Wall clock time and date at job start Tue Mar 31 2020 18:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09011 * 109.47173 * 2 1 4 4 O 1.45196 * 109.47357 * 119.99552 * 2 1 3 5 5 C 1.34231 * 117.00237 * 270.00342 * 4 2 1 6 6 O 1.20824 * 119.99897 * 359.97438 * 5 4 2 7 7 C 1.50702 * 120.00125 * 179.97438 * 5 4 2 8 8 F 1.39905 * 109.46882 * 84.99822 * 7 5 4 9 9 F 1.39896 * 109.46972 * 325.00055 * 7 5 4 10 10 C 1.52992 * 109.46959 * 204.99882 * 7 5 4 11 11 O 1.42900 * 112.85252 * 48.80443 * 10 7 5 12 12 C 1.53785 * 113.61651 * 277.49427 * 10 7 5 13 13 C 1.53776 * 87.08283 * 220.02206 * 12 10 7 14 14 C 1.53780 * 87.08359 * 25.43078 * 13 12 10 15 15 C 1.50701 * 109.47220 * 240.00230 * 2 1 3 16 16 O 1.21283 * 119.99338 * 256.02742 * 15 2 1 17 17 N 1.34769 * 120.00317 * 76.02519 * 15 2 1 18 18 C 1.46496 * 120.00094 * 5.36184 * 17 15 2 19 19 C 1.46501 * 119.99777 * 185.36841 * 17 15 2 20 20 C 1.50695 * 109.47219 * 89.99951 * 19 17 15 21 21 H 1.07998 * 120.00218 * 359.97438 * 20 19 17 22 22 C 1.37882 * 120.00084 * 180.02562 * 20 19 17 23 23 N 1.31516 * 119.99891 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00144 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47153 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47245 * 119.99597 * 24 22 20 27 27 H 1.48505 * 109.47373 * 239.99621 * 24 22 20 28 28 H 1.09003 * 109.46751 * 66.13712 * 1 2 3 29 29 H 1.08995 * 109.47321 * 186.14105 * 1 2 3 30 30 H 1.08999 * 109.46766 * 306.14284 * 1 2 3 31 31 H 0.96698 * 114.00134 * 309.66392 * 11 10 7 32 32 H 1.09000 * 113.61226 * 334.57458 * 12 10 7 33 33 H 1.09000 * 113.61369 * 105.47375 * 12 10 7 34 34 H 1.09001 * 113.61502 * 270.88479 * 13 12 10 35 35 H 1.09002 * 113.61281 * 139.98494 * 13 12 10 36 36 H 1.08997 * 113.62007 * 220.01414 * 14 13 12 37 37 H 1.09003 * 113.60860 * 89.11360 * 14 13 12 38 38 H 1.09005 * 109.47130 * 84.82950 * 18 17 15 39 39 H 1.09007 * 109.47527 * 204.82439 * 18 17 15 40 40 H 1.08998 * 109.47559 * 324.82693 * 18 17 15 41 41 H 1.09001 * 109.47138 * 209.99728 * 19 17 15 42 42 H 1.08998 * 109.47088 * 329.99609 * 19 17 15 43 43 H 0.96996 * 119.99977 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2172 0.0642 2.2811 6 8 1.9982 1.2520 2.2503 7 6 2.7183 -0.5770 3.5495 8 9 4.1144 -0.6591 3.5104 9 9 2.1787 -1.8623 3.6670 10 6 2.2905 0.2676 4.7513 11 8 0.9041 0.6127 4.7218 12 6 3.2189 1.4623 5.0265 13 6 3.0536 1.1455 6.5222 14 6 2.7545 -0.3032 6.1018 15 6 2.0324 -0.7104 -1.2305 16 8 2.4736 -1.8367 -1.1427 17 7 1.9913 -0.0941 -2.4283 18 6 1.5690 1.3058 -2.5178 19 6 2.3688 -0.8243 -3.6410 20 6 1.1506 -1.4919 -4.2252 21 1 0.1912 -1.3835 -3.7414 22 6 1.2611 -2.2420 -5.3768 23 7 2.4296 -2.3744 -5.9658 24 14 -0.2488 -3.0701 -6.1006 25 1 -1.4317 -2.7689 -5.2549 26 1 -0.4808 -2.5613 -7.4763 27 1 -0.0341 -4.5388 -6.1457 28 1 -0.3633 0.4158 -0.9399 29 1 -0.3634 -1.0217 0.1099 30 1 -0.3633 0.6061 0.8299 31 1 0.6115 0.9940 3.8827 32 1 4.2352 1.3191 4.6595 33 1 2.7935 2.4223 4.7339 34 1 2.2051 1.6501 6.9842 35 1 3.9745 1.2526 7.0955 36 1 1.9544 -0.7685 6.6774 37 1 3.6440 -0.9290 6.0289 38 1 2.4229 1.9558 -2.3269 39 1 1.1774 1.5042 -3.5156 40 1 0.7925 1.4991 -1.7777 41 1 2.7861 -0.1286 -4.3690 42 1 3.1136 -1.5805 -3.3927 43 1 2.5072 -2.9018 -6.7761 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753416226.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:40 Heat of formation + Delta-G solvation = -246.953924 kcal Electronic energy + Delta-G solvation = -30579.433519 eV Core-core repulsion = 25875.748778 eV Total energy + Delta-G solvation = -4703.684741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.65642 -48.65430 -42.39136 -40.94202 -40.30009 -38.11542 -36.76789 -35.93595 -34.90737 -33.28605 -30.61570 -29.72994 -27.64344 -26.95792 -26.43329 -25.63757 -24.14952 -22.51957 -20.99689 -20.62854 -20.25118 -19.50250 -19.11846 -18.72586 -18.43147 -17.90650 -17.39494 -17.16498 -16.90912 -16.41372 -16.31220 -16.16281 -15.53696 -15.37991 -15.35098 -14.94132 -14.90710 -14.65629 -14.42022 -14.32209 -14.07291 -13.77514 -13.61976 -13.50560 -13.40396 -13.38730 -13.16277 -12.94128 -12.77173 -12.60970 -12.54310 -12.28156 -12.23671 -12.21119 -11.88525 -11.71496 -11.44069 -11.11720 -10.74152 -10.67487 -9.58084 -8.25729 -6.40584 0.14536 0.52333 1.36244 1.38880 1.47561 1.52376 1.93941 2.12422 2.36510 2.48952 2.52620 2.91534 3.04837 3.05228 3.26831 3.49044 3.55581 3.59472 3.68477 3.72217 4.23880 4.26561 4.34764 4.51354 4.60553 4.61294 4.68990 4.70222 4.84061 4.90773 4.92578 4.94942 5.03250 5.04239 5.17286 5.30992 5.47032 5.72607 5.82219 5.99739 6.18829 6.51133 6.68473 7.12585 7.32005 8.82264 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.026401 B = 0.002674 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.292742 B =10470.144085 C =10578.217113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.076 3.924 3 H 0.136 0.864 4 O -0.329 6.329 5 C 0.430 3.570 6 O -0.460 6.460 7 C 0.295 3.705 8 F -0.164 7.164 9 F -0.175 7.175 10 C 0.072 3.928 11 O -0.522 6.522 12 C -0.153 4.153 13 C -0.117 4.117 14 C -0.121 4.121 15 C 0.498 3.502 16 O -0.579 6.579 17 N -0.597 5.597 18 C 0.064 3.936 19 C 0.257 3.743 20 C -0.544 4.544 21 H 0.060 0.940 22 C 0.007 3.993 23 N -0.928 5.928 24 Si 0.969 3.031 25 H -0.263 1.263 26 H -0.269 1.269 27 H -0.284 1.284 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.390 0.610 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.033 0.967 42 H -0.001 1.001 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.158 12.780 23.889 27.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.019 3.981 3 H 0.153 0.847 4 O -0.244 6.244 5 C 0.269 3.731 6 O -0.346 6.346 7 C 0.257 3.743 8 F -0.145 7.145 9 F -0.156 7.156 10 C 0.029 3.971 11 O -0.331 6.331 12 C -0.190 4.190 13 C -0.154 4.154 14 C -0.158 4.158 15 C 0.285 3.715 16 O -0.459 6.459 17 N -0.329 5.329 18 C -0.077 4.077 19 C 0.136 3.864 20 C -0.582 4.582 21 H 0.078 0.922 22 C -0.192 4.192 23 N -0.568 5.568 24 Si 0.793 3.207 25 H -0.187 1.187 26 H -0.194 1.194 27 H -0.210 1.210 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.124 0.876 31 H 0.242 0.758 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.129 0.871 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.051 0.949 42 H 0.017 0.983 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.888 12.246 24.294 27.271 hybrid contribution -0.249 -0.894 -1.845 2.065 sum -2.137 11.352 22.449 25.247 Atomic orbital electron populations 1.22251 0.88940 1.04557 1.06209 1.22884 0.98138 0.97315 0.79787 0.84696 1.86730 1.75424 1.42182 1.20034 1.24358 0.76054 0.86708 0.85975 1.90677 1.45923 1.14483 1.83531 1.21919 0.76652 0.82479 0.93293 1.93105 1.28131 1.96305 1.96966 1.93127 1.85348 1.40520 1.96607 1.23616 0.85060 0.96911 0.91483 1.86538 1.21079 1.83765 1.41695 1.23681 0.99644 0.97250 0.98460 1.22721 1.03894 0.93895 0.94848 1.23227 1.02454 0.99433 0.90692 1.20583 0.79288 0.86437 0.85184 1.90688 1.47675 1.21215 1.86342 1.48061 1.64690 1.13944 1.06243 1.22213 1.01200 0.79318 1.05011 1.18897 0.95270 0.91371 0.80816 1.21721 0.95151 1.31891 1.09446 0.92223 1.25880 0.99438 0.96651 0.97216 1.70058 1.25387 1.41149 1.20213 0.85342 0.78995 0.77841 0.78482 1.18739 1.19394 1.21036 0.87847 0.91786 0.87614 0.75800 0.87964 0.88910 0.88667 0.88206 0.88798 0.87100 0.90679 0.89976 0.88691 0.94945 0.98323 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 9.19 71.98 0.66 -3.23 16 2 C 0.08 2.32 2.14 29.85 0.06 2.38 16 3 H 0.14 3.32 6.31 -2.38 -0.02 3.30 16 4 O -0.33 -10.86 9.30 -45.22 -0.42 -11.28 16 5 C 0.43 11.27 6.70 71.24 0.48 11.75 16 6 O -0.46 -10.60 13.66 26.75 0.37 -10.23 16 7 C 0.29 7.06 1.80 29.85 0.05 7.11 16 8 F -0.16 -3.99 15.48 44.97 0.70 -3.29 16 9 F -0.18 -4.82 16.77 44.97 0.75 -4.07 16 10 C 0.07 1.31 0.84 -10.27 -0.01 1.31 16 11 O -0.52 -9.79 13.37 -136.41 -1.82 -11.62 16 12 C -0.15 -2.15 6.90 31.12 0.21 -1.94 16 13 C -0.12 -1.22 8.02 31.12 0.25 -0.97 16 14 C -0.12 -1.68 7.26 31.12 0.23 -1.45 16 15 C 0.50 21.32 6.95 87.66 0.61 21.93 16 16 O -0.58 -31.55 16.13 15.22 0.25 -31.30 16 17 N -0.60 -24.86 2.86 -851.15 -2.43 -27.29 16 18 C 0.06 1.77 9.79 127.77 1.25 3.02 16 19 C 0.26 13.70 5.18 85.63 0.44 14.14 16 20 C -0.54 -30.60 9.39 25.60 0.24 -30.36 16 21 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 22 C 0.01 0.42 5.46 84.66 0.46 0.88 16 23 N -0.93 -55.71 13.29 21.45 0.28 -55.43 16 24 Si 0.97 44.18 29.54 68.60 2.03 46.20 16 25 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 27 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 28 H 0.10 2.25 6.33 -2.39 -0.02 2.23 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.39 6.37 6.72 -74.06 -0.50 5.87 16 32 H 0.10 1.42 7.13 -2.39 -0.02 1.40 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.11 1.38 7.88 -2.39 -0.02 1.37 16 38 H 0.07 1.71 8.14 -2.38 -0.02 1.70 16 39 H 0.08 2.32 8.03 -2.38 -0.02 2.30 16 40 H 0.09 1.95 4.92 -2.39 -0.01 1.93 16 41 H 0.03 1.73 8.07 -2.39 -0.02 1.71 16 42 H 0.00 -0.09 7.35 -2.39 -0.02 -0.10 16 43 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -76.06 367.19 5.20 -70.86 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.56 Total: 12.87 kcal Atomic # 6 Polarization: 19.63 SS G_CDS: 4.94 Total: 24.57 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -2.15 Total: -82.72 kcal Atomic # 8 Polarization: -62.80 SS G_CDS: -1.63 Total: -64.43 kcal Atomic # 9 Polarization: -8.81 SS G_CDS: 1.45 Total: -7.36 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -76.06 5.20 -70.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753416226.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.094 kcal (2) G-P(sol) polarization free energy of solvation -76.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds