Wall clock time and date at job start Tue Mar 31 2020 18:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09011 * 109.47173 * 2 1 4 4 O 1.45196 * 109.47357 * 119.99552 * 2 1 3 5 5 C 1.34231 * 117.00237 * 270.00342 * 4 2 1 6 6 O 1.20824 * 119.99897 * 359.97438 * 5 4 2 7 7 C 1.50702 * 120.00125 * 179.97438 * 5 4 2 8 8 F 1.39905 * 109.46882 * 84.99822 * 7 5 4 9 9 F 1.39896 * 109.46972 * 325.00055 * 7 5 4 10 10 C 1.52992 * 109.46959 * 204.99882 * 7 5 4 11 11 O 1.42900 * 112.85252 * 48.80443 * 10 7 5 12 12 C 1.53785 * 113.61651 * 277.49427 * 10 7 5 13 13 C 1.53776 * 87.08283 * 220.02206 * 12 10 7 14 14 C 1.53780 * 87.08359 * 25.43078 * 13 12 10 15 15 C 1.50701 * 109.47220 * 240.00230 * 2 1 3 16 16 O 1.21283 * 119.99338 * 256.02742 * 15 2 1 17 17 N 1.34769 * 120.00317 * 76.02519 * 15 2 1 18 18 C 1.46496 * 120.00094 * 5.36184 * 17 15 2 19 19 C 1.46501 * 119.99777 * 185.36841 * 17 15 2 20 20 C 1.50695 * 109.47219 * 89.99951 * 19 17 15 21 21 H 1.07998 * 120.00218 * 359.97438 * 20 19 17 22 22 C 1.37882 * 120.00084 * 180.02562 * 20 19 17 23 23 N 1.31516 * 119.99891 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00144 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47153 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47245 * 119.99597 * 24 22 20 27 27 H 1.48505 * 109.47373 * 239.99621 * 24 22 20 28 28 H 1.09003 * 109.46751 * 66.13712 * 1 2 3 29 29 H 1.08995 * 109.47321 * 186.14105 * 1 2 3 30 30 H 1.08999 * 109.46766 * 306.14284 * 1 2 3 31 31 H 0.96698 * 114.00134 * 309.66392 * 11 10 7 32 32 H 1.09000 * 113.61226 * 334.57458 * 12 10 7 33 33 H 1.09000 * 113.61369 * 105.47375 * 12 10 7 34 34 H 1.09001 * 113.61502 * 270.88479 * 13 12 10 35 35 H 1.09002 * 113.61281 * 139.98494 * 13 12 10 36 36 H 1.08997 * 113.62007 * 220.01414 * 14 13 12 37 37 H 1.09003 * 113.60860 * 89.11360 * 14 13 12 38 38 H 1.09005 * 109.47130 * 84.82950 * 18 17 15 39 39 H 1.09007 * 109.47527 * 204.82439 * 18 17 15 40 40 H 1.08998 * 109.47559 * 324.82693 * 18 17 15 41 41 H 1.09001 * 109.47138 * 209.99728 * 19 17 15 42 42 H 1.08998 * 109.47088 * 329.99609 * 19 17 15 43 43 H 0.96996 * 119.99977 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2172 0.0642 2.2811 6 8 1.9982 1.2520 2.2503 7 6 2.7183 -0.5770 3.5495 8 9 4.1144 -0.6591 3.5104 9 9 2.1787 -1.8623 3.6670 10 6 2.2905 0.2676 4.7513 11 8 0.9041 0.6127 4.7218 12 6 3.2189 1.4623 5.0265 13 6 3.0536 1.1455 6.5222 14 6 2.7545 -0.3032 6.1018 15 6 2.0324 -0.7104 -1.2305 16 8 2.4736 -1.8367 -1.1427 17 7 1.9913 -0.0941 -2.4283 18 6 1.5690 1.3058 -2.5178 19 6 2.3688 -0.8243 -3.6410 20 6 1.1506 -1.4919 -4.2252 21 1 0.1912 -1.3835 -3.7414 22 6 1.2611 -2.2420 -5.3768 23 7 2.4296 -2.3744 -5.9658 24 14 -0.2488 -3.0701 -6.1006 25 1 -1.4317 -2.7689 -5.2549 26 1 -0.4808 -2.5613 -7.4763 27 1 -0.0341 -4.5388 -6.1457 28 1 -0.3633 0.4158 -0.9399 29 1 -0.3634 -1.0217 0.1099 30 1 -0.3633 0.6061 0.8299 31 1 0.6115 0.9940 3.8827 32 1 4.2352 1.3191 4.6595 33 1 2.7935 2.4223 4.7339 34 1 2.2051 1.6501 6.9842 35 1 3.9745 1.2526 7.0955 36 1 1.9544 -0.7685 6.6774 37 1 3.6440 -0.9290 6.0289 38 1 2.4229 1.9558 -2.3269 39 1 1.1774 1.5042 -3.5156 40 1 0.7925 1.4991 -1.7777 41 1 2.7861 -0.1286 -4.3690 42 1 3.1136 -1.5805 -3.3927 43 1 2.5072 -2.9018 -6.7761 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753416226.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:41 Heat of formation + Delta-G solvation = -224.955013 kcal Electronic energy + Delta-G solvation = -30578.479574 eV Core-core repulsion = 25875.748778 eV Total energy + Delta-G solvation = -4702.730796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.66952 -47.64788 -41.26121 -39.90539 -39.02366 -36.93594 -35.22153 -35.00735 -32.94776 -31.88570 -29.66982 -27.87665 -26.34468 -26.21011 -25.36887 -24.19466 -22.66854 -21.39401 -20.31662 -19.21195 -19.17079 -18.49470 -18.11754 -17.25251 -16.63479 -16.49739 -16.39262 -15.94567 -15.56095 -15.47404 -14.82874 -14.75936 -14.56227 -14.38375 -14.05044 -13.91778 -13.74741 -13.61032 -13.18118 -12.99633 -12.87162 -12.73476 -12.51351 -12.32267 -12.16741 -11.90204 -11.84269 -11.66849 -11.44709 -11.35247 -11.31970 -11.05237 -10.92523 -10.72053 -10.65422 -10.35952 -10.23429 -9.70934 -9.06489 -8.50937 -7.82408 -6.11784 -4.17449 1.22225 1.59386 2.95594 3.08370 3.23014 3.24974 3.25592 3.33853 3.37519 3.60640 3.80686 3.97463 4.24480 4.28373 4.37393 4.43578 4.62914 4.81190 4.82958 4.88088 5.18218 5.22997 5.27171 5.36175 5.43677 5.47503 5.50665 5.51600 5.54572 5.75987 5.80372 5.85217 5.98494 6.12567 6.81054 6.89959 6.98962 7.31701 7.39006 7.83665 8.12499 8.17555 8.73321 8.89929 9.47996 10.96454 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.026401 B = 0.002674 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.292742 B =10470.144085 C =10578.217113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.066 3.934 3 H 0.108 0.892 4 O -0.301 6.301 5 C 0.431 3.569 6 O -0.472 6.472 7 C 0.299 3.701 8 F -0.162 7.162 9 F -0.163 7.163 10 C 0.079 3.921 11 O -0.517 6.517 12 C -0.153 4.153 13 C -0.129 4.129 14 C -0.118 4.118 15 C 0.509 3.491 16 O -0.516 6.516 17 N -0.594 5.594 18 C 0.072 3.928 19 C 0.245 3.755 20 C -0.531 4.531 21 H 0.059 0.941 22 C 0.062 3.938 23 N -0.893 5.893 24 Si 0.900 3.100 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.387 0.613 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.048 0.952 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.037 0.963 42 H 0.047 0.953 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.596 10.798 22.431 24.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.008 3.992 3 H 0.126 0.874 4 O -0.214 6.214 5 C 0.270 3.730 6 O -0.360 6.360 7 C 0.261 3.739 8 F -0.143 7.143 9 F -0.144 7.144 10 C 0.036 3.964 11 O -0.325 6.325 12 C -0.191 4.191 13 C -0.166 4.166 14 C -0.156 4.156 15 C 0.293 3.707 16 O -0.391 6.391 17 N -0.328 5.328 18 C -0.072 4.072 19 C 0.126 3.874 20 C -0.570 4.570 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.531 5.531 24 Si 0.727 3.273 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.208 1.208 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.238 0.762 32 H 0.119 0.881 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.123 0.877 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.306 10.187 22.820 24.992 hybrid contribution -0.800 -0.315 -1.411 1.652 sum -1.106 9.872 21.409 23.601 Atomic orbital electron populations 1.22201 0.91339 1.04644 1.04200 1.22973 0.96634 0.97500 0.82133 0.87420 1.86734 1.74665 1.40827 1.19205 1.24091 0.76030 0.86548 0.86327 1.90690 1.46514 1.15115 1.83685 1.21496 0.76825 0.82616 0.92978 1.93115 1.27916 1.96300 1.96940 1.93156 1.85162 1.39478 1.96571 1.23287 0.84913 0.96199 0.92017 1.86539 1.20741 1.83745 1.41473 1.23629 1.00104 0.98089 0.97275 1.22739 1.02790 0.95311 0.95757 1.23101 1.02173 0.98332 0.91956 1.19629 0.80511 0.86895 0.83682 1.90729 1.44931 1.18253 1.85172 1.48083 1.65147 1.11950 1.07585 1.21857 0.98996 0.82586 1.03720 1.19409 0.96805 0.92127 0.79018 1.21442 0.94750 1.31538 1.09230 0.92276 1.24946 0.96316 0.96077 0.96726 1.69938 1.23183 1.40344 1.19657 0.86418 0.82699 0.79417 0.78740 1.19758 1.20894 1.20792 0.88879 0.90185 0.91107 0.76176 0.88099 0.89110 0.89077 0.90172 0.88991 0.87710 0.93321 0.89862 0.92289 0.94476 0.93497 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 9.19 37.16 0.34 -1.85 16 2 C 0.07 1.04 2.14 -27.88 -0.06 0.98 16 3 H 0.11 1.49 6.31 -51.92 -0.33 1.16 16 4 O -0.30 -5.02 9.30 -45.75 -0.43 -5.45 16 5 C 0.43 5.91 6.70 36.01 0.24 6.15 16 6 O -0.47 -6.01 13.66 -23.74 -0.32 -6.34 16 7 C 0.30 3.70 1.80 -27.89 -0.05 3.65 16 8 F -0.16 -2.01 15.48 2.25 0.03 -1.97 16 9 F -0.16 -2.25 16.77 2.25 0.04 -2.21 16 10 C 0.08 0.78 0.84 -89.81 -0.08 0.71 16 11 O -0.52 -5.32 13.37 -48.38 -0.65 -5.97 16 12 C -0.15 -1.25 6.90 -25.92 -0.18 -1.43 16 13 C -0.13 -0.85 8.02 -25.92 -0.21 -1.06 16 14 C -0.12 -0.93 7.26 -25.92 -0.19 -1.12 16 15 C 0.51 10.73 6.95 -10.99 -0.08 10.65 16 16 O -0.52 -13.35 16.13 -13.54 -0.22 -13.57 16 17 N -0.59 -12.30 2.86 -182.96 -0.52 -12.82 16 18 C 0.07 1.08 9.79 59.84 0.59 1.66 16 19 C 0.24 6.28 5.18 -5.20 -0.03 6.25 16 20 C -0.53 -14.67 9.39 -34.44 -0.32 -14.99 16 21 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 24 Si 0.90 21.48 29.54 -169.99 -5.02 16.45 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 H 0.09 1.16 6.33 -51.93 -0.33 0.83 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.39 3.55 6.72 45.56 0.31 3.86 16 32 H 0.10 0.80 7.13 -51.93 -0.37 0.43 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.74 7.88 -51.93 -0.41 0.33 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 1.25 8.03 -51.92 -0.42 0.83 16 40 H 0.06 0.71 4.92 -51.93 -0.26 0.46 16 41 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 42 H 0.05 1.37 7.35 -51.93 -0.38 0.98 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -33.48 367.19 -6.04 -39.52 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.11 Total: 0.98 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -0.12 Total: 11.25 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.21 Total: -38.24 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -1.61 Total: -31.32 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.07 Total: -4.18 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.48 -6.04 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753416226.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.432 kcal (2) G-P(sol) polarization free energy of solvation -33.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds