Wall clock time and date at job start Tue Mar 31 2020 18:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47295 * 2 1 4 4 C 1.50701 * 109.46737 * 119.99601 * 2 1 3 5 5 O 1.20830 * 119.99940 * 120.00217 * 4 2 1 6 6 O 1.34229 * 120.00122 * 299.99846 * 4 2 1 7 7 C 1.45200 * 117.00153 * 179.97438 * 6 4 2 8 8 C 1.50699 * 109.47053 * 179.97438 * 7 6 4 9 9 C 1.38637 * 119.75358 * 269.73001 * 8 7 6 10 10 C 1.37612 * 120.25018 * 179.72575 * 9 8 7 11 11 C 1.40717 * 119.74243 * 0.56770 * 10 9 8 12 12 C 1.41398 * 120.24250 * 179.68325 * 11 10 9 13 13 H 1.08002 * 120.00311 * 206.88032 * 12 11 10 14 14 C 1.39943 * 120.00033 * 26.88786 * 12 11 10 15 15 N 1.30830 * 120.00152 * 14.29341 * 14 12 11 16 16 Si 1.86802 * 119.99926 * 194.28796 * 14 12 11 17 17 H 1.48506 * 109.46720 * 90.00274 * 16 14 12 18 18 H 1.48499 * 109.46929 * 209.99981 * 16 14 12 19 19 H 1.48490 * 109.47430 * 330.00183 * 16 14 12 20 20 C 1.40711 * 119.51464 * 359.70635 * 11 10 9 21 21 C 1.37620 * 119.74155 * 0.02562 * 20 11 10 22 22 N 1.46897 * 109.47189 * 239.99513 * 2 1 3 23 23 C 1.46469 * 110.99721 * 172.32107 * 22 2 1 24 24 C 1.53255 * 109.85670 * 197.76637 * 23 22 2 25 25 S 1.81904 * 108.50364 * 297.99316 * 24 23 22 26 26 C 1.81901 * 101.91166 * 51.30848 * 25 24 23 27 27 C 1.46473 * 111.00096 * 298.29437 * 22 2 1 28 28 H 1.08995 * 109.47287 * 307.97810 * 1 2 3 29 29 H 1.08998 * 109.47083 * 67.97848 * 1 2 3 30 30 H 1.08999 * 109.47450 * 187.97284 * 1 2 3 31 31 H 1.08997 * 109.47703 * 300.00803 * 7 6 4 32 32 H 1.09005 * 109.46676 * 60.00499 * 7 6 4 33 33 H 1.08000 * 119.87366 * 359.97438 * 9 8 7 34 34 H 1.08003 * 120.12903 * 180.27915 * 10 9 8 35 35 H 0.96993 * 120.00096 * 180.02562 * 15 14 12 36 36 H 1.08004 * 120.12921 * 179.97438 * 20 11 10 37 37 H 1.08003 * 119.87352 * 179.97438 * 21 20 11 38 38 H 1.08995 * 109.41011 * 77.65092 * 23 22 2 39 39 H 1.09003 * 109.40805 * 317.87950 * 23 22 2 40 40 H 1.08998 * 109.63037 * 178.29101 * 24 23 22 41 41 H 1.09002 * 109.63196 * 57.69839 * 24 23 22 42 42 H 1.08991 * 109.63442 * 68.40134 * 26 25 24 43 43 H 1.09009 * 109.62665 * 188.99049 * 26 25 24 44 44 H 1.08997 * 109.40895 * 282.36009 * 27 22 2 45 45 H 1.09004 * 109.40158 * 42.20184 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2305 5 8 2.7269 -1.6928 1.1198 6 8 1.7079 -0.2517 2.4496 7 6 2.2265 -0.9861 3.5898 8 6 1.7626 -0.3287 4.8640 9 6 2.5369 0.6616 5.4486 10 6 2.1203 1.2727 6.6091 11 6 0.9093 0.8804 7.2088 12 6 0.4744 1.4965 8.4049 13 1 -0.1668 0.9585 9.0873 14 6 0.8749 2.8036 8.7044 15 7 1.4083 3.5536 7.7746 16 14 0.6477 3.4774 10.4318 17 1 1.8591 3.1860 11.2399 18 1 0.4376 4.9460 10.3665 19 1 -0.5339 2.8358 11.0620 20 6 0.1344 -0.1298 6.6096 21 6 0.5679 -0.7232 5.4461 22 7 2.0197 -0.6926 -1.1993 23 6 3.4723 -0.5559 -1.3280 24 6 3.9007 -0.8820 -2.7629 25 16 3.4619 -2.6114 -3.1175 26 6 1.7104 -2.6619 -2.6293 27 6 1.5835 -2.0908 -1.2129 28 1 -0.3633 0.6323 0.8100 29 1 -0.3633 0.3853 -0.9527 30 1 -0.3634 -1.0177 0.1425 31 1 1.8624 -2.0130 3.5568 32 1 3.3161 -0.9858 3.5570 33 1 3.4685 0.9574 4.9894 34 1 2.7228 2.0471 7.0605 35 1 1.6862 4.4594 7.9822 36 1 -0.7966 -0.4389 7.0616 37 1 -0.0250 -1.4991 4.9846 38 1 3.9632 -1.2427 -0.6386 39 1 3.7626 0.4667 -1.0870 40 1 4.9781 -0.7498 -2.8623 41 1 3.3822 -0.2225 -3.4588 42 1 1.1200 -2.0609 -3.3208 43 1 1.3565 -3.6929 -2.6415 44 1 2.2056 -2.6709 -0.5313 45 1 0.5434 -2.1488 -0.8922 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776215332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:07 Heat of formation + Delta-G solvation = -61.682815 kcal Electronic energy + Delta-G solvation = -26210.732673 eV Core-core repulsion = 22512.064292 eV Total energy + Delta-G solvation = -3698.668382 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.83888 -38.43964 -37.53157 -35.91018 -33.91685 -33.06093 -31.83237 -30.79502 -29.42896 -28.53269 -27.30739 -24.91007 -23.85950 -23.28954 -21.78760 -21.13863 -20.22532 -20.10556 -17.68720 -17.42879 -17.34922 -16.32486 -16.06349 -15.76238 -15.42923 -15.31300 -14.56442 -14.39615 -14.20053 -13.93648 -13.73864 -13.41254 -13.16755 -13.07019 -12.69153 -12.56980 -12.48296 -12.17905 -12.07733 -11.99144 -11.76624 -11.73061 -11.45685 -11.22544 -11.03868 -10.89582 -10.86099 -10.60901 -10.46901 -10.20850 -9.92273 -9.76440 -9.50044 -9.31336 -8.68433 -7.87826 -7.61061 -7.47104 -6.87148 -4.51312 1.56501 2.26109 2.30062 2.38499 2.91235 2.95954 3.00938 3.03703 3.29793 3.35551 3.83663 4.46368 4.52344 4.56962 4.71882 4.85508 4.92257 4.94015 5.03443 5.05587 5.19925 5.38613 5.42177 5.54572 5.56761 5.58111 5.59472 5.63660 5.69880 5.84400 5.96648 6.03030 6.18795 6.25578 6.47498 6.64266 6.78783 6.82778 6.94897 7.12767 7.21840 7.47298 7.67969 7.91911 7.93055 7.95442 8.15189 8.50186 8.75144 8.82071 10.06583 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.031585 B = 0.002058 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.295226 B =13604.344025 C =13736.822477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.093 3.907 3 H 0.121 0.879 4 C 0.426 3.574 5 O -0.518 6.518 6 O -0.346 6.346 7 C 0.136 3.864 8 C -0.233 4.233 9 C -0.077 4.077 10 C -0.166 4.166 11 C 0.118 3.882 12 C -0.457 4.457 13 H 0.080 0.920 14 C 0.073 3.927 15 N -0.790 5.790 16 Si 0.912 3.088 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.261 1.261 20 C -0.228 4.228 21 C -0.065 4.065 22 N -0.520 5.520 23 C 0.040 3.960 24 C -0.070 4.070 25 S -0.276 6.276 26 C -0.070 4.070 27 C 0.031 3.969 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.282 0.718 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.084 0.916 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.911 -4.684 -16.911 17.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.018 4.018 3 H 0.139 0.861 4 C 0.268 3.732 5 O -0.409 6.409 6 O -0.261 6.261 7 C 0.063 3.937 8 C -0.235 4.235 9 C -0.096 4.096 10 C -0.185 4.185 11 C 0.115 3.885 12 C -0.486 4.486 13 H 0.098 0.902 14 C -0.145 4.145 15 N -0.415 5.415 16 Si 0.737 3.263 17 H -0.192 1.192 18 H -0.202 1.202 19 H -0.185 1.185 20 C -0.247 4.247 21 C -0.084 4.084 22 N -0.244 5.244 23 C -0.089 4.089 24 C -0.219 4.219 25 S -0.050 6.050 26 C -0.219 4.219 27 C -0.097 4.097 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.138 0.862 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.125 0.875 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.124 0.876 44 H 0.102 0.898 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.647 -5.340 -17.757 18.615 hybrid contribution -0.365 0.909 1.867 2.109 sum 1.281 -4.431 -15.889 16.545 Atomic orbital electron populations 1.21829 0.90819 1.03129 1.04041 1.21654 0.98264 0.98897 0.82950 0.86091 1.25149 0.77796 0.83464 0.86766 1.90580 1.36432 1.26406 1.87433 1.86756 1.68918 1.55872 1.14565 1.21722 0.97273 0.93593 0.81067 1.18676 1.00694 1.06886 0.97212 1.20538 0.97671 0.95112 0.96269 1.21316 0.97398 1.02471 0.97341 1.17701 0.89830 0.89427 0.91494 1.19679 1.26681 0.97922 1.04277 0.90188 1.25966 0.92817 0.96955 0.98774 1.69806 1.29903 1.08388 1.33386 0.86239 0.79922 0.78194 0.81977 1.19189 1.20187 1.18535 1.20997 1.00647 1.04583 0.98475 1.20382 0.94323 0.97943 0.95715 1.61751 1.12811 1.15168 1.34675 1.22420 0.87653 1.02894 0.95896 1.23461 1.04415 0.94697 0.99293 1.86914 1.14719 1.16972 1.86419 1.23483 0.94342 1.04708 0.99361 1.22622 1.02519 0.88589 0.95991 0.89980 0.90250 0.92173 0.92226 0.92177 0.89390 0.86155 0.90665 0.88668 0.89366 0.90940 0.89842 0.87493 0.89120 0.89260 0.87580 0.89791 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.77 37.16 0.33 -1.03 16 2 C 0.09 1.03 2.84 -68.87 -0.20 0.83 16 3 H 0.12 1.20 7.89 -51.93 -0.41 0.79 16 4 C 0.43 6.30 6.69 36.01 0.24 6.54 16 5 O -0.52 -8.49 11.76 -18.75 -0.22 -8.71 16 6 O -0.35 -6.04 10.13 -39.25 -0.40 -6.44 16 7 C 0.14 2.51 5.58 36.00 0.20 2.71 16 8 C -0.23 -5.03 5.54 -104.33 -0.58 -5.60 16 9 C -0.08 -1.77 9.67 -39.66 -0.38 -2.15 16 10 C -0.17 -4.19 8.68 -38.87 -0.34 -4.53 16 11 C 0.12 3.05 5.56 -106.82 -0.59 2.46 16 12 C -0.46 -11.68 9.06 -37.74 -0.34 -12.02 16 13 H 0.08 1.96 7.89 -52.49 -0.41 1.55 16 14 C 0.07 1.77 5.20 -17.34 -0.09 1.68 16 15 N -0.79 -19.75 10.91 55.55 0.61 -19.14 16 16 Si 0.91 18.00 29.58 -169.99 -5.03 12.97 16 17 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 18 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 19 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 20 C -0.23 -5.41 9.80 -38.87 -0.38 -5.80 16 21 C -0.07 -1.43 9.67 -39.66 -0.38 -1.81 16 22 N -0.52 -5.41 4.36 -228.44 -1.00 -6.41 16 23 C 0.04 0.42 4.87 -3.93 -0.02 0.40 16 24 C -0.07 -0.63 6.69 37.29 0.25 -0.38 16 25 S -0.28 -2.96 22.40 -107.50 -2.41 -5.37 16 26 C -0.07 -0.65 6.69 37.28 0.25 -0.40 16 27 C 0.03 0.33 4.49 -3.93 -0.02 0.32 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.58 6.49 -51.93 -0.34 0.24 16 31 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 32 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 33 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.12 3.12 6.21 -52.48 -0.33 2.80 16 35 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 36 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 37 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 38 H 0.07 0.94 6.30 -51.93 -0.33 0.61 16 39 H 0.08 0.76 7.79 -51.93 -0.40 0.36 16 40 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.11 0.85 8.14 -51.92 -0.42 0.43 16 44 H 0.08 1.12 5.69 -51.93 -0.30 0.83 16 45 H 0.09 0.84 5.80 -51.93 -0.30 0.54 16 LS Contribution 371.77 15.07 5.60 5.60 Total: -1.00 -27.64 371.77 -11.49 -39.13 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.59 Total: 7.16 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -2.05 Total: -18.78 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: -0.39 Total: -25.55 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.62 Total: -15.15 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 16 Polarization: -2.96 SS G_CDS: -2.41 Total: -5.37 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.64 -11.49 -39.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776215332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.557 kcal (2) G-P(sol) polarization free energy of solvation -27.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds