Wall clock time and date at job start Tue Mar 31 2020 19:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34234 * 117.00249 * 2 1 4 4 O 1.20827 * 119.99425 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00259 * 180.02562 * 3 2 1 6 6 N 1.46492 * 109.47086 * 185.99791 * 5 3 2 7 7 C 1.36935 * 120.00498 * 83.15492 * 6 5 3 8 8 H 1.07997 * 120.00504 * 166.97651 * 7 6 5 9 9 C 1.38821 * 119.99454 * 346.97359 * 7 6 5 10 10 N 1.31618 * 120.00137 * 359.41080 * 9 7 6 11 11 Si 1.86796 * 119.99679 * 179.40887 * 9 7 6 12 12 H 1.48501 * 109.47288 * 60.00270 * 11 9 7 13 13 H 1.48494 * 109.47169 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47410 * 300.00380 * 11 9 7 15 15 C 1.46499 * 119.99743 * 263.15050 * 6 5 3 16 16 C 1.50703 * 109.47386 * 274.56704 * 15 6 5 17 17 O 1.21275 * 119.99838 * 354.74781 * 16 15 6 18 18 N 1.34775 * 119.99821 * 174.73878 * 16 15 6 19 19 N 1.40111 * 119.99615 * 180.02562 * 18 16 15 20 20 C 1.34775 * 119.99741 * 180.02562 * 19 18 16 21 21 O 1.21556 * 120.00046 * 359.97438 * 20 19 18 22 22 C 1.47849 * 119.99710 * 180.02562 * 20 19 18 23 23 C 1.39576 * 120.14056 * 179.97438 * 22 20 19 24 24 C 1.37960 * 119.85075 * 179.97438 * 23 22 20 25 25 C 1.38363 * 120.14397 * 0.02562 * 24 23 22 26 26 C 1.38356 * 120.29168 * 359.97438 * 25 24 23 27 27 C 1.37956 * 120.15060 * 0.02562 * 26 25 24 28 28 H 1.09008 * 109.47341 * 300.00255 * 1 2 3 29 29 H 1.08998 * 109.47216 * 60.00077 * 1 2 3 30 30 H 1.09003 * 109.47227 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47091 * 65.99536 * 5 3 2 32 32 H 1.08996 * 109.46833 * 305.99940 * 5 3 2 33 33 H 0.96993 * 119.99923 * 179.97438 * 10 9 7 34 34 H 1.09003 * 109.46984 * 154.57146 * 15 6 5 35 35 H 1.09002 * 109.47354 * 34.57008 * 15 6 5 36 36 H 0.96996 * 120.00599 * 0.02562 * 18 16 15 37 37 H 0.96998 * 119.99887 * 359.97438 * 19 18 16 38 38 H 1.07994 * 120.07570 * 359.70246 * 23 22 20 39 39 H 1.07994 * 119.92687 * 179.97438 * 24 23 22 40 40 H 1.07995 * 119.85378 * 179.97438 * 25 24 23 41 41 H 1.08008 * 119.92631 * 180.02562 * 26 25 24 42 42 H 1.07998 * 120.08217 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9821 2.6721 0.1439 7 6 4.0479 3.2420 1.3873 8 1 4.5480 4.1897 1.5212 9 6 3.4715 2.6013 2.4756 10 7 2.8519 1.4519 2.3104 11 14 3.5755 3.3705 4.1747 12 1 2.9214 4.7036 4.1554 13 1 2.8875 2.4952 5.1573 14 1 5.0009 3.5242 4.5622 15 6 4.3277 3.4598 -1.0420 16 6 5.7739 3.2266 -1.3961 17 8 6.4746 2.5527 -0.6711 18 7 6.2884 3.7669 -2.5185 19 7 7.6328 3.5497 -2.8479 20 6 8.1474 4.0904 -3.9701 21 8 7.4451 4.7661 -4.6966 22 6 9.5659 3.8607 -4.3179 23 6 10.1019 4.4188 -5.4796 24 6 11.4264 4.2010 -5.7982 25 6 12.2229 3.4310 -4.9693 26 6 11.6978 2.8749 -3.8163 27 6 10.3749 3.0849 -3.4861 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.9506 0.8766 -0.9396 32 1 3.9610 0.6905 0.8305 33 1 2.4496 1.0041 3.0709 34 1 4.1708 4.5181 -0.8336 35 1 3.6958 3.1562 -1.8767 36 1 5.7280 4.3061 -3.0983 37 1 8.1932 3.0108 -2.2680 38 1 9.4800 5.0160 -6.1298 39 1 11.8423 4.6319 -6.6969 40 1 13.2590 3.2632 -5.2234 41 1 12.3249 2.2751 -3.1733 42 1 9.9660 2.6500 -2.5861 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777596736.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:08 Heat of formation + Delta-G solvation = -51.818430 kcal Electronic energy + Delta-G solvation = -28178.719565 eV Core-core repulsion = 23934.185721 eV Total energy + Delta-G solvation = -4244.533844 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.52972 -39.27762 -38.82194 -38.16193 -35.92539 -35.04067 -34.37842 -32.41552 -31.54776 -31.27714 -30.30354 -28.39207 -26.74343 -25.97433 -24.19606 -22.90692 -22.36713 -21.26841 -20.49218 -19.70063 -18.24908 -17.70985 -17.04445 -16.70938 -16.19601 -15.75310 -15.58229 -15.42378 -15.34699 -15.00084 -14.78362 -14.70792 -14.41587 -14.08799 -13.82391 -13.61258 -13.29518 -13.14811 -12.89391 -12.30951 -12.17750 -12.02153 -11.56392 -11.44626 -11.10922 -11.08171 -10.98453 -10.85536 -10.45695 -10.32437 -10.22067 -10.08162 -9.72317 -9.55940 -9.37417 -9.33190 -9.10041 -8.61504 -8.14674 -7.25845 -5.94800 -3.37265 0.51931 1.01583 1.95025 2.56376 3.14121 3.35200 3.38713 3.40119 3.58358 3.87031 4.03055 4.13883 4.42789 4.47679 4.54586 4.58705 4.81813 5.01227 5.12845 5.18709 5.27825 5.41903 5.50600 5.62714 5.84771 5.90008 5.92731 5.95286 6.02449 6.08610 6.09933 6.14686 6.32530 6.50721 6.73649 6.83323 6.85287 7.24513 7.54047 7.73260 7.84661 7.98020 8.08700 8.70790 8.93288 9.45295 9.57110 9.93396 11.11458 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016233 B = 0.002507 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.442191 B =11168.248977 C =12025.923297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.376 6.376 3 C 0.480 3.520 4 O -0.531 6.531 5 C 0.195 3.805 6 N -0.544 5.544 7 C -0.235 4.235 8 H 0.082 0.918 9 C 0.000 4.000 10 N -0.919 5.919 11 Si 0.929 3.071 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.282 1.282 15 C 0.144 3.856 16 C 0.478 3.522 17 O -0.520 6.520 18 N -0.536 5.536 19 N -0.517 5.517 20 C 0.554 3.446 21 O -0.544 6.544 22 C -0.125 4.125 23 C -0.058 4.058 24 C -0.129 4.129 25 C -0.095 4.095 26 C -0.125 4.125 27 C -0.086 4.086 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.128 0.872 33 H 0.262 0.738 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.426 0.574 37 H 0.428 0.572 38 H 0.138 0.862 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.125 0.793 -13.669 18.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.322 3.678 4 O -0.419 6.419 5 C 0.067 3.933 6 N -0.260 5.260 7 C -0.363 4.363 8 H 0.100 0.900 9 C -0.195 4.195 10 N -0.568 5.568 11 Si 0.758 3.242 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.209 1.209 15 C 0.009 3.991 16 C 0.262 3.738 17 O -0.392 6.392 18 N -0.289 5.289 19 N -0.263 5.263 20 C 0.341 3.659 21 O -0.422 6.422 22 C -0.129 4.129 23 C -0.077 4.077 24 C -0.147 4.147 25 C -0.113 4.113 26 C -0.143 4.143 27 C -0.105 4.105 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.146 0.854 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.268 0.732 37 H 0.271 0.729 38 H 0.156 0.844 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.770 0.961 -13.386 18.525 hybrid contribution -0.217 0.386 1.062 1.151 sum 12.552 1.347 -12.324 17.642 Atomic orbital electron populations 1.22817 0.80067 1.01151 1.01019 1.86508 1.20596 1.36446 1.85755 1.24880 0.93051 0.80069 0.69768 1.90443 1.66859 1.36531 1.48048 1.20431 0.85581 0.86393 1.00931 1.43468 1.72431 1.08346 1.01802 1.19327 1.29031 1.04368 0.83587 0.90037 1.24829 0.98294 0.97150 0.99184 1.69400 1.40563 1.16689 1.30128 0.85935 0.77603 0.78240 0.82384 1.20914 1.21464 1.20863 1.20663 0.87687 0.98767 0.91967 1.24149 0.92997 0.78666 0.77947 1.90671 1.61047 1.38215 1.49230 1.45910 0.99304 1.56568 1.27141 1.44842 1.03034 1.53416 1.25013 1.18335 0.87394 0.80038 0.80139 1.90779 1.60899 1.39988 1.50520 1.19734 0.92518 1.02701 0.97988 1.21279 0.95173 0.96458 0.94766 1.21177 0.93670 0.99531 1.00306 1.21413 1.00029 0.95748 0.94116 1.21146 0.95139 1.00494 0.97563 1.21422 0.94228 0.96275 0.98540 0.93089 0.93782 0.90259 0.93884 0.85417 0.92700 0.88646 0.90384 0.73244 0.72900 0.84447 0.85182 0.85480 0.85132 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.55 101.05 1.07 1.88 16 2 O -0.38 -8.36 10.56 -39.27 -0.41 -8.78 16 3 C 0.48 11.80 5.47 36.01 0.20 12.00 16 4 O -0.53 -14.38 16.02 -18.75 -0.30 -14.68 16 5 C 0.19 4.63 5.63 -5.20 -0.03 4.60 16 6 N -0.54 -13.00 1.56 -175.99 -0.27 -13.27 16 7 C -0.24 -6.20 9.67 -15.06 -0.15 -6.35 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 C 0.00 0.01 5.36 -17.43 -0.09 -0.08 16 10 N -0.92 -25.39 7.91 55.49 0.44 -24.95 16 11 Si 0.93 21.88 29.55 -169.99 -5.02 16.85 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 C 0.14 2.70 6.12 -5.19 -0.03 2.66 16 16 C 0.48 8.58 8.01 -10.98 -0.09 8.49 16 17 O -0.52 -11.19 16.28 5.56 0.09 -11.10 16 18 N -0.54 -7.96 6.26 31.22 0.20 -7.76 16 19 N -0.52 -7.11 6.21 30.53 0.19 -6.92 16 20 C 0.55 7.47 7.89 -12.33 -0.10 7.37 16 21 O -0.54 -8.68 16.19 5.32 0.09 -8.59 16 22 C -0.13 -1.36 5.87 -104.97 -0.62 -1.98 16 23 C -0.06 -0.55 9.60 -39.18 -0.38 -0.93 16 24 C -0.13 -0.95 10.03 -39.64 -0.40 -1.35 16 25 C -0.09 -0.64 10.04 -39.49 -0.40 -1.03 16 26 C -0.13 -0.93 10.03 -39.64 -0.40 -1.33 16 27 C -0.09 -0.78 9.54 -39.18 -0.37 -1.15 16 28 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 29 H 0.04 0.75 8.13 -51.93 -0.42 0.33 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.04 0.90 8.02 -51.93 -0.42 0.49 16 32 H 0.13 3.35 6.31 -51.93 -0.33 3.02 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.10 1.66 8.00 -51.93 -0.42 1.25 16 35 H 0.08 1.30 8.11 -51.93 -0.42 0.88 16 36 H 0.43 5.64 8.00 -182.59 -1.46 4.18 16 37 H 0.43 5.51 6.04 -182.59 -1.10 4.40 16 38 H 0.14 1.31 7.65 -52.49 -0.40 0.90 16 39 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 42 H 0.13 1.04 6.41 -52.49 -0.34 0.70 16 LS Contribution 368.92 15.07 5.56 5.56 Total: -1.00 -34.98 368.92 -8.20 -43.18 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.96 Total: 7.67 kcal Atomic # 6 Polarization: 24.57 SS G_CDS: -1.78 Total: 22.79 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.55 Total: -52.90 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -0.54 Total: -43.15 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.98 -8.20 -43.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777596736.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.642 kcal (2) G-P(sol) polarization free energy of solvation -34.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds