solvation -82.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds