Wall clock time and date at job start Tue Mar 31 2020 18:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99499 * 2 1 4 4 C 1.34776 * 120.00263 * 180.02562 * 2 1 3 5 5 O 1.21589 * 119.99986 * 5.24156 * 4 2 1 6 6 N 1.34778 * 119.99679 * 185.24462 * 4 2 1 7 7 C 1.39975 * 119.99536 * 184.79636 * 6 4 2 8 8 C 1.38998 * 119.99627 * 144.88730 * 7 6 4 9 9 C 1.38224 * 120.23330 * 180.02562 * 8 7 6 10 10 C 1.38005 * 120.22722 * 359.97438 * 9 8 7 11 11 C 1.39621 * 119.99470 * 0.02562 * 10 9 8 12 12 C 1.47738 * 120.11939 * 180.02562 * 11 10 9 13 13 O 1.21469 * 120.00164 * 179.97438 * 12 11 10 14 14 O 1.34710 * 119.99894 * 359.97438 * 12 11 10 15 15 C 1.45208 * 116.99639 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.46626 * 180.02562 * 15 14 12 17 17 O 1.21292 * 120.00325 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99894 * 180.02562 * 16 15 14 19 19 C 1.37096 * 120.00067 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00351 * 0.02562 * 19 18 16 21 21 C 1.38957 * 120.00075 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99817 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00024 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47230 * 89.99843 * 23 21 19 25 25 H 1.48500 * 109.46669 * 209.99886 * 23 21 19 26 26 H 1.48495 * 109.47066 * 329.99427 * 23 21 19 27 27 C 1.38578 * 119.99842 * 324.90819 * 7 6 4 28 28 H 1.09006 * 109.46424 * 269.99357 * 1 2 3 29 29 H 1.08992 * 109.47439 * 29.99488 * 1 2 3 30 30 H 1.09000 * 109.46999 * 149.99714 * 1 2 3 31 31 H 1.09008 * 109.47170 * 175.02367 * 3 2 1 32 32 H 1.08999 * 109.47472 * 295.02129 * 3 2 1 33 33 H 1.08996 * 109.47207 * 55.02925 * 3 2 1 34 34 H 0.96991 * 120.00203 * 4.79615 * 6 4 2 35 35 H 1.08000 * 119.87947 * 359.97438 * 8 7 6 36 36 H 1.07995 * 119.88428 * 179.97438 * 9 8 7 37 37 H 1.08003 * 120.00501 * 179.97438 * 10 9 8 38 38 H 1.08993 * 109.47468 * 300.00239 * 15 14 12 39 39 H 1.08997 * 109.46651 * 60.01028 * 15 14 12 40 40 H 0.97004 * 120.00211 * 0.02562 * 18 16 15 41 41 H 0.96993 * 120.00070 * 180.02562 * 22 21 19 42 42 H 1.08000 * 120.11430 * 359.72533 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1390 -1.1672 -0.0005 5 8 1.5349 -2.2179 -0.0972 6 7 3.4825 -1.1695 0.1062 7 6 4.1904 -2.3728 0.0049 8 6 5.4424 -2.3938 -0.5987 9 6 6.1455 -3.5794 -0.7018 10 6 5.6095 -4.7504 -0.2057 11 6 4.3527 -4.7402 0.4024 12 6 3.7766 -5.9921 0.9349 13 8 2.6833 -5.9806 1.4639 14 8 4.4639 -7.1462 0.8337 15 6 3.8368 -8.3368 1.3793 16 6 4.7463 -9.5212 1.1769 17 8 5.8178 -9.3761 0.6273 18 7 4.3691 -10.7417 1.6065 19 6 5.1967 -11.8191 1.4228 20 1 6.1512 -11.6898 0.9342 21 6 4.8076 -13.0776 1.8652 22 7 3.6465 -13.2348 2.4602 23 14 5.9356 -14.5454 1.6156 24 1 6.8347 -14.6841 2.7892 25 1 5.1195 -15.7774 1.4689 26 1 6.7491 -14.3418 0.3901 27 6 3.6429 -3.5431 0.5059 28 1 -0.3632 -0.0001 1.0278 29 1 -0.3634 0.8899 -0.5137 30 1 -0.3633 -0.8900 -0.5139 31 1 3.2658 1.0716 0.0891 32 1 2.0027 1.8008 -0.9312 33 1 1.8690 1.8779 0.8421 34 1 3.9588 -0.3375 0.2531 35 1 5.8668 -1.4807 -0.9891 36 1 7.1176 -3.5894 -1.1722 37 1 6.1619 -5.6748 -0.2886 38 1 3.6556 -8.1963 2.4449 39 1 2.8896 -8.5144 0.8699 40 1 3.5120 -10.8579 2.0457 41 1 3.3750 -14.1132 2.7694 42 1 2.6721 -3.5280 0.9789 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740365891.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:23 Heat of formation + Delta-G solvation = -123.730102 kcal Electronic energy + Delta-G solvation = -27407.682711 eV Core-core repulsion = 23160.030542 eV Total energy + Delta-G solvation = -4247.652168 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.07777 -41.56701 -40.17605 -39.55454 -37.54812 -36.69673 -36.06249 -36.01454 -33.43952 -32.45600 -31.06675 -30.00206 -28.78289 -26.97467 -26.74461 -25.33942 -23.68784 -22.20021 -21.47055 -21.19982 -20.09334 -19.82903 -19.01571 -18.20149 -17.83334 -17.77633 -17.41933 -17.12166 -16.91049 -16.48272 -16.12010 -15.80528 -15.72410 -15.66984 -15.12895 -14.82739 -14.71401 -14.47348 -14.16497 -13.78429 -13.65028 -13.56719 -13.41768 -13.39643 -13.01176 -12.94237 -12.85646 -12.63291 -12.48411 -12.11942 -11.94381 -11.84408 -11.61736 -11.58806 -11.20277 -10.54166 -10.13621 -10.10765 -9.86007 -9.20528 -8.53096 -6.04192 -0.42585 0.24387 1.22547 1.33569 1.36016 1.43001 1.48860 1.57626 1.84374 1.93299 2.29072 2.72402 2.77243 2.99664 3.12000 3.55460 3.86342 3.96562 4.05176 4.09916 4.14780 4.16059 4.17894 4.28172 4.38957 4.44567 4.51038 4.74794 4.80201 4.86298 4.93903 5.04081 5.17715 5.26967 5.30997 5.35875 5.37128 5.43313 5.73344 5.86849 5.87219 6.42405 6.54897 6.72376 7.00889 7.33357 7.37302 7.90211 8.64050 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027572 B = 0.001938 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.273347 B =14443.834945 C =15353.180373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.631 5.631 3 C 0.071 3.929 4 C 0.690 3.310 5 O -0.619 6.619 6 N -0.668 5.668 7 C 0.142 3.858 8 C -0.085 4.085 9 C -0.100 4.100 10 C -0.081 4.081 11 C -0.128 4.128 12 C 0.503 3.497 13 O -0.534 6.534 14 O -0.333 6.333 15 C 0.069 3.931 16 C 0.439 3.561 17 O -0.614 6.614 18 N -0.557 5.557 19 C -0.338 4.338 20 H 0.087 0.913 21 C -0.011 4.011 22 N -0.916 5.916 23 Si 1.002 2.998 24 H -0.268 1.268 25 H -0.270 1.270 26 H -0.270 1.270 27 C -0.077 4.077 28 H 0.057 0.943 29 H 0.105 0.895 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.428 0.572 35 H 0.182 0.818 36 H 0.176 0.824 37 H 0.136 0.864 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.399 0.601 41 H 0.281 0.719 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 34.010 -5.259 34.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.368 5.368 3 C -0.070 4.070 4 C 0.392 3.608 5 O -0.498 6.498 6 N -0.321 5.321 7 C 0.047 3.953 8 C -0.105 4.105 9 C -0.118 4.118 10 C -0.100 4.100 11 C -0.130 4.130 12 C 0.349 3.651 13 O -0.426 6.426 14 O -0.248 6.248 15 C -0.008 4.008 16 C 0.226 3.774 17 O -0.501 6.501 18 N -0.194 5.194 19 C -0.467 4.467 20 H 0.105 0.895 21 C -0.211 4.211 22 N -0.556 5.556 23 Si 0.824 3.176 24 H -0.193 1.193 25 H -0.194 1.194 26 H -0.194 1.194 27 C -0.097 4.097 28 H 0.075 0.925 29 H 0.123 0.877 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.271 0.729 35 H 0.199 0.801 36 H 0.193 0.807 37 H 0.154 0.846 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.234 0.766 41 H 0.091 0.909 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.395 33.271 -5.451 33.717 hybrid contribution -0.543 -0.970 0.610 1.268 sum -0.938 32.301 -4.841 32.675 Atomic orbital electron populations 1.21663 0.76919 1.03693 1.02305 1.47063 1.07860 1.04948 1.76911 1.22109 0.96919 0.83706 1.04301 1.16217 0.82053 0.84566 0.78011 1.90985 1.68496 1.32089 1.58276 1.42492 1.04914 1.09227 1.75468 1.17379 0.93489 0.85099 0.99341 1.21594 0.92362 1.00824 0.95727 1.21383 1.01550 0.90162 0.98719 1.21706 0.92722 1.00954 0.94601 1.18914 0.97821 0.89429 1.06840 1.21831 0.82778 0.84610 0.75868 1.90800 1.21903 1.87136 1.42738 1.86579 1.48303 1.16262 1.73611 1.22572 0.95637 0.81446 1.01145 1.19942 0.88327 0.84400 0.84763 1.90511 1.25807 1.85313 1.48423 1.41738 1.19964 1.05756 1.51964 1.19758 1.01760 0.86625 1.38589 0.89545 1.26192 0.98308 1.01231 0.95401 1.69682 1.21116 1.26167 1.38626 0.84805 0.77541 0.76283 0.78957 1.19346 1.19441 1.19427 1.21211 0.99754 0.91113 0.97663 0.92463 0.87669 0.92878 0.89505 0.89963 0.89709 0.72909 0.80093 0.80682 0.84638 0.87610 0.87873 0.76614 0.90944 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.17 10.52 127.77 1.34 2.51 16 2 N -0.63 -8.25 3.27 -890.18 -2.91 -11.16 16 3 C 0.07 0.16 10.67 127.77 1.36 1.53 16 4 C 0.69 14.84 8.12 179.05 1.45 16.30 16 5 O -0.62 -20.55 13.32 -4.00 -0.05 -20.61 16 6 N -0.67 -10.08 5.23 -317.27 -1.66 -11.74 16 7 C 0.14 2.89 6.30 38.10 0.24 3.13 16 8 C -0.08 -1.10 9.96 22.45 0.22 -0.88 16 9 C -0.10 -1.58 10.02 22.21 0.22 -1.36 16 10 C -0.08 -2.07 9.61 22.55 0.22 -1.85 16 11 C -0.13 -4.13 5.87 -20.11 -0.12 -4.24 16 12 C 0.50 19.77 7.90 70.33 0.56 20.32 16 13 O -0.53 -23.26 16.13 19.94 0.32 -22.93 16 14 O -0.33 -13.98 9.00 -49.82 -0.45 -14.43 16 15 C 0.07 2.91 5.95 71.23 0.42 3.34 16 16 C 0.44 22.58 7.86 87.66 0.69 23.27 16 17 O -0.61 -35.93 16.08 15.73 0.25 -35.68 16 18 N -0.56 -29.75 5.29 -306.98 -1.62 -31.37 16 19 C -0.34 -19.46 9.68 84.04 0.81 -18.65 16 20 H 0.09 5.23 7.16 -2.91 -0.02 5.20 16 21 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 22 N -0.92 -49.88 13.05 21.67 0.28 -49.60 16 23 Si 1.00 42.82 29.55 68.60 2.03 44.84 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 27 C -0.08 -2.31 8.23 22.67 0.19 -2.13 16 28 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.10 0.52 8.07 -2.39 -0.02 0.50 16 30 H 0.05 0.96 7.35 -2.39 -0.02 0.94 16 31 H 0.09 -0.12 5.48 -2.38 -0.01 -0.14 16 32 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 33 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 34 H 0.43 2.35 6.25 -92.71 -0.58 1.77 16 35 H 0.18 0.58 8.06 -2.91 -0.02 0.55 16 36 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.14 3.75 7.60 -2.91 -0.02 3.72 16 38 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 39 H 0.10 4.00 8.14 -2.39 -0.02 3.98 16 40 H 0.40 20.25 7.90 -92.71 -0.73 19.52 16 41 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 42 H 0.12 4.52 5.81 -2.91 -0.02 4.51 16 Total: -1.00 -86.85 369.20 4.05 -82.79 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -0.22 Total: 28.71 kcal Atomic # 6 Polarization: 33.10 SS G_CDS: 8.08 Total: 41.18 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -5.91 Total: -103.87 kcal Atomic # 8 Polarization: -93.73 SS G_CDS: 0.07 Total: -93.65 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -86.85 4.05 -82.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740365891.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.936 kcal (2) G-P(sol) polarization free energy of solvation -86.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds