Wall clock time and date at job start Tue Mar 31 2020 19:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 117.00279 * 2 1 4 4 O 1.20824 * 119.99660 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00227 * 179.97438 * 3 2 1 6 6 F 1.39901 * 110.88828 * 57.42684 * 5 3 2 7 7 C 1.55154 * 111.00524 * 293.54445 * 5 3 2 8 8 C 1.54314 * 102.94564 * 206.38473 * 7 5 3 9 9 N 1.47026 * 107.27139 * 22.19296 * 8 7 5 10 10 C 1.34776 * 125.64666 * 181.01789 * 9 8 7 11 11 O 1.21286 * 119.99537 * 180.02562 * 10 9 8 12 12 C 1.50702 * 120.00575 * 0.02909 * 10 9 8 13 13 C 1.50698 * 109.47372 * 179.97438 * 12 10 9 14 14 C 1.37641 * 120.12522 * 264.72615 * 13 12 10 15 15 C 1.38617 * 120.24295 * 179.69729 * 14 13 12 16 16 C 1.38652 * 120.50027 * 0.60241 * 15 14 13 17 17 C 1.37599 * 120.25198 * 359.67975 * 16 15 14 18 18 C 1.40697 * 120.12633 * 85.00202 * 13 12 10 19 19 C 1.41394 * 120.24447 * 0.02562 * 18 13 12 20 20 H 1.08000 * 120.00082 * 334.05225 * 19 18 13 21 21 C 1.39947 * 119.99452 * 154.04670 * 19 18 13 22 22 N 1.30819 * 120.00350 * 343.66936 * 21 19 18 23 23 Si 1.86802 * 119.99602 * 163.66853 * 21 19 18 24 24 H 1.48503 * 109.47129 * 60.00019 * 23 21 19 25 25 H 1.48503 * 109.46986 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47138 * 300.00000 * 23 21 19 27 27 C 1.47423 * 108.70242 * 1.28936 * 9 8 7 28 28 H 1.09001 * 109.46987 * 59.99948 * 1 2 3 29 29 H 1.08996 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47416 * 300.00029 * 1 2 3 31 31 H 1.09002 * 110.71683 * 88.02387 * 7 5 3 32 32 H 1.09000 * 110.72060 * 324.75488 * 7 5 3 33 33 H 1.08999 * 109.88545 * 262.77679 * 8 7 5 34 34 H 1.09004 * 110.01488 * 141.68636 * 8 7 5 35 35 H 1.08996 * 109.46956 * 300.00095 * 12 10 9 36 36 H 1.09005 * 109.46845 * 59.99507 * 12 10 9 37 37 H 1.08001 * 119.87800 * 359.97438 * 14 13 12 38 38 H 1.07999 * 119.74334 * 180.29824 * 15 14 13 39 39 H 1.08006 * 119.87385 * 179.69426 * 16 15 14 40 40 H 1.07998 * 120.12860 * 180.02562 * 17 16 15 41 41 H 0.97000 * 120.00212 * 180.02562 * 22 21 19 42 42 H 1.09002 * 110.36553 * 94.47815 * 27 9 8 43 43 H 1.08993 * 110.36448 * 216.80407 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 0.0006 6 9 4.1017 0.5979 -1.1005 7 6 4.1515 0.7264 1.3288 8 6 5.4958 1.4744 1.4493 9 7 5.3925 2.6922 0.6319 10 6 6.3670 3.6069 0.4587 11 8 6.1698 4.5780 -0.2407 12 6 7.7017 3.4231 1.1338 13 6 8.6066 4.5751 0.7799 14 6 9.4955 4.4597 -0.2646 15 6 10.3245 5.5200 -0.5962 16 6 10.2776 6.7026 0.1261 17 6 9.4008 6.8382 1.1778 18 6 8.5499 5.7706 1.5196 19 6 7.6452 5.8983 2.5986 20 1 6.7404 5.3089 2.6173 21 6 7.9224 6.7883 3.6425 22 7 9.1332 7.2589 3.7967 23 14 6.5632 7.3042 4.8155 24 1 6.0197 6.1046 5.5016 25 1 7.1112 8.2463 5.8243 26 1 5.4783 7.9724 4.0529 27 6 4.0442 2.7502 0.0385 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 4.3134 -0.3496 1.2636 32 1 3.4985 0.9690 2.1672 33 1 6.3046 0.8457 1.0771 34 1 5.6825 1.7410 2.4896 35 1 7.5609 3.3899 2.2141 36 1 8.1536 2.4900 0.7974 37 1 9.5441 3.5413 -0.8307 38 1 11.0156 5.4224 -1.4204 39 1 10.9316 7.5206 -0.1380 40 1 9.3656 7.7604 1.7388 41 1 9.3253 7.8755 4.5205 42 1 3.3810 3.3503 0.6616 43 1 4.0912 3.1593 -0.9707 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777406148.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:48 Heat of formation + Delta-G solvation = -157.545691 kcal Electronic energy + Delta-G solvation = -28989.040637 eV Core-core repulsion = 24720.002153 eV Total energy + Delta-G solvation = -4269.038484 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.20910 -41.82873 -40.95919 -39.34746 -38.21081 -37.62126 -35.49697 -33.66521 -32.67719 -31.34156 -30.50051 -29.22045 -28.25752 -26.92881 -25.31494 -23.76625 -22.82423 -21.99421 -21.54517 -20.38014 -19.39123 -19.04968 -18.46957 -18.20646 -17.55391 -17.33093 -16.81910 -16.70457 -16.30596 -16.14547 -15.96853 -15.66756 -15.35263 -15.31047 -14.61019 -14.36765 -14.35114 -14.01534 -13.97708 -13.90831 -13.51848 -13.36588 -13.30168 -12.96179 -12.90141 -12.75840 -12.68492 -12.51258 -12.47957 -12.29028 -12.11803 -11.95613 -11.63723 -11.31991 -11.21405 -11.02529 -10.88403 -9.75542 -9.22624 -9.16724 -8.59204 -6.29202 0.65028 0.96241 1.08865 1.18900 1.35741 1.45807 1.54456 1.71797 2.03603 2.19858 2.61642 2.78979 2.89129 3.17436 3.54920 3.70084 3.86109 4.03746 4.10485 4.23254 4.29520 4.33202 4.38034 4.46137 4.51732 4.61611 4.65419 4.68429 4.70423 4.73494 4.81277 4.94773 5.03162 5.05305 5.19503 5.21929 5.37030 5.55163 5.77355 6.03584 6.16239 6.21795 6.29130 6.41128 6.42138 6.73733 6.99283 7.11417 7.23885 8.37256 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.003334 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.129691 B = 8396.090678 C = 9743.527102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.344 6.344 3 C 0.467 3.533 4 O -0.507 6.507 5 C 0.121 3.879 6 F -0.175 7.175 7 C -0.128 4.128 8 C 0.089 3.911 9 N -0.628 5.628 10 C 0.534 3.466 11 O -0.572 6.572 12 C -0.058 4.058 13 C -0.191 4.191 14 C -0.091 4.091 15 C -0.243 4.243 16 C -0.117 4.117 17 C -0.195 4.195 18 C 0.096 3.904 19 C -0.483 4.483 20 H 0.071 0.929 21 C 0.038 3.962 22 N -0.825 5.825 23 Si 0.969 3.031 24 H -0.250 1.250 25 H -0.266 1.266 26 H -0.274 1.274 27 C 0.099 3.901 28 H 0.062 0.938 29 H 0.140 0.860 30 H 0.071 0.929 31 H 0.142 0.858 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.286 0.714 42 H 0.094 0.906 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.590 -18.918 -0.269 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.259 6.259 3 C 0.308 3.692 4 O -0.395 6.395 5 C 0.100 3.900 6 F -0.155 7.155 7 C -0.166 4.166 8 C -0.032 4.032 9 N -0.364 5.364 10 C 0.325 3.675 11 O -0.450 6.450 12 C -0.097 4.097 13 C -0.193 4.193 14 C -0.109 4.109 15 C -0.262 4.262 16 C -0.135 4.135 17 C -0.214 4.214 18 C 0.094 3.906 19 C -0.513 4.513 20 H 0.089 0.911 21 C -0.177 4.177 22 N -0.451 5.451 23 Si 0.790 3.210 24 H -0.173 1.173 25 H -0.191 1.191 26 H -0.199 1.199 27 C -0.024 4.024 28 H 0.081 0.919 29 H 0.158 0.842 30 H 0.089 0.911 31 H 0.160 0.840 32 H 0.137 0.863 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.097 0.903 42 H 0.112 0.888 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.685 -17.938 -0.509 22.568 hybrid contribution -0.568 1.044 0.096 1.193 sum -14.253 -16.894 -0.413 22.107 Atomic orbital electron populations 1.23738 0.73592 1.06461 1.03037 1.86529 1.25791 1.30891 1.82688 1.23376 0.90813 0.82382 0.72677 1.90744 1.66758 1.37213 1.44805 1.21634 0.86221 0.93650 0.88445 1.92966 1.86624 1.80960 1.54944 1.23419 0.96077 1.04080 0.92982 1.22462 0.98918 0.84612 0.97249 1.48538 1.12175 1.25013 1.50651 1.21055 0.85702 0.80532 0.80177 1.90684 1.82094 1.31192 1.41006 1.20231 0.89523 0.98319 1.01629 1.19542 1.02198 0.95345 1.02174 1.20755 0.95928 0.98167 0.96034 1.20725 1.05851 0.95383 1.04276 1.20953 0.98685 0.97638 0.96219 1.21311 1.01541 0.99320 0.99233 1.17736 0.91115 0.90310 0.91433 1.19587 1.05914 1.21711 1.04056 0.91078 1.26643 0.97677 0.93842 0.99517 1.69870 1.21097 1.25036 1.29129 0.85455 0.78530 0.79488 0.77517 1.17342 1.19067 1.19937 1.22471 0.85386 0.93469 1.01123 0.91896 0.84220 0.91067 0.83983 0.86278 0.88212 0.88256 0.87960 0.86701 0.86491 0.86666 0.87683 0.88536 0.90325 0.88843 0.90804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.56 113.37 1.20 1.44 16 2 O -0.34 -5.58 10.56 -51.38 -0.54 -6.13 16 3 C 0.47 9.82 7.05 71.23 0.50 10.32 16 4 O -0.51 -13.51 15.49 21.97 0.34 -13.17 16 5 C 0.12 2.52 1.59 -10.07 -0.02 2.50 16 6 F -0.17 -4.05 17.02 44.97 0.77 -3.28 16 7 C -0.13 -1.67 6.22 31.78 0.20 -1.47 16 8 C 0.09 1.60 6.48 86.72 0.56 2.16 16 9 N -0.63 -18.67 3.32 -811.35 -2.70 -21.37 16 10 C 0.53 21.32 7.48 87.66 0.66 21.97 16 11 O -0.57 -29.09 16.29 -3.05 -0.05 -29.14 16 12 C -0.06 -2.20 4.37 29.10 0.13 -2.07 16 13 C -0.19 -9.25 4.43 -19.41 -0.09 -9.33 16 14 C -0.09 -4.13 9.66 22.22 0.21 -3.92 16 15 C -0.24 -11.24 10.05 22.46 0.23 -11.01 16 16 C -0.12 -5.84 10.02 22.22 0.22 -5.61 16 17 C -0.19 -10.92 8.68 22.73 0.20 -10.72 16 18 C 0.10 5.33 5.56 -21.29 -0.12 5.22 16 19 C -0.48 -26.21 8.14 23.46 0.19 -26.02 16 20 H 0.07 3.74 6.68 -2.91 -0.02 3.72 16 21 C 0.04 1.94 5.16 85.26 0.44 2.38 16 22 N -0.83 -43.91 10.97 21.83 0.24 -43.67 16 23 Si 0.97 39.20 29.59 68.60 2.03 41.23 16 24 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 25 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 C 0.10 2.82 5.83 86.93 0.51 3.33 16 28 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 29 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.70 8.13 -2.39 -0.02 0.68 16 31 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.12 1.17 8.03 -2.39 -0.02 1.15 16 33 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.10 3.79 7.06 -2.39 -0.02 3.77 16 36 H 0.12 3.42 8.05 -2.38 -0.02 3.40 16 37 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 38 H 0.12 4.55 8.06 -2.91 -0.02 4.52 16 39 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 40 H 0.10 5.66 6.22 -2.91 -0.02 5.64 16 41 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 42 H 0.09 2.73 7.44 -2.39 -0.02 2.71 16 43 H 0.07 2.43 8.03 -2.39 -0.02 2.41 16 Total: -1.00 -76.03 368.67 6.14 -69.89 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 1.04 Total: 26.47 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 5.02 Total: -20.83 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: -2.46 Total: -65.04 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -0.25 Total: -48.44 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.77 Total: -3.28 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -76.03 6.14 -69.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777406148.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.653 kcal (2) G-P(sol) polarization free energy of solvation -76.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds