Wall clock time and date at job start Tue Mar 31 2020 19:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34229 * 116.99988 * 2 1 4 4 O 1.20825 * 120.00047 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99839 * 179.97438 * 3 2 1 6 6 F 1.39894 * 110.88856 * 313.88265 * 5 3 2 7 7 C 1.55165 * 111.03533 * 77.78430 * 5 3 2 8 8 C 1.54335 * 103.01987 * 153.39553 * 7 5 3 9 9 N 1.47021 * 107.26418 * 338.14163 * 8 7 5 10 10 C 1.34781 * 125.64781 * 178.85334 * 9 8 7 11 11 O 1.21284 * 119.99883 * 179.69317 * 10 9 8 12 12 C 1.50700 * 119.99723 * 359.68633 * 10 9 8 13 13 C 1.50707 * 109.46802 * 180.02562 * 12 10 9 14 14 C 1.37639 * 120.12613 * 265.02270 * 13 12 10 15 15 C 1.38609 * 120.24779 * 179.97438 * 14 13 12 16 16 C 1.38649 * 120.50186 * 0.02562 * 15 14 13 17 17 C 1.37604 * 120.24812 * 359.67607 * 16 15 14 18 18 C 1.40691 * 120.12852 * 85.00391 * 13 12 10 19 19 C 1.41397 * 120.24562 * 0.02562 * 18 13 12 20 20 H 1.07999 * 119.99793 * 334.25213 * 19 18 13 21 21 C 1.39938 * 119.99994 * 154.24395 * 19 18 13 22 22 N 1.30831 * 120.00386 * 334.73622 * 21 19 18 23 23 Si 1.86809 * 120.00103 * 154.73684 * 21 19 18 24 24 H 1.48501 * 109.46776 * 89.99891 * 23 21 19 25 25 H 1.48498 * 109.47029 * 209.99945 * 23 21 19 26 26 H 1.48492 * 109.46751 * 330.00017 * 23 21 19 27 27 C 1.47425 * 108.70515 * 358.58529 * 9 8 7 28 28 H 1.09000 * 109.47416 * 59.99954 * 1 2 3 29 29 H 1.09002 * 109.47298 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46639 * 300.00105 * 1 2 3 31 31 H 1.08996 * 110.72107 * 271.95658 * 7 5 3 32 32 H 1.08997 * 110.71901 * 35.04778 * 7 5 3 33 33 H 1.08993 * 109.98890 * 218.66862 * 8 7 5 34 34 H 1.09000 * 109.78008 * 97.49696 * 8 7 5 35 35 H 1.08996 * 109.46878 * 60.00446 * 12 10 9 36 36 H 1.08998 * 109.47275 * 300.00091 * 12 10 9 37 37 H 1.07999 * 119.87647 * 359.95890 * 14 13 12 38 38 H 1.08005 * 119.75136 * 179.97438 * 15 14 13 39 39 H 1.08006 * 119.87708 * 179.97438 * 16 15 14 40 40 H 1.08007 * 120.12595 * 180.29715 * 17 16 15 41 41 H 0.97001 * 119.99273 * 354.24039 * 22 21 19 42 42 H 1.08998 * 110.37128 * 143.19626 * 27 9 8 43 43 H 1.09000 * 110.36682 * 265.51987 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 9 4.1115 0.3964 0.9430 7 6 4.1391 0.9977 -1.4146 8 6 5.4807 1.7605 -1.4022 9 7 5.3872 2.7909 -0.3577 10 6 6.3636 3.6555 -0.0175 11 8 6.1729 4.4708 0.8599 12 6 7.6921 3.6089 -0.7273 13 6 8.6005 4.6708 -0.1630 14 6 8.6886 5.9008 -0.7744 15 6 9.5229 6.8795 -0.2572 16 6 10.2777 6.6322 0.8792 17 6 10.2008 5.4119 1.5104 18 6 9.3615 4.4088 0.9910 19 6 9.2793 3.1489 1.6275 20 1 8.3875 2.5486 1.5236 21 6 10.3534 2.6797 2.3919 22 7 11.5660 3.1056 2.1471 23 14 10.0560 1.4452 3.7621 24 1 10.1633 0.0674 3.2187 25 1 11.0704 1.6367 4.8296 26 1 8.6981 1.6503 4.3268 27 6 4.0463 2.7261 0.2515 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.3012 -0.0700 -1.5627 32 1 3.4771 1.3960 -2.1834 33 1 5.6517 2.2293 -2.3712 34 1 6.2942 1.0723 -1.1723 35 1 7.5416 3.7873 -1.7920 36 1 8.1466 2.6287 -0.5838 37 1 8.1057 6.1041 -1.6605 38 1 9.5862 7.8417 -0.7437 39 1 10.9248 7.4019 1.2733 40 1 10.7860 5.2231 2.3984 41 1 11.7331 3.6809 1.3841 42 1 4.1055 2.9264 1.3213 43 1 3.3753 3.4364 -0.2316 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777406152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:53 Heat of formation + Delta-G solvation = -164.000300 kcal Electronic energy + Delta-G solvation = -29107.742911 eV Core-core repulsion = 24838.424535 eV Total energy + Delta-G solvation = -4269.318377 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.21001 -41.84877 -41.02563 -39.54683 -38.30101 -37.60115 -35.73757 -33.75685 -32.71575 -31.11023 -30.55976 -29.25309 -28.27622 -26.85473 -25.37094 -23.81185 -22.83251 -22.17249 -21.59362 -20.53164 -19.59167 -19.43836 -18.51896 -18.18279 -17.55620 -17.04355 -16.97597 -16.59916 -16.28421 -16.17978 -15.94611 -15.80785 -15.56296 -15.34068 -14.70050 -14.39556 -14.23795 -14.04512 -13.98703 -13.96186 -13.83432 -13.52075 -13.30384 -12.97193 -12.95833 -12.78710 -12.61920 -12.54147 -12.32108 -12.24815 -12.03203 -11.96272 -11.66429 -11.48528 -11.22401 -10.95708 -10.82396 -9.79493 -9.44959 -9.42777 -9.06238 -6.39907 0.63130 0.86828 0.98968 1.13845 1.45749 1.61349 1.67216 1.75778 1.97753 2.29592 2.62670 2.71486 2.87556 3.13328 3.53316 3.53964 3.81784 3.94848 4.07005 4.21692 4.24210 4.29018 4.29210 4.40466 4.45854 4.51688 4.55231 4.61712 4.66866 4.68683 4.72573 4.89783 4.97134 5.02201 5.07863 5.17158 5.32609 5.49967 5.78989 5.84686 5.98393 6.05286 6.27939 6.29345 6.35773 6.46179 6.85940 7.01562 7.18200 8.08673 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013954 B = 0.003455 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.055575 B = 8101.973401 C = 9456.465852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.347 6.347 3 C 0.470 3.530 4 O -0.505 6.505 5 C 0.115 3.885 6 F -0.180 7.180 7 C -0.127 4.127 8 C 0.090 3.910 9 N -0.627 5.627 10 C 0.534 3.466 11 O -0.573 6.573 12 C -0.058 4.058 13 C -0.193 4.193 14 C -0.078 4.078 15 C -0.250 4.250 16 C -0.096 4.096 17 C -0.245 4.245 18 C 0.085 3.915 19 C -0.541 4.541 20 H 0.065 0.935 21 C 0.007 3.993 22 N -0.819 5.819 23 Si 1.105 2.895 24 H -0.250 1.250 25 H -0.269 1.269 26 H -0.280 1.280 27 C 0.099 3.901 28 H 0.074 0.926 29 H 0.138 0.862 30 H 0.062 0.938 31 H 0.137 0.863 32 H 0.126 0.874 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.285 0.715 42 H 0.067 0.933 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.077 -10.982 -10.791 23.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.262 6.262 3 C 0.310 3.690 4 O -0.392 6.392 5 C 0.094 3.906 6 F -0.161 7.161 7 C -0.164 4.164 8 C -0.031 4.031 9 N -0.363 5.363 10 C 0.325 3.675 11 O -0.451 6.451 12 C -0.097 4.097 13 C -0.195 4.195 14 C -0.096 4.096 15 C -0.269 4.269 16 C -0.114 4.114 17 C -0.264 4.264 18 C 0.083 3.917 19 C -0.569 4.569 20 H 0.083 0.917 21 C -0.209 4.209 22 N -0.442 5.442 23 Si 0.923 3.077 24 H -0.174 1.174 25 H -0.193 1.193 26 H -0.205 1.205 27 C -0.025 4.025 28 H 0.093 0.907 29 H 0.156 0.844 30 H 0.081 0.919 31 H 0.155 0.845 32 H 0.145 0.855 33 H 0.131 0.869 34 H 0.105 0.895 35 H 0.137 0.863 36 H 0.115 0.885 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.128 0.872 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.510 -11.056 -9.092 22.616 hybrid contribution -0.699 1.333 -0.488 1.582 sum -18.209 -9.724 -9.580 22.757 Atomic orbital electron populations 1.23746 0.73486 1.06422 1.03159 1.86547 1.25916 1.31083 1.82687 1.23287 0.90625 0.82401 0.72669 1.90729 1.66513 1.36963 1.45037 1.21735 0.86358 0.89839 0.92639 1.92972 1.86438 1.70058 1.66599 1.23418 0.96289 1.05474 0.91235 1.22461 0.98617 0.89743 0.92309 1.48520 1.12673 1.36107 1.38978 1.21025 0.85247 0.78791 0.82424 1.90683 1.81774 1.39389 1.33243 1.20221 0.89276 1.00214 0.99967 1.19518 1.05310 0.96513 0.98166 1.20820 0.97226 0.92682 0.98917 1.20729 1.04884 1.00255 1.01063 1.20908 0.98531 0.95840 0.96169 1.21145 1.07896 0.95345 1.02051 1.17782 0.90706 0.92968 0.90252 1.20523 1.03401 1.03264 1.29739 0.91704 1.28138 0.91388 1.00265 1.01134 1.70527 1.22290 1.25577 1.25813 0.83161 0.76527 0.74563 0.73434 1.17439 1.19334 1.20531 1.22485 0.85619 0.93818 1.00581 0.90682 0.84443 0.91920 0.84456 0.85545 0.86949 0.89510 0.86287 0.88464 0.86032 0.86215 0.87244 0.89930 0.90294 0.91439 0.87672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.56 113.37 1.20 1.45 16 2 O -0.35 -5.97 10.55 -51.41 -0.54 -6.52 16 3 C 0.47 9.88 7.04 71.24 0.50 10.38 16 4 O -0.50 -12.76 15.44 21.97 0.34 -12.42 16 5 C 0.11 2.50 1.59 -10.15 -0.02 2.48 16 6 F -0.18 -4.75 17.00 44.97 0.76 -3.99 16 7 C -0.13 -1.66 6.22 31.79 0.20 -1.46 16 8 C 0.09 1.62 6.49 86.73 0.56 2.18 16 9 N -0.63 -18.69 3.33 -811.78 -2.70 -21.39 16 10 C 0.53 21.38 7.48 87.66 0.66 22.04 16 11 O -0.57 -29.28 16.29 -3.04 -0.05 -29.33 16 12 C -0.06 -2.19 4.37 29.10 0.13 -2.06 16 13 C -0.19 -9.27 4.43 -19.40 -0.09 -9.35 16 14 C -0.08 -3.47 9.66 22.22 0.21 -3.25 16 15 C -0.25 -11.19 10.05 22.46 0.23 -10.97 16 16 C -0.10 -4.68 10.02 22.22 0.22 -4.46 16 17 C -0.24 -13.51 7.95 22.73 0.18 -13.33 16 18 C 0.09 4.71 5.29 -21.29 -0.11 4.60 16 19 C -0.54 -29.82 8.08 23.46 0.19 -29.64 16 20 H 0.06 3.55 6.73 -2.91 -0.02 3.53 16 21 C 0.01 0.38 4.94 85.25 0.42 0.80 16 22 N -0.82 -45.24 12.34 21.83 0.27 -44.97 16 23 Si 1.10 45.95 30.00 68.60 2.06 48.00 16 24 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 26 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 27 C 0.10 2.80 5.93 86.85 0.51 3.31 16 28 H 0.07 0.68 8.13 -2.39 -0.02 0.66 16 29 H 0.14 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 31 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.13 1.05 8.03 -2.39 -0.02 1.03 16 33 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.12 3.43 8.05 -2.39 -0.02 3.41 16 36 H 0.10 3.70 7.05 -2.39 -0.02 3.69 16 37 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 38 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 39 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 40 H 0.08 4.79 6.53 -2.91 -0.02 4.77 16 41 H 0.28 16.30 6.70 -92.71 -0.62 15.68 16 42 H 0.07 2.31 8.04 -2.39 -0.02 2.29 16 43 H 0.11 2.83 7.27 -2.39 -0.02 2.82 16 Total: -1.00 -77.23 367.78 6.32 -70.92 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 1.18 Total: 26.96 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: 5.00 Total: -27.27 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: -2.43 Total: -66.36 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -0.25 Total: -48.26 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.76 Total: -3.99 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.06 Total: 48.00 kcal Total: -77.23 6.32 -70.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777406152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.084 kcal (2) G-P(sol) polarization free energy of solvation -77.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds