Wall clock time and date at job start Tue Mar 31 2020 19:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 117.00279 * 2 1 4 4 O 1.20824 * 119.99660 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00227 * 179.97438 * 3 2 1 6 6 F 1.39901 * 110.88828 * 57.42684 * 5 3 2 7 7 C 1.55154 * 111.00524 * 293.54445 * 5 3 2 8 8 C 1.54314 * 102.94564 * 206.38473 * 7 5 3 9 9 N 1.47026 * 107.27139 * 22.19296 * 8 7 5 10 10 C 1.34776 * 125.64666 * 181.01789 * 9 8 7 11 11 O 1.21286 * 119.99537 * 180.02562 * 10 9 8 12 12 C 1.50702 * 120.00575 * 0.02909 * 10 9 8 13 13 C 1.50698 * 109.47372 * 179.97438 * 12 10 9 14 14 C 1.37641 * 120.12522 * 264.72615 * 13 12 10 15 15 C 1.38617 * 120.24295 * 179.69729 * 14 13 12 16 16 C 1.38652 * 120.50027 * 0.60241 * 15 14 13 17 17 C 1.37599 * 120.25198 * 359.67975 * 16 15 14 18 18 C 1.40697 * 120.12633 * 85.00202 * 13 12 10 19 19 C 1.41394 * 120.24447 * 0.02562 * 18 13 12 20 20 H 1.08000 * 120.00082 * 334.05225 * 19 18 13 21 21 C 1.39947 * 119.99452 * 154.04670 * 19 18 13 22 22 N 1.30819 * 120.00350 * 343.66936 * 21 19 18 23 23 Si 1.86802 * 119.99602 * 163.66853 * 21 19 18 24 24 H 1.48503 * 109.47129 * 60.00019 * 23 21 19 25 25 H 1.48503 * 109.46986 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47138 * 300.00000 * 23 21 19 27 27 C 1.47423 * 108.70242 * 1.28936 * 9 8 7 28 28 H 1.09001 * 109.46987 * 59.99948 * 1 2 3 29 29 H 1.08996 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47416 * 300.00029 * 1 2 3 31 31 H 1.09002 * 110.71683 * 88.02387 * 7 5 3 32 32 H 1.09000 * 110.72060 * 324.75488 * 7 5 3 33 33 H 1.08999 * 109.88545 * 262.77679 * 8 7 5 34 34 H 1.09004 * 110.01488 * 141.68636 * 8 7 5 35 35 H 1.08996 * 109.46956 * 300.00095 * 12 10 9 36 36 H 1.09005 * 109.46845 * 59.99507 * 12 10 9 37 37 H 1.08001 * 119.87800 * 359.97438 * 14 13 12 38 38 H 1.07999 * 119.74334 * 180.29824 * 15 14 13 39 39 H 1.08006 * 119.87385 * 179.69426 * 16 15 14 40 40 H 1.07998 * 120.12860 * 180.02562 * 17 16 15 41 41 H 0.97000 * 120.00212 * 180.02562 * 22 21 19 42 42 H 1.09002 * 110.36553 * 94.47815 * 27 9 8 43 43 H 1.08993 * 110.36448 * 216.80407 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 0.0006 6 9 4.1017 0.5979 -1.1005 7 6 4.1515 0.7264 1.3288 8 6 5.4958 1.4744 1.4493 9 7 5.3925 2.6922 0.6319 10 6 6.3670 3.6069 0.4587 11 8 6.1698 4.5780 -0.2407 12 6 7.7017 3.4231 1.1338 13 6 8.6066 4.5751 0.7799 14 6 9.4955 4.4597 -0.2646 15 6 10.3245 5.5200 -0.5962 16 6 10.2776 6.7026 0.1261 17 6 9.4008 6.8382 1.1778 18 6 8.5499 5.7706 1.5196 19 6 7.6452 5.8983 2.5986 20 1 6.7404 5.3089 2.6173 21 6 7.9224 6.7883 3.6425 22 7 9.1332 7.2589 3.7967 23 14 6.5632 7.3042 4.8155 24 1 6.0197 6.1046 5.5016 25 1 7.1112 8.2463 5.8243 26 1 5.4783 7.9724 4.0529 27 6 4.0442 2.7502 0.0385 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 4.3134 -0.3496 1.2636 32 1 3.4985 0.9690 2.1672 33 1 6.3046 0.8457 1.0771 34 1 5.6825 1.7410 2.4896 35 1 7.5609 3.3899 2.2141 36 1 8.1536 2.4900 0.7974 37 1 9.5441 3.5413 -0.8307 38 1 11.0156 5.4224 -1.4204 39 1 10.9316 7.5206 -0.1380 40 1 9.3656 7.7604 1.7388 41 1 9.3253 7.8755 4.5205 42 1 3.3810 3.3503 0.6616 43 1 4.0912 3.1593 -0.9707 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777406148.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:49 Heat of formation + Delta-G solvation = -138.531278 kcal Electronic energy + Delta-G solvation = -28988.216110 eV Core-core repulsion = 24720.002153 eV Total energy + Delta-G solvation = -4268.213957 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -48.26168 -40.95157 -39.58103 -37.74503 -37.05798 -36.47328 -33.60302 -32.13761 -31.35288 -29.56765 -29.41653 -28.34217 -26.82320 -25.13973 -24.11198 -22.88515 -20.94717 -20.84731 -20.13758 -19.02571 -18.41898 -17.55793 -17.21987 -17.03646 -16.55863 -15.77338 -15.63054 -15.40249 -15.23986 -14.84917 -14.58179 -14.36040 -13.99327 -13.60150 -13.54041 -13.33361 -13.12210 -12.71809 -12.65398 -12.58418 -12.47545 -12.20184 -11.75971 -11.71805 -11.54744 -11.38109 -11.27514 -11.15690 -11.04121 -10.96574 -10.74769 -10.67102 -10.39131 -9.46421 -9.37072 -9.26229 -9.13707 -8.50774 -7.29292 -7.27475 -6.71927 -4.32699 1.52302 1.93909 2.79632 2.94518 3.07129 3.10550 3.21821 3.29003 3.30120 3.56473 3.77563 3.94924 3.99565 4.35030 4.65093 4.67888 4.68254 4.77374 4.89581 5.10341 5.19811 5.30502 5.46773 5.59192 5.61272 5.65897 5.78626 5.80895 5.98642 6.07524 6.30421 6.38071 6.43358 6.53770 6.81172 7.10333 7.11172 7.31758 7.44430 7.63552 7.74245 7.95009 8.08686 8.15462 8.33430 8.65624 8.72793 8.93320 9.03511 10.22290 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.003334 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.129691 B = 8396.090678 C = 9743.527102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.347 6.347 3 C 0.460 3.540 4 O -0.478 6.478 5 C 0.117 3.883 6 F -0.168 7.168 7 C -0.143 4.143 8 C 0.102 3.898 9 N -0.632 5.632 10 C 0.535 3.465 11 O -0.511 6.511 12 C -0.062 4.062 13 C -0.185 4.185 14 C -0.080 4.080 15 C -0.239 4.239 16 C -0.106 4.106 17 C -0.159 4.159 18 C 0.130 3.870 19 C -0.457 4.457 20 H 0.073 0.927 21 C 0.078 3.922 22 N -0.795 5.795 23 Si 0.903 3.097 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.264 1.264 27 C 0.105 3.895 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.280 0.720 42 H 0.098 0.902 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.593 -15.797 -1.091 20.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.263 6.263 3 C 0.300 3.700 4 O -0.363 6.363 5 C 0.096 3.904 6 F -0.149 7.149 7 C -0.181 4.181 8 C -0.021 4.021 9 N -0.371 5.371 10 C 0.326 3.674 11 O -0.383 6.383 12 C -0.102 4.102 13 C -0.186 4.186 14 C -0.098 4.098 15 C -0.259 4.259 16 C -0.125 4.125 17 C -0.178 4.178 18 C 0.127 3.873 19 C -0.487 4.487 20 H 0.091 0.909 21 C -0.140 4.140 22 N -0.420 5.420 23 Si 0.727 3.273 24 H -0.191 1.191 25 H -0.203 1.203 26 H -0.189 1.189 27 C -0.018 4.018 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.086 0.914 31 H 0.128 0.872 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.135 0.865 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.679 -14.732 -1.352 19.483 hybrid contribution -0.856 0.171 0.459 0.986 sum -13.535 -14.561 -0.893 19.900 Atomic orbital electron populations 1.23393 0.75489 1.04198 1.02989 1.86541 1.24029 1.32339 1.83387 1.23488 0.90975 0.82203 0.73372 1.90747 1.66171 1.36142 1.43236 1.21757 0.85808 0.95681 0.87106 1.92977 1.86490 1.81136 1.54259 1.23316 0.97534 1.02665 0.94553 1.22023 0.96716 0.86252 0.97145 1.48660 1.12804 1.24614 1.51065 1.21129 0.84849 0.80635 0.80817 1.90713 1.80916 1.28506 1.38154 1.20243 0.90079 0.98516 1.01362 1.19042 1.01908 0.94845 1.02848 1.20309 0.96506 0.96871 0.96143 1.20310 1.05644 0.95918 1.03997 1.20681 0.98847 0.96275 0.96666 1.21293 0.99375 0.99475 0.97687 1.17330 0.90477 0.89160 0.90311 1.19431 1.05770 1.20226 1.03269 0.90884 1.25866 0.95628 0.94316 0.98160 1.69807 1.19440 1.24525 1.28270 0.86462 0.81936 0.79323 0.79566 1.19095 1.20318 1.18866 1.22482 0.85874 0.90904 1.02578 0.91507 0.87593 0.91440 0.87248 0.88123 0.90244 0.89756 0.88414 0.90431 0.89706 0.89626 0.89559 0.86527 0.90900 0.88427 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.35 -3.27 10.56 -39.25 -0.41 -3.68 16 3 C 0.46 5.21 7.05 36.00 0.25 5.46 16 4 O -0.48 -6.48 15.49 -18.75 -0.29 -6.77 16 5 C 0.12 1.33 1.59 -89.50 -0.14 1.18 16 6 F -0.17 -2.11 17.02 2.25 0.04 -2.07 16 7 C -0.14 -1.20 6.22 -24.90 -0.15 -1.35 16 8 C 0.10 1.08 6.48 -3.07 -0.02 1.06 16 9 N -0.63 -9.74 3.32 -170.38 -0.57 -10.31 16 10 C 0.54 10.69 7.48 -10.99 -0.08 10.61 16 11 O -0.51 -12.55 16.29 5.55 0.09 -12.46 16 12 C -0.06 -1.22 4.37 -29.03 -0.13 -1.35 16 13 C -0.18 -4.46 4.43 -103.91 -0.46 -4.92 16 14 C -0.08 -1.86 9.66 -39.66 -0.38 -2.25 16 15 C -0.24 -5.63 10.05 -39.29 -0.39 -6.02 16 16 C -0.11 -2.61 10.02 -39.66 -0.40 -3.01 16 17 C -0.16 -4.28 8.68 -38.87 -0.34 -4.62 16 18 C 0.13 3.48 5.56 -106.83 -0.59 2.89 16 19 C -0.46 -12.04 8.14 -37.74 -0.31 -12.35 16 20 H 0.07 1.87 6.68 -52.49 -0.35 1.52 16 21 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 22 N -0.79 -20.52 10.97 55.55 0.61 -19.91 16 23 Si 0.90 18.91 29.59 -169.99 -5.03 13.88 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 27 C 0.11 1.50 5.83 -2.41 -0.01 1.49 16 28 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 29 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.40 8.13 -51.93 -0.42 -0.02 16 31 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 0.70 8.03 -51.93 -0.42 0.29 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 1.86 7.06 -51.93 -0.37 1.49 16 36 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 37 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 40 H 0.12 3.22 6.22 -52.49 -0.33 2.89 16 41 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 42 H 0.10 1.40 7.44 -51.93 -0.39 1.01 16 43 H 0.10 1.53 8.03 -51.93 -0.42 1.11 16 LS Contribution 368.67 15.07 5.56 5.56 Total: -1.00 -33.00 368.67 -7.81 -40.82 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.62 Total: 5.00 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -2.18 Total: -10.05 kcal Atomic # 7 Polarization: -30.26 SS G_CDS: 0.04 Total: -30.22 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.61 Total: -22.91 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.00 -7.81 -40.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777406148.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.716 kcal (2) G-P(sol) polarization free energy of solvation -33.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds