Wall clock time and date at job start Tue Mar 31 2020 18:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46492 * 119.99691 * 2 1 4 4 C 1.34774 * 120.00074 * 180.02562 * 2 1 3 5 5 O 1.21588 * 119.99655 * 359.97438 * 4 2 1 6 6 N 1.34769 * 119.99795 * 180.02562 * 4 2 1 7 7 C 1.39980 * 119.99865 * 184.91190 * 6 4 2 8 8 C 1.39003 * 119.99556 * 139.56231 * 7 6 4 9 9 C 1.38230 * 120.23394 * 180.02562 * 8 7 6 10 10 C 1.38002 * 120.23370 * 359.69691 * 9 8 7 11 11 C 1.39652 * 119.98043 * 0.57894 * 10 9 8 12 12 C 1.47744 * 120.11712 * 179.72229 * 11 10 9 13 13 O 1.21593 * 120.00028 * 210.39823 * 12 11 10 14 14 N 1.34777 * 119.99510 * 30.39524 * 12 11 10 15 15 C 1.36883 * 119.99628 * 185.57585 * 14 12 11 16 16 H 1.07999 * 119.99461 * 9.24341 * 15 14 12 17 17 C 1.39048 * 119.99703 * 189.24355 * 15 14 12 18 18 N 1.31359 * 119.99994 * 323.84389 * 17 15 14 19 19 Si 1.86801 * 119.99564 * 143.84580 * 17 15 14 20 20 H 1.48504 * 109.47030 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.46873 * 119.99914 * 19 17 15 22 22 H 1.48501 * 109.47047 * 239.99791 * 19 17 15 23 23 C 1.46497 * 120.00684 * 5.57152 * 14 12 11 24 24 C 1.50697 * 109.47482 * 251.25833 * 23 14 12 25 25 O 1.20824 * 119.99832 * 359.97438 * 24 23 14 26 26 O 1.34228 * 119.99960 * 179.97438 * 24 23 14 27 27 C 1.38572 * 119.99346 * 319.58162 * 7 6 4 28 28 H 1.08998 * 109.47142 * 269.99977 * 1 2 3 29 29 H 1.09000 * 109.47346 * 29.99924 * 1 2 3 30 30 H 1.09004 * 109.46939 * 150.00182 * 1 2 3 31 31 H 1.08999 * 109.47559 * 239.99789 * 3 2 1 32 32 H 1.08997 * 109.47955 * 0.02562 * 3 2 1 33 33 H 1.08997 * 109.47363 * 119.99872 * 3 2 1 34 34 H 0.96998 * 120.00346 * 4.90798 * 6 4 2 35 35 H 1.07994 * 119.88265 * 359.97438 * 8 7 6 36 36 H 1.08000 * 119.88448 * 180.02562 * 9 8 7 37 37 H 1.07995 * 120.01388 * 180.29835 * 10 9 8 38 38 H 0.97002 * 119.99718 * 179.97438 * 18 17 15 39 39 H 1.09000 * 109.46790 * 131.24966 * 23 14 12 40 40 H 1.09002 * 109.46335 * 11.25528 * 23 14 12 41 41 H 0.96694 * 116.99843 * 179.97438 * 26 24 23 42 42 H 1.07993 * 120.11279 * 0.02908 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1390 -1.1672 -0.0005 5 8 1.5310 -2.2201 -0.0005 6 7 3.4866 -1.1671 0.0000 7 6 4.1866 -2.3748 -0.1043 8 6 5.3279 -2.4506 -0.8942 9 6 6.0226 -3.6408 -1.0012 10 6 5.5915 -4.7607 -0.3196 11 6 4.4428 -4.6967 0.4720 12 6 3.9752 -5.8954 1.1982 13 8 2.7887 -6.0515 1.4132 14 7 4.8639 -6.8157 1.6221 15 6 4.4241 -7.9796 2.1928 16 1 3.3736 -8.2291 2.1695 17 6 5.3300 -8.8405 2.8025 18 7 6.5329 -8.9933 2.2974 19 14 4.8361 -9.7797 4.3398 20 1 3.4386 -9.4335 4.7039 21 1 4.9340 -11.2388 4.0813 22 1 5.7434 -9.4130 5.4568 23 6 6.3004 -6.5706 1.4721 24 6 6.8552 -7.4748 0.4018 25 8 6.1256 -8.2452 -0.1762 26 8 8.1599 -7.4241 0.0904 27 6 3.7414 -3.4948 0.5795 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 2.8242 1.3265 -0.8899 32 1 1.4892 2.0972 0.0005 33 1 2.8241 1.3265 0.8900 34 1 3.9716 -0.3302 0.0726 35 1 5.6726 -1.5766 -1.4269 36 1 6.9089 -3.6932 -1.6162 37 1 6.1397 -5.6875 -0.4019 38 1 7.1649 -9.5936 2.7229 39 1 6.8042 -6.7742 2.4170 40 1 6.4639 -5.5306 1.1898 41 1 8.4695 -8.0235 -0.6023 42 1 2.8545 -3.4380 1.1930 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737349667.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:20 Heat of formation + Delta-G solvation = -97.925647 kcal Electronic energy + Delta-G solvation = -29444.540120 eV Core-core repulsion = 25198.006917 eV Total energy + Delta-G solvation = -4246.533203 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.99898 -41.41806 -40.18882 -39.15222 -37.09807 -36.64099 -36.24872 -35.94715 -33.99794 -32.02775 -31.03013 -29.51787 -28.72322 -27.31247 -26.84199 -24.47203 -23.58416 -22.77533 -21.34004 -21.17640 -19.36785 -19.07414 -18.78738 -18.49070 -17.84514 -17.35436 -17.19549 -17.05517 -16.62934 -16.34040 -16.05563 -15.78191 -15.66657 -15.14168 -15.05649 -14.72757 -14.52438 -14.28489 -13.97719 -13.70993 -13.60829 -13.51057 -13.45231 -13.35396 -12.97020 -12.84509 -12.58676 -12.46220 -12.28361 -12.18028 -12.03745 -11.49581 -11.34141 -11.13317 -10.91377 -10.62738 -10.10448 -9.88204 -9.79906 -9.15008 -8.68553 -5.90498 -0.05986 0.31407 1.28337 1.37006 1.48720 1.53580 1.75054 1.83958 2.02536 2.19169 2.47264 2.72816 2.77148 2.92646 3.15835 3.70417 3.96660 4.07905 4.17224 4.20978 4.29186 4.37549 4.47650 4.49703 4.53167 4.66130 4.74581 4.85341 4.90221 4.92646 4.95538 5.21014 5.28863 5.37272 5.41001 5.44863 5.50251 5.81440 5.90015 5.99747 6.05196 6.30737 6.78948 6.98931 7.19225 7.41980 7.53381 7.84299 8.40630 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016913 B = 0.003384 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.151181 B = 8271.164800 C = 9512.083428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.631 5.631 3 C 0.066 3.934 4 C 0.687 3.313 5 O -0.623 6.623 6 N -0.666 5.666 7 C 0.153 3.847 8 C -0.106 4.106 9 C -0.087 4.087 10 C -0.133 4.133 11 C -0.110 4.110 12 C 0.461 3.539 13 O -0.629 6.629 14 N -0.424 5.424 15 C -0.354 4.354 16 H 0.072 0.928 17 C 0.020 3.980 18 N -0.856 5.856 19 Si 0.982 3.018 20 H -0.281 1.281 21 H -0.274 1.274 22 H -0.253 1.253 23 C 0.121 3.879 24 C 0.510 3.490 25 O -0.545 6.545 26 O -0.517 6.517 27 C -0.091 4.091 28 H 0.053 0.947 29 H 0.111 0.889 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.428 0.572 35 H 0.182 0.818 36 H 0.177 0.823 37 H 0.117 0.883 38 H 0.284 0.716 39 H 0.104 0.896 40 H 0.132 0.868 41 H 0.413 0.587 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.939 24.027 -5.890 25.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.368 5.368 3 C -0.075 4.075 4 C 0.388 3.612 5 O -0.502 6.502 6 N -0.318 5.318 7 C 0.058 3.942 8 C -0.126 4.126 9 C -0.105 4.105 10 C -0.152 4.152 11 C -0.114 4.114 12 C 0.254 3.746 13 O -0.518 6.518 14 N -0.140 5.140 15 C -0.481 4.481 16 H 0.090 0.910 17 C -0.185 4.185 18 N -0.493 5.493 19 Si 0.804 3.196 20 H -0.206 1.206 21 H -0.199 1.199 22 H -0.177 1.177 23 C -0.003 4.003 24 C 0.352 3.648 25 O -0.433 6.433 26 O -0.329 6.329 27 C -0.112 4.112 28 H 0.072 0.928 29 H 0.129 0.871 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.127 0.873 33 H 0.090 0.910 34 H 0.269 0.731 35 H 0.199 0.801 36 H 0.195 0.805 37 H 0.135 0.865 38 H 0.095 0.905 39 H 0.122 0.878 40 H 0.149 0.851 41 H 0.273 0.727 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.738 23.206 -5.593 24.336 hybrid contribution -0.422 -1.519 0.479 1.648 sum 4.315 21.687 -5.113 22.695 Atomic orbital electron populations 1.21708 0.76973 1.03635 1.02135 1.47064 1.07745 1.04940 1.77089 1.22153 0.98476 0.83927 1.02948 1.16311 0.82191 0.84541 0.78121 1.91042 1.68536 1.32274 1.58365 1.42289 1.04162 1.08489 1.76824 1.17412 0.94359 0.85389 0.97046 1.21445 0.94181 1.00183 0.96826 1.21319 1.00833 0.90484 0.97831 1.21681 0.95036 1.00616 0.97879 1.19820 0.97501 0.93193 1.00889 1.18656 0.85645 0.85652 0.84693 1.90574 1.18239 1.80315 1.62689 1.43585 1.04266 1.15653 1.50525 1.19397 0.94707 0.99618 1.34357 0.90988 1.25885 0.94971 0.97460 1.00171 1.69682 1.08505 1.35520 1.35555 0.85115 0.78784 0.77296 0.78366 1.20578 1.19933 1.17748 1.21557 0.82009 0.98572 0.98195 1.22965 0.79621 0.81643 0.80533 1.90609 1.61120 1.38523 1.53092 1.84413 1.26606 1.63424 1.58490 1.20985 0.98786 0.92173 0.99297 0.92808 0.87100 0.93331 0.90307 0.87312 0.90998 0.73114 0.80062 0.80537 0.86517 0.90486 0.87769 0.85128 0.72732 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.70 10.41 127.77 1.33 3.03 16 2 N -0.63 -11.98 3.27 -890.20 -2.91 -14.90 16 3 C 0.07 0.45 9.48 127.77 1.21 1.67 16 4 C 0.69 20.12 8.10 179.06 1.45 21.57 16 5 O -0.62 -26.72 13.70 -3.99 -0.05 -26.78 16 6 N -0.67 -15.21 5.23 -317.28 -1.66 -16.87 16 7 C 0.15 4.51 6.20 38.10 0.24 4.75 16 8 C -0.11 -2.22 9.96 22.45 0.22 -2.00 16 9 C -0.09 -2.07 10.02 22.21 0.22 -1.85 16 10 C -0.13 -4.77 7.38 22.56 0.17 -4.61 16 11 C -0.11 -5.03 5.39 -20.10 -0.11 -5.14 16 12 C 0.46 26.71 7.37 86.76 0.64 27.35 16 13 O -0.63 -42.38 16.35 -4.01 -0.07 -42.44 16 14 N -0.42 -23.91 2.39 -642.99 -1.54 -25.45 16 15 C -0.35 -21.73 8.57 84.10 0.72 -21.01 16 16 H 0.07 4.89 7.43 -2.91 -0.02 4.87 16 17 C 0.02 1.11 4.94 84.96 0.42 1.53 16 18 N -0.86 -44.50 8.34 21.68 0.18 -44.32 16 19 Si 0.98 43.63 29.67 68.60 2.04 45.67 16 20 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 23 C 0.12 5.57 4.80 85.63 0.41 5.98 16 24 C 0.51 23.15 3.91 71.24 0.28 23.43 16 25 O -0.54 -29.99 15.80 21.97 0.35 -29.64 16 26 O -0.52 -17.67 13.42 -51.39 -0.69 -18.36 16 27 C -0.09 -3.83 8.22 22.67 0.19 -3.65 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 29 H 0.11 0.96 7.92 -2.39 -0.02 0.94 16 30 H 0.05 1.16 7.42 -2.38 -0.02 1.14 16 31 H 0.08 0.30 8.03 -2.39 -0.02 0.28 16 32 H 0.11 0.23 7.79 -2.39 -0.02 0.21 16 33 H 0.07 0.36 7.89 -2.39 -0.02 0.34 16 34 H 0.43 5.26 7.19 -92.71 -0.67 4.59 16 35 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 37 H 0.12 4.47 3.87 -2.91 -0.01 4.45 16 38 H 0.28 13.57 8.31 -92.71 -0.77 12.80 16 39 H 0.10 4.82 6.87 -2.39 -0.02 4.80 16 40 H 0.13 5.07 4.40 -2.39 -0.01 5.06 16 41 H 0.41 10.62 9.10 -74.06 -0.67 9.94 16 42 H 0.10 5.05 6.49 -2.91 -0.02 5.03 16 Total: -1.00 -98.15 351.21 2.81 -95.34 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: -0.23 Total: 26.70 kcal Atomic # 6 Polarization: 43.66 SS G_CDS: 7.39 Total: 51.05 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -5.93 Total: -101.53 kcal Atomic # 8 Polarization: -116.76 SS G_CDS: -0.46 Total: -117.23 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.04 Total: 45.67 kcal Total: -98.15 2.81 -95.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737349667.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.584 kcal (2) G-P(sol) polarization free energy of solvation -98.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds