Wall clock time and date at job start Tue Mar 31 2020 18:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46564 * 2 1 4 4 O 1.42898 * 109.47123 * 240.00190 * 2 1 3 5 5 C 1.34906 * 117.00351 * 89.99815 * 4 2 1 6 6 O 1.21620 * 119.99790 * 359.97438 * 5 4 2 7 7 C 1.46231 * 120.00158 * 180.02562 * 5 4 2 8 8 C 1.34911 * 120.00182 * 173.16784 * 7 5 4 9 9 C 1.47178 * 120.00070 * 345.61255 * 8 7 5 10 10 C 1.39869 * 120.16214 * 131.34346 * 9 8 7 11 11 C 1.37877 * 119.87638 * 179.97438 * 10 9 8 12 12 C 1.38389 * 120.20180 * 0.02562 * 11 10 9 13 13 C 1.38606 * 120.31927 * 359.97438 * 12 11 10 14 14 F 1.35100 * 119.93590 * 180.02562 * 13 12 11 15 15 C 1.38133 * 120.11913 * 359.74253 * 13 12 11 16 16 C 1.50700 * 109.47356 * 119.99685 * 2 1 3 17 17 O 1.21274 * 119.99993 * 105.50948 * 16 2 1 18 18 N 1.34785 * 119.99898 * 285.50971 * 16 2 1 19 19 C 1.46496 * 119.99693 * 4.67307 * 18 16 2 20 20 C 1.46499 * 119.99551 * 184.95173 * 18 16 2 21 21 C 1.50700 * 109.47075 * 269.72300 * 20 18 16 22 22 H 1.08007 * 119.99711 * 359.97438 * 21 20 18 23 23 C 1.37872 * 120.00377 * 180.02562 * 21 20 18 24 24 N 1.31518 * 119.99799 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00465 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46839 * 60.00033 * 25 23 21 27 27 H 1.48501 * 109.47451 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46924 * 300.00358 * 25 23 21 29 29 H 1.09002 * 109.47034 * 293.50343 * 1 2 3 30 30 H 1.08990 * 109.47090 * 53.50675 * 1 2 3 31 31 H 1.09004 * 109.46637 * 173.50772 * 1 2 3 32 32 H 1.08006 * 120.00206 * 353.16741 * 7 5 4 33 33 H 1.07999 * 119.99959 * 165.60521 * 8 7 5 34 34 H 1.07997 * 120.06224 * 359.95773 * 10 9 8 35 35 H 1.08005 * 119.89693 * 180.02562 * 11 10 9 36 36 H 1.07997 * 119.83984 * 180.02562 * 12 11 10 37 37 H 1.08007 * 120.09890 * 180.27752 * 15 13 12 38 38 H 1.09004 * 109.47308 * 268.42069 * 19 18 16 39 39 H 1.09004 * 109.47497 * 28.42892 * 19 18 16 40 40 H 1.09003 * 109.46542 * 148.42622 * 19 18 16 41 41 H 1.08996 * 109.47541 * 29.72104 * 20 18 16 42 42 H 1.08996 * 109.46935 * 149.72673 * 20 18 16 43 43 H 0.96995 * 120.00181 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2105 0.0786 -2.2679 6 8 1.9893 1.2742 -2.2372 7 6 2.6967 -0.5436 -3.4987 8 6 2.7700 0.1782 -4.6361 9 6 2.0787 1.4740 -4.7312 10 6 2.7574 2.5990 -5.2110 11 6 2.1039 3.8100 -5.2981 12 6 0.7792 3.9156 -4.9118 13 6 0.0988 2.8061 -4.4352 14 9 -1.1945 2.9178 -4.0607 15 6 0.7389 1.5851 -4.3479 16 6 2.0324 -0.7103 1.2305 17 8 2.4994 -1.8258 1.1385 18 7 1.9628 -0.1059 2.4332 19 6 1.3066 1.1977 2.5609 20 6 2.5488 -0.7497 3.6115 21 6 1.5126 -1.6188 4.2764 22 1 0.5170 -1.6846 3.8628 23 6 1.8352 -2.3291 5.4132 24 7 3.0470 -2.2478 5.9176 25 14 0.5506 -3.4059 6.2378 26 1 0.0902 -4.4462 5.2833 27 1 1.1442 -4.0577 7.4328 28 1 -0.6039 -2.5692 6.6530 29 1 -0.3633 0.4098 0.9424 30 1 -0.3633 0.6111 -0.8261 31 1 -0.3633 -1.0211 -0.1162 32 1 2.9973 -1.5810 -3.4971 33 1 3.3360 -0.1949 -5.4769 34 1 3.7914 2.5194 -5.5124 35 1 2.6275 4.6788 -5.6689 36 1 0.2729 4.8669 -4.9829 37 1 0.2070 0.7198 -3.9806 38 1 2.0449 1.9899 2.4366 39 1 0.5376 1.2940 1.7944 40 1 0.8491 1.2789 3.5469 41 1 3.3962 -1.3635 3.3064 42 1 2.8866 0.0137 4.3123 43 1 3.2741 -2.7478 6.7171 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728921610.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:04 Heat of formation + Delta-G solvation = -103.032672 kcal Electronic energy + Delta-G solvation = -28472.473937 eV Core-core repulsion = 24205.799315 eV Total energy + Delta-G solvation = -4266.674622 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.06211 -40.87958 -39.45435 -38.70232 -36.59095 -34.88786 -34.26014 -32.85027 -31.63838 -30.85314 -30.09068 -27.72054 -26.22053 -25.46064 -24.09940 -23.04376 -22.68437 -21.78739 -19.89169 -18.86399 -18.41474 -17.24318 -16.70252 -16.54769 -16.53138 -16.25195 -15.93878 -15.87937 -15.67704 -15.09529 -14.58046 -14.47399 -14.39785 -14.11051 -13.55265 -13.47530 -13.41780 -13.03032 -12.77468 -12.50227 -12.42755 -12.13021 -12.10815 -12.06342 -11.63926 -11.43357 -11.34070 -11.19324 -10.89044 -10.68887 -10.63346 -10.51992 -10.24833 -10.16034 -9.66227 -8.99519 -8.89163 -8.72530 -8.44120 -7.71365 -6.05151 -4.10019 0.24085 0.96838 1.27373 2.55554 2.78124 3.25938 3.32292 3.34607 3.36454 3.40697 3.91164 3.95412 4.27668 4.43712 4.48242 4.67100 4.71033 4.78884 4.84179 4.97214 5.04927 5.12471 5.14824 5.29264 5.38026 5.43971 5.55199 5.65949 5.69690 5.74438 5.80029 5.89036 5.89091 6.02397 6.08021 6.10198 6.28097 6.43472 6.60575 6.99237 7.38279 7.47025 7.73149 7.90704 8.20699 8.30570 8.85435 9.00037 9.54802 11.03083 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022014 B = 0.002467 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.584598 B =11347.316262 C =11766.914060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 H 0.101 0.899 4 O -0.317 6.317 5 C 0.484 3.516 6 O -0.497 6.497 7 C -0.170 4.170 8 C -0.023 4.023 9 C -0.037 4.037 10 C -0.110 4.110 11 C -0.095 4.095 12 C -0.148 4.148 13 C 0.098 3.902 14 F -0.141 7.141 15 C -0.104 4.104 16 C 0.507 3.493 17 O -0.518 6.518 18 N -0.596 5.596 19 C 0.068 3.932 20 C 0.247 3.753 21 C -0.527 4.527 22 H 0.058 0.942 23 C 0.061 3.939 24 N -0.895 5.895 25 Si 0.899 3.101 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.277 1.277 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.044 0.956 42 H 0.036 0.964 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.449 11.952 -24.656 27.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.012 3.988 3 H 0.119 0.881 4 O -0.232 6.232 5 C 0.329 3.671 6 O -0.387 6.387 7 C -0.189 4.189 8 C -0.042 4.042 9 C -0.037 4.037 10 C -0.128 4.128 11 C -0.113 4.113 12 C -0.166 4.166 13 C 0.079 3.921 14 F -0.119 7.119 15 C -0.123 4.123 16 C 0.292 3.708 17 O -0.393 6.393 18 N -0.330 5.330 19 C -0.076 4.076 20 C 0.129 3.871 21 C -0.566 4.566 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.534 5.534 25 Si 0.727 3.273 26 H -0.201 1.201 27 H -0.212 1.212 28 H -0.202 1.202 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.171 0.829 33 H 0.170 0.830 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.202 11.636 -24.445 27.162 hybrid contribution -0.964 -0.429 0.855 1.358 sum -3.166 11.207 -23.589 26.307 Atomic orbital electron populations 1.22324 0.92558 1.04050 1.03887 1.22236 0.95836 0.97581 0.83192 0.88111 1.86324 1.76352 1.41028 1.19506 1.21517 0.74854 0.85627 0.85092 1.90933 1.47655 1.15791 1.84315 1.22455 1.04893 1.01543 0.90023 1.22501 0.92968 0.91548 0.97148 1.18714 0.92860 0.93774 0.98333 1.21242 0.99930 0.92020 0.99635 1.20865 0.93602 0.97824 0.99032 1.21208 0.95779 0.97973 1.01678 1.17479 0.79161 0.94689 1.00807 1.91506 1.34416 1.96760 1.89255 1.21090 0.94719 0.96804 0.99653 1.19812 0.80595 0.86623 0.83816 1.90701 1.44930 1.18182 1.85518 1.48078 1.56353 1.19883 1.08694 1.21966 0.97088 0.85031 1.03501 1.19336 0.94498 0.92990 0.80302 1.21378 0.97894 1.27331 1.09962 0.92413 1.24936 0.95598 0.96609 0.96953 1.69921 1.18823 1.42214 1.22472 0.86540 0.81359 0.80714 0.78711 1.20125 1.21157 1.20237 0.89219 0.91365 0.90700 0.82930 0.82960 0.85171 0.84956 0.84914 0.85460 0.93453 0.91585 0.90284 0.93843 0.94643 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 9.15 37.16 0.34 -2.12 16 2 C 0.07 1.20 2.12 -27.88 -0.06 1.14 16 3 H 0.10 1.61 6.65 -51.93 -0.35 1.26 16 4 O -0.32 -5.32 9.34 -47.70 -0.45 -5.77 16 5 C 0.48 6.71 7.12 33.94 0.24 6.95 16 6 O -0.50 -7.42 12.11 -19.36 -0.23 -7.65 16 7 C -0.17 -1.65 10.02 -37.55 -0.38 -2.03 16 8 C -0.02 -0.18 9.76 -37.13 -0.36 -0.54 16 9 C -0.04 -0.34 4.20 -105.07 -0.44 -0.79 16 10 C -0.11 -0.88 9.79 -39.10 -0.38 -1.26 16 11 C -0.10 -0.73 10.03 -39.66 -0.40 -1.13 16 12 C -0.15 -1.33 10.02 -39.39 -0.39 -1.73 16 13 C 0.10 1.08 7.29 -39.48 -0.29 0.80 16 14 F -0.14 -1.70 17.26 2.25 0.04 -1.66 16 15 C -0.10 -1.13 7.03 -39.03 -0.27 -1.41 16 16 C 0.51 11.09 6.99 -10.98 -0.08 11.01 16 17 O -0.52 -13.66 16.19 -13.92 -0.23 -13.88 16 18 N -0.60 -12.94 2.86 -182.96 -0.52 -13.46 16 19 C 0.07 1.10 9.87 59.84 0.59 1.69 16 20 C 0.25 6.54 5.14 -5.19 -0.03 6.51 16 21 C -0.53 -15.02 9.39 -34.44 -0.32 -15.35 16 22 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 23 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 24 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 25 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H 0.09 1.21 5.51 -51.93 -0.29 0.93 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.15 1.19 8.06 -52.48 -0.42 0.76 16 33 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.13 1.39 7.68 -52.48 -0.40 0.99 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.90 4.21 -51.93 -0.22 0.68 16 40 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 41 H 0.04 1.29 7.49 -51.93 -0.39 0.90 16 42 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 373.81 15.07 5.63 5.63 Total: -1.00 -35.77 373.81 -7.78 -43.55 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -5.41 Total: -1.13 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -2.33 Total: 3.42 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.21 Total: -39.43 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.91 Total: -27.31 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.77 -7.78 -43.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728921610.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.486 kcal (2) G-P(sol) polarization free energy of solvation -35.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds