Wall clock time and date at job start Tue Mar 31 2020 19:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34229 * 116.99988 * 2 1 4 4 O 1.20825 * 120.00047 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99839 * 179.97438 * 3 2 1 6 6 F 1.39894 * 110.88856 * 313.88265 * 5 3 2 7 7 C 1.55165 * 111.03533 * 77.78430 * 5 3 2 8 8 C 1.54335 * 103.01987 * 153.39553 * 7 5 3 9 9 N 1.47021 * 107.26418 * 338.14163 * 8 7 5 10 10 C 1.34781 * 125.64781 * 178.85334 * 9 8 7 11 11 O 1.21284 * 119.99883 * 179.69317 * 10 9 8 12 12 C 1.50700 * 119.99723 * 359.68633 * 10 9 8 13 13 C 1.50707 * 109.46802 * 180.02562 * 12 10 9 14 14 C 1.37639 * 120.12613 * 265.02270 * 13 12 10 15 15 C 1.38609 * 120.24779 * 179.97438 * 14 13 12 16 16 C 1.38649 * 120.50186 * 0.02562 * 15 14 13 17 17 C 1.37604 * 120.24812 * 359.67607 * 16 15 14 18 18 C 1.40691 * 120.12852 * 85.00391 * 13 12 10 19 19 C 1.41397 * 120.24562 * 0.02562 * 18 13 12 20 20 H 1.07999 * 119.99793 * 334.25213 * 19 18 13 21 21 C 1.39938 * 119.99994 * 154.24395 * 19 18 13 22 22 N 1.30831 * 120.00386 * 334.73622 * 21 19 18 23 23 Si 1.86809 * 120.00103 * 154.73684 * 21 19 18 24 24 H 1.48501 * 109.46776 * 89.99891 * 23 21 19 25 25 H 1.48498 * 109.47029 * 209.99945 * 23 21 19 26 26 H 1.48492 * 109.46751 * 330.00017 * 23 21 19 27 27 C 1.47425 * 108.70515 * 358.58529 * 9 8 7 28 28 H 1.09000 * 109.47416 * 59.99954 * 1 2 3 29 29 H 1.09002 * 109.47298 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46639 * 300.00105 * 1 2 3 31 31 H 1.08996 * 110.72107 * 271.95658 * 7 5 3 32 32 H 1.08997 * 110.71901 * 35.04778 * 7 5 3 33 33 H 1.08993 * 109.98890 * 218.66862 * 8 7 5 34 34 H 1.09000 * 109.78008 * 97.49696 * 8 7 5 35 35 H 1.08996 * 109.46878 * 60.00446 * 12 10 9 36 36 H 1.08998 * 109.47275 * 300.00091 * 12 10 9 37 37 H 1.07999 * 119.87647 * 359.95890 * 14 13 12 38 38 H 1.08005 * 119.75136 * 179.97438 * 15 14 13 39 39 H 1.08006 * 119.87708 * 179.97438 * 16 15 14 40 40 H 1.08007 * 120.12595 * 180.29715 * 17 16 15 41 41 H 0.97001 * 119.99273 * 354.24039 * 22 21 19 42 42 H 1.08998 * 110.37128 * 143.19626 * 27 9 8 43 43 H 1.09000 * 110.36682 * 265.51987 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 9 4.1115 0.3964 0.9430 7 6 4.1391 0.9977 -1.4146 8 6 5.4807 1.7605 -1.4022 9 7 5.3872 2.7909 -0.3577 10 6 6.3636 3.6555 -0.0175 11 8 6.1729 4.4708 0.8599 12 6 7.6921 3.6089 -0.7273 13 6 8.6005 4.6708 -0.1630 14 6 8.6886 5.9008 -0.7744 15 6 9.5229 6.8795 -0.2572 16 6 10.2777 6.6322 0.8792 17 6 10.2008 5.4119 1.5104 18 6 9.3615 4.4088 0.9910 19 6 9.2793 3.1489 1.6275 20 1 8.3875 2.5486 1.5236 21 6 10.3534 2.6797 2.3919 22 7 11.5660 3.1056 2.1471 23 14 10.0560 1.4452 3.7621 24 1 10.1633 0.0674 3.2187 25 1 11.0704 1.6367 4.8296 26 1 8.6981 1.6503 4.3268 27 6 4.0463 2.7261 0.2515 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.3012 -0.0700 -1.5627 32 1 3.4771 1.3960 -2.1834 33 1 5.6517 2.2293 -2.3712 34 1 6.2942 1.0723 -1.1723 35 1 7.5416 3.7873 -1.7920 36 1 8.1466 2.6287 -0.5838 37 1 8.1057 6.1041 -1.6605 38 1 9.5862 7.8417 -0.7437 39 1 10.9248 7.4019 1.2733 40 1 10.7860 5.2231 2.3984 41 1 11.7331 3.6809 1.3841 42 1 4.1055 2.9264 1.3213 43 1 3.3753 3.4364 -0.2316 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777406152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:55 Heat of formation + Delta-G solvation = -144.657739 kcal Electronic energy + Delta-G solvation = -29106.904155 eV Core-core repulsion = 24838.424535 eV Total energy + Delta-G solvation = -4268.479621 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.20313 -40.96582 -39.63195 -37.90574 -37.13145 -36.49771 -33.82025 -32.19335 -31.41599 -29.60603 -29.19375 -28.36393 -26.86775 -25.02371 -24.15823 -22.93291 -20.92748 -20.87406 -20.30655 -19.16130 -18.49696 -17.71856 -17.55869 -17.04711 -16.59945 -15.73437 -15.68360 -15.35283 -14.97102 -14.81177 -14.56979 -14.34839 -14.08872 -13.75685 -13.63691 -13.44291 -13.10710 -12.76340 -12.73822 -12.52028 -12.28171 -12.21723 -11.98784 -11.78956 -11.71565 -11.39324 -11.27999 -11.19834 -11.14850 -10.82894 -10.76703 -10.44087 -10.35511 -9.63505 -9.36646 -9.32321 -8.92206 -8.54458 -7.53901 -7.47824 -7.09959 -4.39371 1.50768 1.94042 2.73463 2.87711 3.17776 3.19097 3.20409 3.32956 3.41744 3.57348 3.76755 3.97850 4.05487 4.33595 4.61626 4.61750 4.67675 4.76730 4.86864 5.09840 5.14332 5.26606 5.40131 5.55072 5.55357 5.62644 5.68043 5.78811 5.88967 5.98595 6.18521 6.31173 6.34424 6.38760 6.69791 7.02440 7.10570 7.23281 7.44499 7.63169 7.76393 7.86028 7.88819 7.97870 8.23561 8.37238 8.66875 8.81486 8.95273 10.10274 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013954 B = 0.003455 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.055575 B = 8101.973401 C = 9456.465852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.346 6.346 3 C 0.462 3.538 4 O -0.481 6.481 5 C 0.117 3.883 6 F -0.167 7.167 7 C -0.142 4.142 8 C 0.103 3.897 9 N -0.632 5.632 10 C 0.535 3.465 11 O -0.511 6.511 12 C -0.062 4.062 13 C -0.189 4.189 14 C -0.068 4.068 15 C -0.253 4.253 16 C -0.085 4.085 17 C -0.215 4.215 18 C 0.116 3.884 19 C -0.516 4.516 20 H 0.072 0.928 21 C 0.041 3.959 22 N -0.799 5.799 23 Si 1.060 2.940 24 H -0.277 1.277 25 H -0.273 1.273 26 H -0.275 1.275 27 C 0.103 3.897 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.299 0.701 42 H 0.098 0.902 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.388 -9.500 -8.336 20.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.261 6.261 3 C 0.301 3.699 4 O -0.367 6.367 5 C 0.096 3.904 6 F -0.147 7.147 7 C -0.180 4.180 8 C -0.020 4.020 9 N -0.370 5.370 10 C 0.326 3.674 11 O -0.383 6.383 12 C -0.101 4.101 13 C -0.190 4.190 14 C -0.086 4.086 15 C -0.273 4.273 16 C -0.104 4.104 17 C -0.234 4.234 18 C 0.113 3.887 19 C -0.544 4.544 20 H 0.090 0.910 21 C -0.180 4.180 22 N -0.422 5.422 23 Si 0.883 3.117 24 H -0.203 1.203 25 H -0.198 1.198 26 H -0.200 1.200 27 C -0.020 4.020 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.085 0.915 31 H 0.128 0.872 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.800 -9.515 -6.579 19.582 hybrid contribution -1.086 0.792 -1.146 1.766 sum -16.886 -8.723 -7.725 20.516 Atomic orbital electron populations 1.23397 0.75505 1.04232 1.02932 1.86561 1.24009 1.32280 1.83295 1.23497 0.90965 0.82217 0.73200 1.90733 1.66099 1.36132 1.43724 1.21729 0.85698 0.91950 0.91014 1.92999 1.86152 1.69871 1.65667 1.23310 0.97588 1.03904 0.93208 1.22018 0.96960 0.90492 0.92569 1.48637 1.13274 1.36598 1.38539 1.21092 0.84442 0.78735 0.83143 1.90713 1.80543 1.36441 1.30610 1.20220 0.90264 1.01670 0.97952 1.19000 1.05966 0.94842 0.99241 1.20353 0.97178 0.93235 0.97828 1.20259 1.06237 0.98855 1.01914 1.20611 0.97936 0.96168 0.95686 1.21137 1.06669 0.93845 1.01762 1.17395 0.89664 0.92692 0.88903 1.20457 1.03307 1.02771 1.27834 0.90971 1.26922 0.92016 0.99315 0.99785 1.70435 1.21681 1.24352 1.25761 0.83731 0.77030 0.75185 0.75710 1.20252 1.19808 1.20035 1.22477 0.85957 0.91288 1.02328 0.91500 0.87576 0.91476 0.87192 0.88216 0.90051 0.89935 0.90473 0.88442 0.89585 0.89426 0.89363 0.87759 0.88728 0.88373 0.88346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.35 -3.38 10.55 -39.26 -0.41 -3.79 16 3 C 0.46 5.24 7.04 36.00 0.25 5.49 16 4 O -0.48 -6.34 15.44 -18.75 -0.29 -6.63 16 5 C 0.12 1.36 1.59 -89.62 -0.14 1.22 16 6 F -0.17 -2.28 17.00 2.25 0.04 -2.24 16 7 C -0.14 -1.20 6.22 -24.89 -0.15 -1.35 16 8 C 0.10 1.09 6.49 -3.06 -0.02 1.07 16 9 N -0.63 -9.76 3.33 -170.52 -0.57 -10.33 16 10 C 0.54 10.75 7.48 -10.98 -0.08 10.67 16 11 O -0.51 -12.64 16.29 5.55 0.09 -12.55 16 12 C -0.06 -1.21 4.37 -29.03 -0.13 -1.33 16 13 C -0.19 -4.54 4.43 -103.91 -0.46 -5.00 16 14 C -0.07 -1.55 9.66 -39.66 -0.38 -1.94 16 15 C -0.25 -5.86 10.05 -39.29 -0.39 -6.26 16 16 C -0.09 -2.07 10.02 -39.66 -0.40 -2.47 16 17 C -0.21 -5.70 7.95 -38.87 -0.31 -6.01 16 18 C 0.12 3.10 5.29 -106.83 -0.56 2.54 16 19 C -0.52 -13.69 8.08 -37.74 -0.30 -14.00 16 20 H 0.07 1.90 6.73 -52.49 -0.35 1.55 16 21 C 0.04 1.06 4.94 -17.34 -0.09 0.97 16 22 N -0.80 -21.25 12.34 55.55 0.69 -20.56 16 23 Si 1.06 22.33 30.00 -169.99 -5.10 17.23 16 24 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 27 C 0.10 1.47 5.93 -2.53 -0.02 1.46 16 28 H 0.07 0.38 8.13 -51.93 -0.42 -0.04 16 29 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 31 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.10 0.65 8.03 -51.93 -0.42 0.24 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 36 H 0.10 1.89 7.05 -51.93 -0.37 1.52 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 39 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 40 H 0.10 2.84 6.53 -52.48 -0.34 2.50 16 41 H 0.30 8.13 6.70 -40.82 -0.27 7.86 16 42 H 0.10 1.58 8.04 -51.93 -0.42 1.17 16 43 H 0.10 1.34 7.27 -51.93 -0.38 0.96 16 LS Contribution 367.78 15.07 5.54 5.54 Total: -1.00 -33.30 367.78 -7.70 -41.00 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.57 Total: 5.96 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -2.12 Total: -13.64 kcal Atomic # 7 Polarization: -31.01 SS G_CDS: 0.12 Total: -30.89 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.61 Total: -22.97 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.10 Total: 17.23 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.30 -7.70 -41.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777406152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.653 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds