Wall clock time and date at job start Tue Mar 31 2020 18:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36883 * 126.39112 * 2 1 4 4 C 1.34671 * 106.81463 * 180.12235 * 3 2 1 5 5 N 1.34133 * 108.01899 * 359.57663 * 4 3 2 6 6 C 1.30499 * 109.25509 * 0.27433 * 5 4 3 7 7 C 1.50697 * 125.64768 * 179.97438 * 6 5 4 8 8 O 1.42904 * 109.47191 * 243.31574 * 7 6 5 9 9 C 1.53003 * 109.47144 * 123.31724 * 7 6 5 10 10 C 1.50704 * 109.46962 * 172.13294 * 9 7 6 11 11 O 1.21283 * 119.99915 * 349.29733 * 10 9 7 12 12 N 1.34777 * 119.99734 * 169.29666 * 10 9 7 13 13 C 1.46505 * 119.99902 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47199 * 180.02562 * 13 12 10 15 15 C 1.50704 * 109.47031 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99708 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99594 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00088 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99645 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46917 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46695 * 119.99892 * 19 17 15 22 22 H 1.48499 * 109.47132 * 240.00089 * 19 17 15 23 23 C 1.52998 * 109.47424 * 3.31794 * 7 6 5 24 24 F 1.39902 * 109.47224 * 66.39933 * 23 7 6 25 25 F 1.39902 * 109.47456 * 186.40229 * 23 7 6 26 26 F 1.39902 * 109.46802 * 306.40244 * 23 7 6 27 27 H 1.08999 * 109.47359 * 275.31908 * 1 2 3 28 28 H 1.08995 * 109.47491 * 35.32694 * 1 2 3 29 29 H 1.09009 * 109.46810 * 155.32326 * 1 2 3 30 30 H 1.07999 * 126.59728 * 359.97438 * 3 2 1 31 31 H 1.07996 * 125.99217 * 179.84781 * 4 3 2 32 32 H 0.96697 * 113.99889 * 293.23251 * 8 7 6 33 33 H 1.09002 * 109.47310 * 292.13151 * 9 7 6 34 34 H 1.08995 * 109.47077 * 52.13472 * 9 7 6 35 35 H 0.96994 * 120.00324 * 0.02562 * 12 10 9 36 36 H 1.08997 * 109.47436 * 300.00749 * 13 12 10 37 37 H 1.09003 * 109.46634 * 60.00536 * 13 12 10 38 38 H 1.09004 * 109.47294 * 300.00309 * 14 13 12 39 39 H 1.09003 * 109.46956 * 60.00652 * 14 13 12 40 40 H 0.97000 * 119.99947 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1019 0.0000 4 6 3.5460 0.6507 -0.0028 5 7 3.5096 -0.6902 0.0050 6 6 2.2664 -1.0869 0.0066 7 6 1.8020 -2.5205 0.0141 8 8 1.0801 -2.7937 -1.1885 9 6 0.8905 -2.7550 1.2204 10 6 0.2731 -4.1264 1.1244 11 8 0.3768 -4.7678 0.1003 12 7 -0.3944 -4.6401 2.1766 13 6 -0.9951 -5.9730 2.0831 14 6 -1.6881 -6.3139 3.4039 15 6 -2.3055 -7.6853 3.3079 16 1 -2.2124 -8.2568 2.3962 17 6 -2.9891 -8.2104 4.3840 18 7 -3.1028 -7.5143 5.4939 19 14 -3.7549 -9.9100 4.2648 20 1 -3.4872 -10.4804 2.9200 21 1 -3.1647 -10.7928 5.3028 22 1 -5.2212 -9.8083 4.4768 23 6 3.0147 -3.4491 0.1032 24 9 3.6379 -3.2845 1.3449 25 9 2.5967 -4.7769 -0.0365 26 9 3.9185 -3.1348 -0.9174 27 1 -0.3634 0.0953 1.0232 28 1 -0.3634 0.8384 -0.5942 29 1 -0.3633 -0.9339 -0.4291 30 1 1.9612 2.1346 -0.0004 31 1 4.4368 1.2613 -0.0058 32 1 0.2430 -2.3154 -1.2621 33 1 1.4755 -2.6833 2.1373 34 1 0.1026 -2.0019 1.2323 35 1 -0.4777 -4.1270 2.9955 36 1 -1.7267 -5.9861 1.2753 37 1 -0.2168 -6.7088 1.8804 38 1 -0.9567 -6.3008 4.2120 39 1 -2.4665 -5.5781 3.6062 40 1 -3.5834 -7.8838 6.2511 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752827339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:35 Heat of formation + Delta-G solvation = -188.737841 kcal Electronic energy + Delta-G solvation = -30432.379526 eV Core-core repulsion = 25640.051670 eV Total energy + Delta-G solvation = -4792.327856 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.13223 -48.66093 -48.55688 -43.34387 -40.94620 -38.67513 -36.50159 -35.11468 -34.80847 -33.65751 -31.71074 -30.11798 -28.56794 -27.76059 -26.53460 -24.37526 -22.86410 -22.47326 -21.69456 -21.52508 -19.77063 -19.47454 -18.81407 -18.63527 -18.37987 -17.79976 -17.58566 -16.84767 -16.61052 -16.51840 -16.18486 -15.79668 -15.55159 -15.40301 -15.15500 -15.10584 -14.98195 -14.72737 -14.69682 -14.47155 -14.42090 -14.33144 -14.20161 -13.79267 -13.61640 -13.24468 -13.19243 -12.91745 -12.53156 -12.44897 -12.18762 -12.00018 -11.64774 -11.42782 -11.08715 -10.80365 -10.68847 -10.60086 -9.96787 -9.54879 -8.24022 -6.33621 0.79951 1.27379 1.40646 1.42510 1.54852 1.57594 1.71960 1.94772 2.12344 2.41274 2.50743 2.64703 2.72229 2.80200 3.11161 3.46421 3.54105 3.77589 3.86583 3.92221 4.04674 4.22625 4.32263 4.51034 4.52911 4.53218 4.58791 4.69392 4.89121 5.15054 5.30214 5.50799 5.60860 5.71051 5.80296 5.99023 6.17538 6.18348 6.59620 6.80062 6.94075 7.27032 7.35765 8.87836 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.021483 B = 0.002790 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.073000 B =10032.724530 C =10607.044663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.438 5.438 3 C -0.014 4.014 4 C -0.055 4.055 5 N -0.501 5.501 6 C 0.137 3.863 7 C 0.214 3.786 8 O -0.519 6.519 9 C -0.173 4.173 10 C 0.497 3.503 11 O -0.543 6.543 12 N -0.714 5.714 13 C 0.143 3.857 14 C 0.023 3.977 15 C -0.545 4.545 16 H 0.057 0.943 17 C 0.008 3.992 18 N -0.925 5.925 19 Si 0.962 3.038 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.275 1.275 23 C 0.471 3.529 24 F -0.172 7.172 25 F -0.170 7.170 26 F -0.174 7.174 27 H 0.109 0.891 28 H 0.125 0.875 29 H 0.087 0.913 30 H 0.226 0.774 31 H 0.191 0.809 32 H 0.399 0.601 33 H 0.129 0.871 34 H 0.157 0.843 35 H 0.411 0.589 36 H 0.052 0.948 37 H 0.040 0.960 38 H 0.006 0.994 39 H 0.013 0.987 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.839 23.596 -9.593 26.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.120 5.120 3 C -0.148 4.148 4 C -0.204 4.204 5 N -0.222 5.222 6 C -0.124 4.124 7 C 0.168 3.832 8 O -0.328 6.328 9 C -0.213 4.213 10 C 0.282 3.718 11 O -0.420 6.420 12 N -0.367 5.367 13 C 0.020 3.980 14 C -0.015 4.015 15 C -0.584 4.584 16 H 0.075 0.925 17 C -0.190 4.190 18 N -0.565 5.565 19 Si 0.786 3.214 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.201 1.201 23 C 0.416 3.584 24 F -0.154 7.154 25 F -0.151 7.151 26 F -0.156 7.156 27 H 0.127 0.873 28 H 0.143 0.857 29 H 0.106 0.894 30 H 0.242 0.758 31 H 0.208 0.792 32 H 0.252 0.748 33 H 0.148 0.852 34 H 0.174 0.826 35 H 0.247 0.753 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.025 0.975 39 H 0.032 0.968 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.836 22.172 -10.296 25.672 hybrid contribution -1.134 -0.147 0.692 1.337 sum 6.702 22.025 -9.604 24.945 Atomic orbital electron populations 1.22747 0.73804 1.06451 1.06610 1.45332 1.09022 1.05152 1.52526 1.23496 0.90122 0.93792 1.07421 1.22856 0.98840 0.89737 1.08932 1.70176 1.18949 1.14808 1.18288 1.22552 0.87382 0.90127 1.12357 1.19466 0.89780 0.85308 0.88651 1.86790 1.38373 1.71118 1.36474 1.22651 1.01837 0.97212 0.99631 1.20558 0.79217 0.88269 0.83714 1.90836 1.58937 1.61867 1.30353 1.46045 1.54982 1.19020 1.16612 1.21193 0.95583 0.82213 0.99055 1.19137 0.94792 0.95965 0.91597 1.21505 1.34557 1.02571 0.99742 0.92480 1.25823 0.96596 1.01723 0.94905 1.70049 1.42969 1.39310 1.04189 0.85446 0.78198 0.79339 0.78374 1.19105 1.20429 1.20080 1.19755 0.84323 0.80239 0.74100 1.93176 1.84044 1.95443 1.42720 1.93323 1.89674 1.36717 1.95378 1.93186 1.69839 1.92662 1.59875 0.87275 0.85690 0.89427 0.75799 0.79243 0.74793 0.85244 0.82564 0.75338 0.92995 0.94147 0.97537 0.96818 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.13 9.46 127.77 1.21 1.34 16 2 N -0.44 -5.37 3.15 -537.61 -1.69 -7.06 16 3 C -0.01 -0.15 11.58 83.09 0.96 0.81 16 4 C -0.06 -0.97 11.87 83.52 0.99 0.02 16 5 N -0.50 -12.90 9.52 -188.14 -1.79 -14.69 16 6 C 0.14 2.95 6.30 138.13 0.87 3.82 16 7 C 0.21 5.21 0.36 -11.54 0.00 5.21 16 8 O -0.52 -12.94 10.97 -127.48 -1.40 -14.34 16 9 C -0.17 -3.41 4.68 29.85 0.14 -3.27 16 10 C 0.50 14.69 7.01 87.66 0.61 15.31 16 11 O -0.54 -20.50 12.11 18.46 0.22 -20.27 16 12 N -0.71 -22.32 5.56 -463.04 -2.57 -24.89 16 13 C 0.14 5.88 5.61 86.38 0.48 6.37 16 14 C 0.02 1.10 5.09 29.85 0.15 1.25 16 15 C -0.55 -29.97 9.11 25.60 0.23 -29.74 16 16 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 17 C 0.01 0.46 5.46 84.66 0.46 0.92 16 18 N -0.93 -53.30 13.29 21.45 0.28 -53.01 16 19 Si 0.96 43.22 29.54 68.60 2.03 45.25 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 23 C 0.47 15.12 2.16 71.98 0.16 15.27 16 24 F -0.17 -5.35 16.10 44.97 0.72 -4.63 16 25 F -0.17 -6.41 13.64 44.97 0.61 -5.80 16 26 F -0.17 -6.03 16.02 44.97 0.72 -5.31 16 27 H 0.11 -0.04 7.90 -2.39 -0.02 -0.06 16 28 H 0.12 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.09 0.23 4.77 -2.38 -0.01 0.22 16 30 H 0.23 0.25 8.06 -2.91 -0.02 0.22 16 31 H 0.19 2.41 8.06 -2.91 -0.02 2.38 16 32 H 0.40 5.99 6.57 -74.06 -0.49 5.50 16 33 H 0.13 2.34 7.41 -2.39 -0.02 2.33 16 34 H 0.16 1.63 5.40 -2.39 -0.01 1.61 16 35 H 0.41 10.54 8.47 -92.71 -0.79 9.76 16 36 H 0.05 2.18 8.14 -2.39 -0.02 2.17 16 37 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 39 H 0.01 0.67 8.14 -2.39 -0.02 0.66 16 40 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -81.24 343.29 3.26 -77.98 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -0.15 Total: 9.45 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 6.27 Total: 17.31 kcal Atomic # 7 Polarization: -93.88 SS G_CDS: -5.77 Total: -99.66 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -1.17 Total: -34.61 kcal Atomic # 9 Polarization: -17.79 SS G_CDS: 2.06 Total: -15.73 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -81.24 3.26 -77.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752827339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.755 kcal (2) G-P(sol) polarization free energy of solvation -81.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds