Wall clock time and date at job start Tue Mar 31 2020 18:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47295 * 2 1 4 4 C 1.50701 * 109.46737 * 119.99601 * 2 1 3 5 5 O 1.20830 * 119.99940 * 120.00217 * 4 2 1 6 6 O 1.34229 * 120.00122 * 299.99846 * 4 2 1 7 7 C 1.45200 * 117.00153 * 179.97438 * 6 4 2 8 8 C 1.50699 * 109.47053 * 179.97438 * 7 6 4 9 9 C 1.38637 * 119.75358 * 269.73001 * 8 7 6 10 10 C 1.37612 * 120.25018 * 179.72575 * 9 8 7 11 11 C 1.40717 * 119.74243 * 0.56770 * 10 9 8 12 12 C 1.41398 * 120.24250 * 179.68325 * 11 10 9 13 13 H 1.08002 * 120.00311 * 206.88032 * 12 11 10 14 14 C 1.39943 * 120.00033 * 26.88786 * 12 11 10 15 15 N 1.30830 * 120.00152 * 14.29341 * 14 12 11 16 16 Si 1.86802 * 119.99926 * 194.28796 * 14 12 11 17 17 H 1.48506 * 109.46720 * 90.00274 * 16 14 12 18 18 H 1.48499 * 109.46929 * 209.99981 * 16 14 12 19 19 H 1.48490 * 109.47430 * 330.00183 * 16 14 12 20 20 C 1.40711 * 119.51464 * 359.70635 * 11 10 9 21 21 C 1.37620 * 119.74155 * 0.02562 * 20 11 10 22 22 N 1.46897 * 109.47189 * 239.99513 * 2 1 3 23 23 C 1.46469 * 110.99721 * 172.32107 * 22 2 1 24 24 C 1.53255 * 109.85670 * 197.76637 * 23 22 2 25 25 S 1.81904 * 108.50364 * 297.99316 * 24 23 22 26 26 C 1.81901 * 101.91166 * 51.30848 * 25 24 23 27 27 C 1.46473 * 111.00096 * 298.29437 * 22 2 1 28 28 H 1.08995 * 109.47287 * 307.97810 * 1 2 3 29 29 H 1.08998 * 109.47083 * 67.97848 * 1 2 3 30 30 H 1.08999 * 109.47450 * 187.97284 * 1 2 3 31 31 H 1.08997 * 109.47703 * 300.00803 * 7 6 4 32 32 H 1.09005 * 109.46676 * 60.00499 * 7 6 4 33 33 H 1.08000 * 119.87366 * 359.97438 * 9 8 7 34 34 H 1.08003 * 120.12903 * 180.27915 * 10 9 8 35 35 H 0.96993 * 120.00096 * 180.02562 * 15 14 12 36 36 H 1.08004 * 120.12921 * 179.97438 * 20 11 10 37 37 H 1.08003 * 119.87352 * 179.97438 * 21 20 11 38 38 H 1.08995 * 109.41011 * 77.65092 * 23 22 2 39 39 H 1.09003 * 109.40805 * 317.87950 * 23 22 2 40 40 H 1.08998 * 109.63037 * 178.29101 * 24 23 22 41 41 H 1.09002 * 109.63196 * 57.69839 * 24 23 22 42 42 H 1.08991 * 109.63442 * 68.40134 * 26 25 24 43 43 H 1.09009 * 109.62665 * 188.99049 * 26 25 24 44 44 H 1.08997 * 109.40895 * 282.36009 * 27 22 2 45 45 H 1.09004 * 109.40158 * 42.20184 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2305 5 8 2.7269 -1.6928 1.1198 6 8 1.7079 -0.2517 2.4496 7 6 2.2265 -0.9861 3.5898 8 6 1.7626 -0.3287 4.8640 9 6 2.5369 0.6616 5.4486 10 6 2.1203 1.2727 6.6091 11 6 0.9093 0.8804 7.2088 12 6 0.4744 1.4965 8.4049 13 1 -0.1668 0.9585 9.0873 14 6 0.8749 2.8036 8.7044 15 7 1.4083 3.5536 7.7746 16 14 0.6477 3.4774 10.4318 17 1 1.8591 3.1860 11.2399 18 1 0.4376 4.9460 10.3665 19 1 -0.5339 2.8358 11.0620 20 6 0.1344 -0.1298 6.6096 21 6 0.5679 -0.7232 5.4461 22 7 2.0197 -0.6926 -1.1993 23 6 3.4723 -0.5559 -1.3280 24 6 3.9007 -0.8820 -2.7629 25 16 3.4619 -2.6114 -3.1175 26 6 1.7104 -2.6619 -2.6293 27 6 1.5835 -2.0908 -1.2129 28 1 -0.3633 0.6323 0.8100 29 1 -0.3633 0.3853 -0.9527 30 1 -0.3634 -1.0177 0.1425 31 1 1.8624 -2.0130 3.5568 32 1 3.3161 -0.9858 3.5570 33 1 3.4685 0.9574 4.9894 34 1 2.7228 2.0471 7.0605 35 1 1.6862 4.4594 7.9822 36 1 -0.7966 -0.4389 7.0616 37 1 -0.0250 -1.4991 4.9846 38 1 3.9632 -1.2427 -0.6386 39 1 3.7626 0.4667 -1.0870 40 1 4.9781 -0.7498 -2.8623 41 1 3.3822 -0.2225 -3.4588 42 1 1.1200 -2.0609 -3.3208 43 1 1.3565 -3.6929 -2.6415 44 1 2.2056 -2.6709 -0.5313 45 1 0.5434 -2.1488 -0.8922 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776215332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:06 Heat of formation + Delta-G solvation = -74.679205 kcal Electronic energy + Delta-G solvation = -26211.296239 eV Core-core repulsion = 22512.064292 eV Total energy + Delta-G solvation = -3699.231948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.99048 -39.78381 -39.02000 -37.20623 -35.68852 -33.95180 -32.65842 -32.48140 -31.25851 -29.39127 -28.90703 -26.18442 -25.10172 -24.28508 -22.97751 -22.73617 -21.85246 -21.29077 -19.27834 -18.75449 -18.41471 -17.55265 -17.36182 -16.95934 -16.68536 -16.25659 -16.01414 -15.66394 -15.55700 -15.17571 -14.88236 -14.56940 -14.28681 -14.11042 -13.94408 -13.89096 -13.83134 -13.53989 -13.43862 -13.12487 -12.87143 -12.81914 -12.72349 -12.61551 -12.55493 -12.31710 -12.11082 -11.82847 -11.68100 -11.59262 -11.49464 -11.29495 -11.09726 -10.70374 -9.68515 -9.44496 -9.29692 -8.71085 -8.66975 -6.42014 0.71404 0.80886 1.08138 1.09901 1.38224 1.43625 1.51732 1.55143 1.90859 2.19289 2.50334 2.71821 3.56848 3.71473 3.78001 3.79531 3.92832 4.04231 4.06903 4.08572 4.21474 4.23130 4.32250 4.42179 4.44274 4.46993 4.52291 4.62174 4.66498 4.80609 4.84858 4.88711 4.98611 4.99148 5.11271 5.23624 5.28097 5.37499 5.54124 5.60697 5.63593 5.78684 5.86005 6.04435 6.11526 6.30591 6.63144 6.70433 6.87823 6.95197 8.29443 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.031585 B = 0.002058 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.295226 B =13604.344025 C =13736.822477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.097 3.903 3 H 0.138 0.862 4 C 0.425 3.575 5 O -0.534 6.534 6 O -0.358 6.358 7 C 0.142 3.858 8 C -0.226 4.226 9 C -0.082 4.082 10 C -0.189 4.189 11 C 0.087 3.913 12 C -0.493 4.493 13 H 0.079 0.921 14 C 0.033 3.967 15 N -0.823 5.823 16 Si 0.986 3.014 17 H -0.262 1.262 18 H -0.267 1.267 19 H -0.258 1.258 20 C -0.241 4.241 21 C -0.066 4.066 22 N -0.508 5.508 23 C 0.040 3.960 24 C -0.057 4.057 25 S -0.321 6.321 26 C -0.058 4.058 27 C 0.033 3.967 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.290 0.710 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.044 0.956 39 H 0.098 0.902 40 H 0.119 0.881 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.117 0.883 44 H 0.055 0.945 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.283 -4.436 -18.344 18.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.014 4.014 3 H 0.155 0.845 4 C 0.268 3.732 5 O -0.425 6.425 6 O -0.274 6.274 7 C 0.069 3.931 8 C -0.227 4.227 9 C -0.101 4.101 10 C -0.208 4.208 11 C 0.084 3.916 12 C -0.522 4.522 13 H 0.097 0.903 14 C -0.182 4.182 15 N -0.448 5.448 16 Si 0.806 3.194 17 H -0.187 1.187 18 H -0.192 1.192 19 H -0.181 1.181 20 C -0.261 4.261 21 C -0.085 4.085 22 N -0.232 5.232 23 C -0.089 4.089 24 C -0.205 4.205 25 S -0.096 6.096 26 C -0.206 4.206 27 C -0.095 4.095 28 H 0.094 0.906 29 H 0.119 0.881 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.121 0.879 37 H 0.135 0.865 38 H 0.063 0.937 39 H 0.116 0.884 40 H 0.137 0.863 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.135 0.865 44 H 0.073 0.927 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.020 -5.108 -19.219 19.913 hybrid contribution -0.125 0.727 2.128 2.252 sum 0.895 -4.381 -17.091 17.666 Atomic orbital electron populations 1.21823 0.89399 1.03092 1.04998 1.21899 0.99288 0.99168 0.81012 0.84459 1.26030 0.77197 0.83344 0.86581 1.90599 1.37170 1.27313 1.87420 1.86724 1.69336 1.56069 1.15263 1.21492 0.97434 0.93646 0.80480 1.18991 0.99942 1.05551 0.98196 1.20766 0.98520 0.95181 0.95620 1.21282 0.97682 1.03206 0.98662 1.18055 0.90549 0.90602 0.92370 1.19918 1.28237 0.99087 1.04958 0.90272 1.26810 0.92048 0.96686 1.02693 1.69858 1.30676 1.08979 1.35332 0.85145 0.79908 0.77715 0.76618 1.18699 1.19192 1.18123 1.21209 1.01001 1.04597 0.99281 1.20694 0.94646 0.98147 0.94967 1.61865 1.12812 1.14978 1.33524 1.22432 0.87343 1.02995 0.96156 1.23467 1.05354 0.93197 0.98511 1.87094 1.16714 1.19173 1.86580 1.23481 0.93000 1.05616 0.98515 1.22578 1.02428 0.88240 0.96301 0.90630 0.88082 0.92293 0.91246 0.91833 0.87717 0.87773 0.89967 0.87860 0.86466 0.93744 0.88362 0.86320 0.87779 0.87890 0.86524 0.92706 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 8.77 71.98 0.63 -1.61 16 2 C 0.10 1.91 2.84 44.17 0.13 2.04 16 3 H 0.14 2.32 7.89 -2.39 -0.02 2.30 16 4 C 0.43 11.91 6.69 71.24 0.48 12.39 16 5 O -0.53 -17.02 11.76 21.95 0.26 -16.76 16 6 O -0.36 -11.96 10.13 -51.40 -0.52 -12.48 16 7 C 0.14 5.05 5.58 71.24 0.40 5.45 16 8 C -0.23 -9.54 5.54 -19.68 -0.11 -9.65 16 9 C -0.08 -3.79 9.67 22.22 0.21 -3.57 16 10 C -0.19 -9.83 8.68 22.73 0.20 -9.63 16 11 C 0.09 4.61 5.56 -21.29 -0.12 4.50 16 12 C -0.49 -26.01 9.06 23.46 0.21 -25.79 16 13 H 0.08 4.01 7.89 -2.91 -0.02 3.98 16 14 C 0.03 1.62 5.20 85.26 0.44 2.06 16 15 N -0.82 -42.17 10.91 21.83 0.24 -41.93 16 16 Si 0.99 37.17 29.58 68.60 2.03 39.20 16 17 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 18 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 19 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 20 C -0.24 -11.60 9.80 22.73 0.22 -11.38 16 21 C -0.07 -2.84 9.67 22.22 0.21 -2.63 16 22 N -0.51 -9.38 4.36 -876.66 -3.82 -13.21 16 23 C 0.04 0.75 4.87 86.47 0.42 1.17 16 24 C -0.06 -0.91 6.69 72.07 0.48 -0.43 16 25 S -0.32 -6.50 22.40 -56.49 -1.27 -7.77 16 26 C -0.06 -0.95 6.69 72.06 0.48 -0.47 16 27 C 0.03 0.65 4.49 86.47 0.39 1.04 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 0.99 6.49 -2.39 -0.02 0.98 16 31 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 32 H 0.06 2.21 8.07 -2.38 -0.02 2.19 16 33 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 34 H 0.10 5.66 6.21 -2.91 -0.02 5.64 16 35 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 36 H 0.10 4.65 8.06 -2.91 -0.02 4.62 16 37 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 38 H 0.04 1.12 6.30 -2.39 -0.02 1.10 16 39 H 0.10 1.56 7.79 -2.39 -0.02 1.54 16 40 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.12 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.05 1.43 5.69 -2.39 -0.01 1.42 16 45 H 0.10 1.67 5.80 -2.38 -0.01 1.65 16 Total: -1.00 -61.00 371.77 2.59 -58.41 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.99 Total: 31.06 kcal Atomic # 6 Polarization: -41.21 SS G_CDS: 4.68 Total: -36.52 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -3.59 Total: -55.14 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.26 Total: -29.25 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.20 kcal Atomic # 16 Polarization: -6.50 SS G_CDS: -1.27 Total: -7.77 kcal Total: -61.00 2.59 -58.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776215332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.266 kcal (2) G-P(sol) polarization free energy of solvation -60.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds