Wall clock time and date at job start Tue Mar 31 2020 18:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99499 * 2 1 4 4 C 1.34776 * 120.00263 * 180.02562 * 2 1 3 5 5 O 1.21589 * 119.99986 * 5.24156 * 4 2 1 6 6 N 1.34778 * 119.99679 * 185.24462 * 4 2 1 7 7 C 1.39975 * 119.99536 * 184.79636 * 6 4 2 8 8 C 1.38998 * 119.99627 * 144.88730 * 7 6 4 9 9 C 1.38224 * 120.23330 * 180.02562 * 8 7 6 10 10 C 1.38005 * 120.22722 * 359.97438 * 9 8 7 11 11 C 1.39621 * 119.99470 * 0.02562 * 10 9 8 12 12 C 1.47738 * 120.11939 * 180.02562 * 11 10 9 13 13 O 1.21469 * 120.00164 * 179.97438 * 12 11 10 14 14 O 1.34710 * 119.99894 * 359.97438 * 12 11 10 15 15 C 1.45208 * 116.99639 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.46626 * 180.02562 * 15 14 12 17 17 O 1.21292 * 120.00325 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99894 * 180.02562 * 16 15 14 19 19 C 1.37096 * 120.00067 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00351 * 0.02562 * 19 18 16 21 21 C 1.38957 * 120.00075 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99817 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00024 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47230 * 89.99843 * 23 21 19 25 25 H 1.48500 * 109.46669 * 209.99886 * 23 21 19 26 26 H 1.48495 * 109.47066 * 329.99427 * 23 21 19 27 27 C 1.38578 * 119.99842 * 324.90819 * 7 6 4 28 28 H 1.09006 * 109.46424 * 269.99357 * 1 2 3 29 29 H 1.08992 * 109.47439 * 29.99488 * 1 2 3 30 30 H 1.09000 * 109.46999 * 149.99714 * 1 2 3 31 31 H 1.09008 * 109.47170 * 175.02367 * 3 2 1 32 32 H 1.08999 * 109.47472 * 295.02129 * 3 2 1 33 33 H 1.08996 * 109.47207 * 55.02925 * 3 2 1 34 34 H 0.96991 * 120.00203 * 4.79615 * 6 4 2 35 35 H 1.08000 * 119.87947 * 359.97438 * 8 7 6 36 36 H 1.07995 * 119.88428 * 179.97438 * 9 8 7 37 37 H 1.08003 * 120.00501 * 179.97438 * 10 9 8 38 38 H 1.08993 * 109.47468 * 300.00239 * 15 14 12 39 39 H 1.08997 * 109.46651 * 60.01028 * 15 14 12 40 40 H 0.97004 * 120.00211 * 0.02562 * 18 16 15 41 41 H 0.96993 * 120.00070 * 180.02562 * 22 21 19 42 42 H 1.08000 * 120.11430 * 359.72533 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1390 -1.1672 -0.0005 5 8 1.5349 -2.2179 -0.0972 6 7 3.4825 -1.1695 0.1062 7 6 4.1904 -2.3728 0.0049 8 6 5.4424 -2.3938 -0.5987 9 6 6.1455 -3.5794 -0.7018 10 6 5.6095 -4.7504 -0.2057 11 6 4.3527 -4.7402 0.4024 12 6 3.7766 -5.9921 0.9349 13 8 2.6833 -5.9806 1.4639 14 8 4.4639 -7.1462 0.8337 15 6 3.8368 -8.3368 1.3793 16 6 4.7463 -9.5212 1.1769 17 8 5.8178 -9.3761 0.6273 18 7 4.3691 -10.7417 1.6065 19 6 5.1967 -11.8191 1.4228 20 1 6.1512 -11.6898 0.9342 21 6 4.8076 -13.0776 1.8652 22 7 3.6465 -13.2348 2.4602 23 14 5.9356 -14.5454 1.6156 24 1 6.8347 -14.6841 2.7892 25 1 5.1195 -15.7774 1.4689 26 1 6.7491 -14.3418 0.3901 27 6 3.6429 -3.5431 0.5059 28 1 -0.3632 -0.0001 1.0278 29 1 -0.3634 0.8899 -0.5137 30 1 -0.3633 -0.8900 -0.5139 31 1 3.2658 1.0716 0.0891 32 1 2.0027 1.8008 -0.9312 33 1 1.8690 1.8779 0.8421 34 1 3.9588 -0.3375 0.2531 35 1 5.8668 -1.4807 -0.9891 36 1 7.1176 -3.5894 -1.1722 37 1 6.1619 -5.6748 -0.2886 38 1 3.6556 -8.1963 2.4449 39 1 2.8896 -8.5144 0.8699 40 1 3.5120 -10.8579 2.0457 41 1 3.3750 -14.1132 2.7694 42 1 2.6721 -3.5280 0.9789 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000740365891.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:24 Heat of formation + Delta-G solvation = -97.565572 kcal Electronic energy + Delta-G solvation = -27406.548132 eV Core-core repulsion = 23160.030542 eV Total energy + Delta-G solvation = -4246.517589 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17950 -40.21958 -38.81498 -37.97845 -36.02211 -35.95879 -35.17398 -33.95121 -31.49897 -31.30030 -30.17665 -28.47682 -28.21887 -26.34004 -24.96826 -23.96539 -22.84035 -20.97190 -20.43871 -19.51604 -18.88761 -18.10136 -18.01727 -16.85583 -16.67419 -16.40228 -16.18439 -16.10325 -15.55665 -15.17822 -14.87179 -14.52226 -14.44975 -14.09253 -13.98641 -13.89775 -13.72739 -13.20201 -13.02650 -12.95814 -12.85146 -12.48126 -12.19573 -12.07702 -11.98352 -11.65328 -11.58464 -11.10157 -10.76780 -10.41047 -10.36288 -10.32071 -10.29406 -10.24214 -9.56400 -9.24134 -9.17461 -8.47159 -8.39225 -8.03951 -6.45791 -3.87692 0.61456 1.16629 2.07478 2.53500 2.73081 2.83342 3.16446 3.26077 3.29446 3.33059 3.71286 3.79493 4.14980 4.39026 4.57403 4.68894 4.74007 4.76784 4.84715 5.00135 5.08108 5.13744 5.15400 5.19649 5.23149 5.28023 5.43683 5.58473 5.72380 5.77487 5.80391 6.00425 6.08630 6.14681 6.20804 6.31691 6.36142 6.68624 6.74341 7.32723 7.51711 7.92418 8.02767 8.06783 8.53207 9.11217 9.44066 9.94070 10.71521 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027572 B = 0.001938 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.273347 B =14443.834945 C =15353.180373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.635 5.635 3 C 0.079 3.921 4 C 0.701 3.299 5 O -0.561 6.561 6 N -0.685 5.685 7 C 0.142 3.858 8 C -0.114 4.114 9 C -0.114 4.114 10 C -0.072 4.072 11 C -0.101 4.101 12 C 0.504 3.496 13 O -0.505 6.505 14 O -0.321 6.321 15 C 0.061 3.939 16 C 0.440 3.560 17 O -0.576 6.576 18 N -0.553 5.553 19 C -0.302 4.302 20 H 0.106 0.894 21 C 0.024 3.976 22 N -0.897 5.897 23 Si 0.934 3.066 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.268 1.268 27 C -0.057 4.057 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.406 0.594 35 H 0.129 0.871 36 H 0.137 0.863 37 H 0.148 0.852 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.395 0.605 41 H 0.273 0.727 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.807 31.301 -4.420 31.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.374 5.374 3 C -0.064 4.064 4 C 0.403 3.597 5 O -0.436 6.436 6 N -0.336 5.336 7 C 0.048 3.952 8 C -0.135 4.135 9 C -0.132 4.132 10 C -0.090 4.090 11 C -0.102 4.102 12 C 0.348 3.652 13 O -0.395 6.395 14 O -0.235 6.235 15 C -0.017 4.017 16 C 0.225 3.775 17 O -0.460 6.460 18 N -0.191 5.191 19 C -0.431 4.431 20 H 0.124 0.876 21 C -0.178 4.178 22 N -0.538 5.538 23 Si 0.761 3.239 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.193 1.193 27 C -0.077 4.077 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.245 0.755 35 H 0.147 0.853 36 H 0.155 0.845 37 H 0.165 0.835 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.229 0.771 41 H 0.083 0.917 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.020 30.476 -4.632 30.892 hybrid contribution -0.006 -0.293 0.367 0.470 sum -2.026 30.182 -4.265 30.550 Atomic orbital electron populations 1.21573 0.77098 1.03484 1.02071 1.46901 1.07452 1.04541 1.78469 1.21781 0.96351 0.85677 1.02625 1.15871 0.81441 0.84299 0.78095 1.91010 1.67240 1.29639 1.55738 1.42696 1.05623 1.09106 1.76170 1.17231 0.92582 0.85482 0.99918 1.21094 0.94370 0.99274 0.98736 1.20949 1.00407 0.91435 1.00415 1.21677 0.93688 0.99671 0.94002 1.18997 0.96207 0.90831 1.04201 1.21153 0.83150 0.84351 0.76580 1.90833 1.20663 1.86874 1.41089 1.86578 1.47756 1.15891 1.73305 1.22765 0.96562 0.82602 0.99735 1.19309 0.88396 0.83685 0.86107 1.90550 1.23968 1.84576 1.46927 1.41702 1.19968 1.05553 1.51841 1.19726 1.01551 0.85153 1.36648 0.87611 1.25317 0.96880 0.99119 0.96518 1.69616 1.20140 1.25048 1.38978 0.85792 0.79356 0.79755 0.79001 1.20299 1.20847 1.19300 1.21390 1.00620 0.89689 0.96023 0.92645 0.91063 0.89991 0.91209 0.91674 0.91374 0.75490 0.85269 0.84530 0.83458 0.89444 0.89415 0.77131 0.91660 0.82681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 10.52 59.85 0.63 1.26 16 2 N -0.64 -4.61 3.27 -195.34 -0.64 -5.25 16 3 C 0.08 0.23 10.67 59.85 0.64 0.87 16 4 C 0.70 7.65 8.12 -86.92 -0.71 6.95 16 5 O -0.56 -8.76 13.32 5.29 0.07 -8.69 16 6 N -0.69 -5.86 5.23 -14.25 -0.07 -5.94 16 7 C 0.14 1.56 6.30 -83.73 -0.53 1.03 16 8 C -0.11 -0.98 9.96 -39.30 -0.39 -1.38 16 9 C -0.11 -1.09 10.02 -39.67 -0.40 -1.49 16 10 C -0.07 -0.92 9.61 -39.15 -0.38 -1.30 16 11 C -0.10 -1.55 5.87 -105.01 -0.62 -2.16 16 12 C 0.50 9.31 7.90 34.61 0.27 9.58 16 13 O -0.51 -10.27 16.13 -19.24 -0.31 -10.58 16 14 O -0.32 -6.43 9.00 -47.20 -0.42 -6.85 16 15 C 0.06 1.23 5.95 36.00 0.21 1.45 16 16 C 0.44 10.92 7.86 -10.99 -0.09 10.83 16 17 O -0.58 -16.23 16.08 -14.11 -0.23 -16.46 16 18 N -0.55 -14.33 5.29 -10.96 -0.06 -14.39 16 19 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 20 H 0.11 3.08 7.16 -52.48 -0.38 2.71 16 21 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 22 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 23 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 C -0.06 -0.82 8.23 -38.96 -0.32 -1.14 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 30 H 0.08 0.69 7.35 -51.93 -0.38 0.31 16 31 H 0.07 0.10 5.48 -51.92 -0.28 -0.19 16 32 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.07 0.12 8.14 -51.93 -0.42 -0.31 16 34 H 0.41 1.88 6.25 -40.82 -0.26 1.63 16 35 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 37 H 0.15 1.98 7.60 -52.48 -0.40 1.59 16 38 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 39 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 40 H 0.40 9.73 7.90 -40.82 -0.32 9.41 16 41 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.16 2.61 5.81 -52.49 -0.31 2.31 16 LS Contribution 369.20 15.07 5.56 5.56 Total: -1.00 -37.21 369.20 -7.14 -44.35 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -4.84 Total: 9.58 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: -1.91 Total: 16.45 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -0.05 Total: -49.33 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: -0.89 Total: -42.58 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.21 -7.14 -44.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740365891.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.216 kcal (2) G-P(sol) polarization free energy of solvation -37.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds