Wall clock time and date at job start Tue Mar 31 2020 18:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46492 * 119.99691 * 2 1 4 4 C 1.34774 * 120.00074 * 180.02562 * 2 1 3 5 5 O 1.21588 * 119.99655 * 359.97438 * 4 2 1 6 6 N 1.34769 * 119.99795 * 180.02562 * 4 2 1 7 7 C 1.39980 * 119.99865 * 184.91190 * 6 4 2 8 8 C 1.39003 * 119.99556 * 139.56231 * 7 6 4 9 9 C 1.38230 * 120.23394 * 180.02562 * 8 7 6 10 10 C 1.38002 * 120.23370 * 359.69691 * 9 8 7 11 11 C 1.39652 * 119.98043 * 0.57894 * 10 9 8 12 12 C 1.47744 * 120.11712 * 179.72229 * 11 10 9 13 13 O 1.21593 * 120.00028 * 210.39823 * 12 11 10 14 14 N 1.34777 * 119.99510 * 30.39524 * 12 11 10 15 15 C 1.36883 * 119.99628 * 185.57585 * 14 12 11 16 16 H 1.07999 * 119.99461 * 9.24341 * 15 14 12 17 17 C 1.39048 * 119.99703 * 189.24355 * 15 14 12 18 18 N 1.31359 * 119.99994 * 323.84389 * 17 15 14 19 19 Si 1.86801 * 119.99564 * 143.84580 * 17 15 14 20 20 H 1.48504 * 109.47030 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.46873 * 119.99914 * 19 17 15 22 22 H 1.48501 * 109.47047 * 239.99791 * 19 17 15 23 23 C 1.46497 * 120.00684 * 5.57152 * 14 12 11 24 24 C 1.50697 * 109.47482 * 251.25833 * 23 14 12 25 25 O 1.20824 * 119.99832 * 359.97438 * 24 23 14 26 26 O 1.34228 * 119.99960 * 179.97438 * 24 23 14 27 27 C 1.38572 * 119.99346 * 319.58162 * 7 6 4 28 28 H 1.08998 * 109.47142 * 269.99977 * 1 2 3 29 29 H 1.09000 * 109.47346 * 29.99924 * 1 2 3 30 30 H 1.09004 * 109.46939 * 150.00182 * 1 2 3 31 31 H 1.08999 * 109.47559 * 239.99789 * 3 2 1 32 32 H 1.08997 * 109.47955 * 0.02562 * 3 2 1 33 33 H 1.08997 * 109.47363 * 119.99872 * 3 2 1 34 34 H 0.96998 * 120.00346 * 4.90798 * 6 4 2 35 35 H 1.07994 * 119.88265 * 359.97438 * 8 7 6 36 36 H 1.08000 * 119.88448 * 180.02562 * 9 8 7 37 37 H 1.07995 * 120.01388 * 180.29835 * 10 9 8 38 38 H 0.97002 * 119.99718 * 179.97438 * 18 17 15 39 39 H 1.09000 * 109.46790 * 131.24966 * 23 14 12 40 40 H 1.09002 * 109.46335 * 11.25528 * 23 14 12 41 41 H 0.96694 * 116.99843 * 179.97438 * 26 24 23 42 42 H 1.07993 * 120.11279 * 0.02908 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1390 -1.1672 -0.0005 5 8 1.5310 -2.2201 -0.0005 6 7 3.4866 -1.1671 0.0000 7 6 4.1866 -2.3748 -0.1043 8 6 5.3279 -2.4506 -0.8942 9 6 6.0226 -3.6408 -1.0012 10 6 5.5915 -4.7607 -0.3196 11 6 4.4428 -4.6967 0.4720 12 6 3.9752 -5.8954 1.1982 13 8 2.7887 -6.0515 1.4132 14 7 4.8639 -6.8157 1.6221 15 6 4.4241 -7.9796 2.1928 16 1 3.3736 -8.2291 2.1695 17 6 5.3300 -8.8405 2.8025 18 7 6.5329 -8.9933 2.2974 19 14 4.8361 -9.7797 4.3398 20 1 3.4386 -9.4335 4.7039 21 1 4.9340 -11.2388 4.0813 22 1 5.7434 -9.4130 5.4568 23 6 6.3004 -6.5706 1.4721 24 6 6.8552 -7.4748 0.4018 25 8 6.1256 -8.2452 -0.1762 26 8 8.1599 -7.4241 0.0904 27 6 3.7414 -3.4948 0.5795 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 2.8242 1.3265 -0.8899 32 1 1.4892 2.0972 0.0005 33 1 2.8241 1.3265 0.8900 34 1 3.9716 -0.3302 0.0726 35 1 5.6726 -1.5766 -1.4269 36 1 6.9089 -3.6932 -1.6162 37 1 6.1397 -5.6875 -0.4019 38 1 7.1649 -9.5936 2.7229 39 1 6.8042 -6.7742 2.4170 40 1 6.4639 -5.5306 1.1898 41 1 8.4695 -8.0235 -0.6023 42 1 2.8545 -3.4380 1.1930 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737349667.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:21 Heat of formation + Delta-G solvation = -67.448704 kcal Electronic energy + Delta-G solvation = -29443.218541 eV Core-core repulsion = 25198.006917 eV Total energy + Delta-G solvation = -4245.211624 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.73360 -39.80732 -38.56902 -37.55565 -35.67514 -35.22268 -34.70762 -34.32597 -32.03560 -30.58679 -29.70402 -28.18672 -27.62979 -26.01174 -25.34162 -22.89166 -22.34329 -21.01125 -20.09016 -19.68853 -18.22189 -17.40915 -17.03618 -16.88566 -16.37500 -16.09720 -15.80847 -15.50146 -15.14655 -14.65681 -14.50432 -14.22078 -14.14430 -13.97333 -13.62780 -13.31015 -13.13064 -13.00897 -12.83388 -12.75830 -12.39188 -12.17479 -11.89695 -11.84546 -11.75746 -11.21708 -11.15569 -10.82379 -10.47086 -10.35614 -10.22144 -10.17075 -9.85540 -9.38723 -8.93152 -8.91846 -8.67957 -8.41465 -8.08042 -7.91413 -6.66119 -3.77848 1.32965 1.65672 2.43403 3.04062 3.12992 3.24601 3.35623 3.53734 3.64489 3.70259 4.00103 4.21555 4.35813 4.63950 4.67724 4.92017 5.01673 5.05213 5.14883 5.22508 5.26644 5.38175 5.47947 5.56467 5.64178 5.76499 5.81906 5.88037 6.10417 6.24438 6.43203 6.47658 6.53581 6.60129 6.68389 6.77420 6.89160 7.27263 7.45340 7.64331 7.69728 7.96820 8.33835 8.45904 9.04597 9.15617 9.29078 9.84044 10.43932 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016913 B = 0.003384 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.151181 B = 8271.164800 C = 9512.083428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.638 5.638 3 C 0.076 3.924 4 C 0.699 3.301 5 O -0.557 6.557 6 N -0.685 5.685 7 C 0.146 3.854 8 C -0.140 4.140 9 C -0.107 4.107 10 C -0.123 4.123 11 C -0.080 4.080 12 C 0.479 3.521 13 O -0.567 6.567 14 N -0.417 5.417 15 C -0.301 4.301 16 H 0.115 0.885 17 C 0.041 3.959 18 N -0.853 5.853 19 Si 0.917 3.083 20 H -0.263 1.263 21 H -0.283 1.283 22 H -0.278 1.278 23 C 0.121 3.879 24 C 0.498 3.502 25 O -0.497 6.497 26 O -0.538 6.538 27 C -0.068 4.068 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.403 0.597 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.274 0.726 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.391 0.609 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.355 20.411 -4.607 21.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.377 5.377 3 C -0.067 4.067 4 C 0.400 3.600 5 O -0.431 6.431 6 N -0.334 5.334 7 C 0.053 3.947 8 C -0.161 4.161 9 C -0.125 4.125 10 C -0.142 4.142 11 C -0.084 4.084 12 C 0.269 3.731 13 O -0.451 6.451 14 N -0.135 5.135 15 C -0.428 4.428 16 H 0.132 0.868 17 C -0.164 4.164 18 N -0.492 5.492 19 Si 0.742 3.258 20 H -0.187 1.187 21 H -0.209 1.209 22 H -0.203 1.203 23 C -0.004 4.004 24 C 0.338 3.662 25 O -0.381 6.381 26 O -0.349 6.349 27 C -0.089 4.089 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.239 0.761 35 H 0.140 0.860 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.085 0.915 39 H 0.127 0.873 40 H 0.116 0.884 41 H 0.247 0.753 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.038 19.498 -4.298 19.993 hybrid contribution 0.635 -0.555 0.179 0.862 sum 1.673 18.944 -4.119 19.459 Atomic orbital electron populations 1.21575 0.77392 1.03148 1.01901 1.46908 1.07217 1.04624 1.78961 1.21768 0.97650 0.85861 1.01436 1.15921 0.81630 0.84147 0.78287 1.91062 1.67147 1.29379 1.55517 1.42534 1.04803 1.08491 1.77556 1.17306 0.93693 0.85780 0.97951 1.20865 0.96918 0.98716 0.99565 1.20803 1.00072 0.92104 0.99570 1.21743 0.96081 0.99244 0.97181 1.20179 0.94845 0.94713 0.98667 1.17707 0.86179 0.84204 0.84962 1.90654 1.15648 1.78657 1.60184 1.43543 1.02611 1.16412 1.50891 1.19674 0.95876 0.97299 1.29915 0.86756 1.25194 0.94955 0.97264 0.98938 1.69672 1.08220 1.35719 1.35567 0.86034 0.79711 0.78340 0.81688 1.18728 1.20882 1.20324 1.21453 0.84243 0.96544 0.98191 1.23150 0.78859 0.82824 0.81410 1.90615 1.59606 1.36549 1.51352 1.84501 1.29399 1.63113 1.57896 1.21222 0.99586 0.90447 0.97695 0.92826 0.91316 0.90201 0.92237 0.89974 0.92236 0.76066 0.86003 0.85426 0.85349 0.91457 0.87302 0.88374 0.75296 0.83968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.92 10.41 59.85 0.62 1.54 16 2 N -0.64 -6.56 3.27 -195.34 -0.64 -7.20 16 3 C 0.08 0.42 9.48 59.84 0.57 0.98 16 4 C 0.70 10.25 8.10 -86.93 -0.70 9.55 16 5 O -0.56 -11.13 13.70 5.29 0.07 -11.06 16 6 N -0.68 -8.57 5.23 -14.26 -0.07 -8.65 16 7 C 0.15 2.29 6.20 -83.73 -0.52 1.77 16 8 C -0.14 -1.84 9.96 -39.30 -0.39 -2.23 16 9 C -0.11 -1.53 10.02 -39.67 -0.40 -1.93 16 10 C -0.12 -2.27 7.38 -39.14 -0.29 -2.56 16 11 C -0.08 -1.73 5.39 -104.99 -0.57 -2.29 16 12 C 0.48 12.67 7.37 -12.38 -0.09 12.58 16 13 O -0.57 -17.05 16.35 5.28 0.09 -16.96 16 14 N -0.42 -10.97 2.39 -117.21 -0.28 -11.25 16 15 C -0.30 -8.56 8.57 -15.00 -0.13 -8.69 16 16 H 0.11 3.48 7.43 -52.49 -0.39 3.09 16 17 C 0.04 1.09 4.94 -17.45 -0.09 1.00 16 18 N -0.85 -22.07 8.34 55.50 0.46 -21.61 16 19 Si 0.92 20.64 29.67 -169.99 -5.04 15.60 16 20 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 C 0.12 2.73 4.80 -5.20 -0.02 2.70 16 24 C 0.50 11.30 3.91 36.00 0.14 11.44 16 25 O -0.50 -13.33 15.80 -18.75 -0.30 -13.63 16 26 O -0.54 -9.80 13.42 -39.25 -0.53 -10.33 16 27 C -0.07 -1.37 8.22 -38.96 -0.32 -1.69 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.39 7.92 -51.93 -0.41 -0.02 16 30 H 0.08 0.89 7.42 -51.93 -0.39 0.51 16 31 H 0.06 0.26 8.03 -51.93 -0.42 -0.15 16 32 H 0.08 0.28 7.79 -51.93 -0.40 -0.12 16 33 H 0.06 0.27 7.89 -51.93 -0.41 -0.14 16 34 H 0.40 3.35 7.19 -40.82 -0.29 3.06 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 36 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.13 2.49 3.87 -52.49 -0.20 2.29 16 38 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 39 H 0.11 2.48 6.87 -51.93 -0.36 2.13 16 40 H 0.10 1.90 4.40 -51.93 -0.23 1.67 16 41 H 0.39 5.56 9.10 45.56 0.41 5.97 16 42 H 0.14 3.21 6.49 -52.49 -0.34 2.87 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -38.61 351.21 -6.96 -45.57 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -3.83 Total: 12.05 kcal Atomic # 6 Polarization: 24.36 SS G_CDS: -2.19 Total: 22.18 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -0.53 Total: -48.71 kcal Atomic # 8 Polarization: -51.31 SS G_CDS: -0.66 Total: -51.98 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.04 Total: 15.60 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -38.61 -6.96 -45.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737349667.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.876 kcal (2) G-P(sol) polarization free energy of solvation -38.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds