Wall clock time and date at job start Tue Mar 31 2020 18:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46564 * 2 1 4 4 O 1.42898 * 109.47123 * 240.00190 * 2 1 3 5 5 C 1.34906 * 117.00351 * 89.99815 * 4 2 1 6 6 O 1.21620 * 119.99790 * 359.97438 * 5 4 2 7 7 C 1.46231 * 120.00158 * 180.02562 * 5 4 2 8 8 C 1.34911 * 120.00182 * 173.16784 * 7 5 4 9 9 C 1.47178 * 120.00070 * 345.61255 * 8 7 5 10 10 C 1.39869 * 120.16214 * 131.34346 * 9 8 7 11 11 C 1.37877 * 119.87638 * 179.97438 * 10 9 8 12 12 C 1.38389 * 120.20180 * 0.02562 * 11 10 9 13 13 C 1.38606 * 120.31927 * 359.97438 * 12 11 10 14 14 F 1.35100 * 119.93590 * 180.02562 * 13 12 11 15 15 C 1.38133 * 120.11913 * 359.74253 * 13 12 11 16 16 C 1.50700 * 109.47356 * 119.99685 * 2 1 3 17 17 O 1.21274 * 119.99993 * 105.50948 * 16 2 1 18 18 N 1.34785 * 119.99898 * 285.50971 * 16 2 1 19 19 C 1.46496 * 119.99693 * 4.67307 * 18 16 2 20 20 C 1.46499 * 119.99551 * 184.95173 * 18 16 2 21 21 C 1.50700 * 109.47075 * 269.72300 * 20 18 16 22 22 H 1.08007 * 119.99711 * 359.97438 * 21 20 18 23 23 C 1.37872 * 120.00377 * 180.02562 * 21 20 18 24 24 N 1.31518 * 119.99799 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00465 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46839 * 60.00033 * 25 23 21 27 27 H 1.48501 * 109.47451 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46924 * 300.00358 * 25 23 21 29 29 H 1.09002 * 109.47034 * 293.50343 * 1 2 3 30 30 H 1.08990 * 109.47090 * 53.50675 * 1 2 3 31 31 H 1.09004 * 109.46637 * 173.50772 * 1 2 3 32 32 H 1.08006 * 120.00206 * 353.16741 * 7 5 4 33 33 H 1.07999 * 119.99959 * 165.60521 * 8 7 5 34 34 H 1.07997 * 120.06224 * 359.95773 * 10 9 8 35 35 H 1.08005 * 119.89693 * 180.02562 * 11 10 9 36 36 H 1.07997 * 119.83984 * 180.02562 * 12 11 10 37 37 H 1.08007 * 120.09890 * 180.27752 * 15 13 12 38 38 H 1.09004 * 109.47308 * 268.42069 * 19 18 16 39 39 H 1.09004 * 109.47497 * 28.42892 * 19 18 16 40 40 H 1.09003 * 109.46542 * 148.42622 * 19 18 16 41 41 H 1.08996 * 109.47541 * 29.72104 * 20 18 16 42 42 H 1.08996 * 109.46935 * 149.72673 * 20 18 16 43 43 H 0.96995 * 120.00181 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2105 0.0786 -2.2679 6 8 1.9893 1.2742 -2.2372 7 6 2.6967 -0.5436 -3.4987 8 6 2.7700 0.1782 -4.6361 9 6 2.0787 1.4740 -4.7312 10 6 2.7574 2.5990 -5.2110 11 6 2.1039 3.8100 -5.2981 12 6 0.7792 3.9156 -4.9118 13 6 0.0988 2.8061 -4.4352 14 9 -1.1945 2.9178 -4.0607 15 6 0.7389 1.5851 -4.3479 16 6 2.0324 -0.7103 1.2305 17 8 2.4994 -1.8258 1.1385 18 7 1.9628 -0.1059 2.4332 19 6 1.3066 1.1977 2.5609 20 6 2.5488 -0.7497 3.6115 21 6 1.5126 -1.6188 4.2764 22 1 0.5170 -1.6846 3.8628 23 6 1.8352 -2.3291 5.4132 24 7 3.0470 -2.2478 5.9176 25 14 0.5506 -3.4059 6.2378 26 1 0.0902 -4.4462 5.2833 27 1 1.1442 -4.0577 7.4328 28 1 -0.6039 -2.5692 6.6530 29 1 -0.3633 0.4098 0.9424 30 1 -0.3633 0.6111 -0.8261 31 1 -0.3633 -1.0211 -0.1162 32 1 2.9973 -1.5810 -3.4971 33 1 3.3360 -0.1949 -5.4769 34 1 3.7914 2.5194 -5.5124 35 1 2.6275 4.6788 -5.6689 36 1 0.2729 4.8669 -4.9829 37 1 0.2070 0.7198 -3.9806 38 1 2.0449 1.9899 2.4366 39 1 0.5376 1.2940 1.7944 40 1 0.8491 1.2789 3.5469 41 1 3.3962 -1.3635 3.3064 42 1 2.8866 0.0137 4.3123 43 1 3.2741 -2.7478 6.7171 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728921610.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:03 Heat of formation + Delta-G solvation = -123.682304 kcal Electronic energy + Delta-G solvation = -28473.369372 eV Core-core repulsion = 24205.799315 eV Total energy + Delta-G solvation = -4267.570057 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.89527 -42.04521 -40.70692 -39.78373 -37.76008 -36.71733 -35.01517 -34.87676 -33.08429 -31.53303 -30.82722 -29.65567 -27.72742 -26.51517 -25.65579 -24.26796 -23.51812 -22.93323 -20.82962 -20.46516 -19.34234 -18.71239 -18.31009 -17.93768 -17.38903 -17.24148 -17.17619 -17.01073 -16.65889 -16.55195 -16.15424 -16.00687 -15.25021 -14.99995 -14.73332 -14.67431 -14.37818 -14.21191 -14.15596 -13.73824 -13.68563 -13.59266 -13.37650 -13.16571 -13.08528 -12.89821 -12.71793 -12.62433 -12.39955 -12.19501 -12.11992 -11.88048 -11.74828 -11.60646 -10.93443 -10.65910 -10.63037 -9.71387 -9.55087 -9.42622 -8.24336 -6.38987 -0.47898 0.27007 0.56289 1.36010 1.36776 1.40927 1.47770 1.59494 1.86468 2.33625 2.45845 2.68171 3.05593 3.26720 3.36628 3.58612 3.66726 3.80058 3.81878 3.86982 4.08872 4.16639 4.18215 4.38411 4.49087 4.52914 4.55509 4.61243 4.77140 4.81564 4.88857 4.92632 5.04194 5.07423 5.14324 5.15647 5.22442 5.32555 5.42175 5.45716 5.50028 5.76019 5.94775 6.01863 6.52281 6.69049 6.69492 7.18007 7.34243 8.83173 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022014 B = 0.002467 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.584598 B =11347.316262 C =11766.914060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.084 3.916 3 H 0.114 0.886 4 O -0.341 6.341 5 C 0.479 3.521 6 O -0.513 6.513 7 C -0.199 4.199 8 C 0.014 3.986 9 C -0.057 4.057 10 C -0.106 4.106 11 C -0.094 4.094 12 C -0.152 4.152 13 C 0.068 3.932 14 F -0.155 7.155 15 C -0.120 4.120 16 C 0.499 3.501 17 O -0.576 6.576 18 N -0.601 5.601 19 C 0.062 3.938 20 C 0.260 3.740 21 C -0.544 4.544 22 H 0.055 0.945 23 C 0.008 3.992 24 N -0.928 5.928 25 Si 0.969 3.031 26 H -0.278 1.278 27 H -0.277 1.277 28 H -0.259 1.259 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.169 0.831 33 H 0.200 0.800 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.148 0.852 37 H 0.116 0.884 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.078 0.922 41 H -0.001 1.001 42 H 0.031 0.969 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.784 13.331 -26.528 29.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.025 3.975 3 H 0.132 0.868 4 O -0.257 6.257 5 C 0.326 3.674 6 O -0.404 6.404 7 C -0.218 4.218 8 C -0.004 4.004 9 C -0.057 4.057 10 C -0.124 4.124 11 C -0.112 4.112 12 C -0.171 4.171 13 C 0.049 3.951 14 F -0.134 7.134 15 C -0.139 4.139 16 C 0.286 3.714 17 O -0.455 6.455 18 N -0.333 5.333 19 C -0.079 4.079 20 C 0.140 3.860 21 C -0.583 4.583 22 H 0.073 0.927 23 C -0.191 4.191 24 N -0.568 5.568 25 Si 0.793 3.207 26 H -0.204 1.204 27 H -0.202 1.202 28 H -0.184 1.184 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.187 0.813 33 H 0.217 0.783 34 H 0.179 0.821 35 H 0.182 0.818 36 H 0.166 0.834 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.017 0.983 42 H 0.049 0.951 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.562 13.073 -26.332 29.510 hybrid contribution -0.792 -0.738 1.312 1.701 sum -3.354 12.335 -25.020 28.096 Atomic orbital electron populations 1.22295 0.90488 1.04041 1.05188 1.22014 0.97099 0.96935 0.81458 0.86796 1.86335 1.77038 1.42192 1.20116 1.22290 0.74250 0.85634 0.85198 1.90913 1.48710 1.16329 1.84414 1.22549 1.07438 1.02790 0.89025 1.22994 0.90356 0.89764 0.97285 1.19035 0.92555 0.95323 0.98778 1.21667 1.01201 0.91444 0.98096 1.21297 0.93010 0.98958 0.97891 1.21509 0.96555 0.97954 1.01042 1.17828 0.79019 0.95750 1.02521 1.91460 1.35410 1.96873 1.89649 1.21143 0.95762 0.96503 1.00507 1.20711 0.79421 0.86155 0.85129 1.90656 1.47455 1.20875 1.86537 1.48076 1.56173 1.21474 1.07590 1.22270 0.98265 0.82776 1.04633 1.18846 0.93119 0.92386 0.81696 1.21646 0.98068 1.28121 1.10451 0.92705 1.25864 0.97790 0.97863 0.97585 1.70038 1.20708 1.43062 1.22966 0.85456 0.79006 0.78712 0.77575 1.20358 1.20240 1.18374 0.88197 0.89431 0.91587 0.81324 0.78349 0.82138 0.81801 0.83418 0.86630 0.90996 0.88609 0.90316 0.98319 0.95080 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.56 9.15 71.98 0.66 -3.90 16 2 C 0.08 2.85 2.12 29.85 0.06 2.92 16 3 H 0.11 3.53 6.65 -2.39 -0.02 3.52 16 4 O -0.34 -11.61 9.34 -51.86 -0.48 -12.09 16 5 C 0.48 13.08 7.12 69.90 0.50 13.58 16 6 O -0.51 -14.91 12.11 19.44 0.24 -14.67 16 7 C -0.20 -3.58 10.02 23.58 0.24 -3.35 16 8 C 0.01 0.16 9.76 23.85 0.23 0.40 16 9 C -0.06 -0.93 4.20 -20.16 -0.08 -1.02 16 10 C -0.11 -1.32 9.79 22.58 0.22 -1.10 16 11 C -0.09 -1.14 10.03 22.22 0.22 -0.91 16 12 C -0.15 -2.48 10.02 22.39 0.22 -2.25 16 13 C 0.07 1.47 7.29 22.33 0.16 1.64 16 14 F -0.16 -3.81 17.26 44.97 0.78 -3.04 16 15 C -0.12 -2.55 7.03 22.62 0.16 -2.39 16 16 C 0.50 22.46 6.99 87.66 0.61 23.08 16 17 O -0.58 -31.97 16.19 15.62 0.25 -31.71 16 18 N -0.60 -26.60 2.86 -851.14 -2.43 -29.03 16 19 C 0.06 1.95 9.87 127.77 1.26 3.21 16 20 C 0.26 14.33 5.14 85.63 0.44 14.77 16 21 C -0.54 -31.79 9.39 25.60 0.24 -31.55 16 22 H 0.05 3.16 7.81 -2.91 -0.02 3.13 16 23 C 0.01 0.47 5.46 84.65 0.46 0.93 16 24 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 25 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 26 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 27 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 28 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 29 H 0.10 2.54 5.51 -2.39 -0.01 2.53 16 30 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.20 0.50 8.06 -2.91 -0.02 0.48 16 34 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 35 H 0.16 0.91 8.06 -2.91 -0.02 0.88 16 36 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.12 2.59 7.68 -2.91 -0.02 2.57 16 38 H 0.07 1.92 8.14 -2.38 -0.02 1.91 16 39 H 0.10 2.42 4.21 -2.38 -0.01 2.41 16 40 H 0.08 2.49 8.09 -2.39 -0.02 2.47 16 41 H 0.00 -0.08 7.49 -2.39 -0.02 -0.10 16 42 H 0.03 1.71 8.07 -2.39 -0.02 1.69 16 43 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -82.28 373.81 7.30 -74.98 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 1.03 Total: 10.50 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 5.61 Total: 14.05 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -2.15 Total: -85.29 kcal Atomic # 8 Polarization: -58.48 SS G_CDS: 0.00 Total: -58.48 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.78 Total: -3.04 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -82.28 7.30 -74.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728921610.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.701 kcal (2) G-P(sol) polarization free energy of solvation -82.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds