Wall clock time and date at job start Tue Mar 31 2020 19:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34234 * 117.00249 * 2 1 4 4 O 1.20827 * 119.99425 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00259 * 180.02562 * 3 2 1 6 6 N 1.46492 * 109.47086 * 185.99791 * 5 3 2 7 7 C 1.36935 * 120.00498 * 83.15492 * 6 5 3 8 8 H 1.07997 * 120.00504 * 166.97651 * 7 6 5 9 9 C 1.38821 * 119.99454 * 346.97359 * 7 6 5 10 10 N 1.31618 * 120.00137 * 359.41080 * 9 7 6 11 11 Si 1.86796 * 119.99679 * 179.40887 * 9 7 6 12 12 H 1.48501 * 109.47288 * 60.00270 * 11 9 7 13 13 H 1.48494 * 109.47169 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47410 * 300.00380 * 11 9 7 15 15 C 1.46499 * 119.99743 * 263.15050 * 6 5 3 16 16 C 1.50703 * 109.47386 * 274.56704 * 15 6 5 17 17 O 1.21275 * 119.99838 * 354.74781 * 16 15 6 18 18 N 1.34775 * 119.99821 * 174.73878 * 16 15 6 19 19 N 1.40111 * 119.99615 * 180.02562 * 18 16 15 20 20 C 1.34775 * 119.99741 * 180.02562 * 19 18 16 21 21 O 1.21556 * 120.00046 * 359.97438 * 20 19 18 22 22 C 1.47849 * 119.99710 * 180.02562 * 20 19 18 23 23 C 1.39576 * 120.14056 * 179.97438 * 22 20 19 24 24 C 1.37960 * 119.85075 * 179.97438 * 23 22 20 25 25 C 1.38363 * 120.14397 * 0.02562 * 24 23 22 26 26 C 1.38356 * 120.29168 * 359.97438 * 25 24 23 27 27 C 1.37956 * 120.15060 * 0.02562 * 26 25 24 28 28 H 1.09008 * 109.47341 * 300.00255 * 1 2 3 29 29 H 1.08998 * 109.47216 * 60.00077 * 1 2 3 30 30 H 1.09003 * 109.47227 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47091 * 65.99536 * 5 3 2 32 32 H 1.08996 * 109.46833 * 305.99940 * 5 3 2 33 33 H 0.96993 * 119.99923 * 179.97438 * 10 9 7 34 34 H 1.09003 * 109.46984 * 154.57146 * 15 6 5 35 35 H 1.09002 * 109.47354 * 34.57008 * 15 6 5 36 36 H 0.96996 * 120.00599 * 0.02562 * 18 16 15 37 37 H 0.96998 * 119.99887 * 359.97438 * 19 18 16 38 38 H 1.07994 * 120.07570 * 359.70246 * 23 22 20 39 39 H 1.07994 * 119.92687 * 179.97438 * 24 23 22 40 40 H 1.07995 * 119.85378 * 179.97438 * 25 24 23 41 41 H 1.08008 * 119.92631 * 180.02562 * 26 25 24 42 42 H 1.07998 * 120.08217 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9821 2.6721 0.1439 7 6 4.0479 3.2420 1.3873 8 1 4.5480 4.1897 1.5212 9 6 3.4715 2.6013 2.4756 10 7 2.8519 1.4519 2.3104 11 14 3.5755 3.3705 4.1747 12 1 2.9214 4.7036 4.1554 13 1 2.8875 2.4952 5.1573 14 1 5.0009 3.5242 4.5622 15 6 4.3277 3.4598 -1.0420 16 6 5.7739 3.2266 -1.3961 17 8 6.4746 2.5527 -0.6711 18 7 6.2884 3.7669 -2.5185 19 7 7.6328 3.5497 -2.8479 20 6 8.1474 4.0904 -3.9701 21 8 7.4451 4.7661 -4.6966 22 6 9.5659 3.8607 -4.3179 23 6 10.1019 4.4188 -5.4796 24 6 11.4264 4.2010 -5.7982 25 6 12.2229 3.4310 -4.9693 26 6 11.6978 2.8749 -3.8163 27 6 10.3749 3.0849 -3.4861 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.9506 0.8766 -0.9396 32 1 3.9610 0.6905 0.8305 33 1 2.4496 1.0041 3.0709 34 1 4.1708 4.5181 -0.8336 35 1 3.6958 3.1562 -1.8767 36 1 5.7280 4.3061 -3.0983 37 1 8.1932 3.0108 -2.2680 38 1 9.4800 5.0160 -6.1298 39 1 11.8423 4.6319 -6.6969 40 1 13.2590 3.2632 -5.2234 41 1 12.3249 2.2751 -3.1733 42 1 9.9660 2.6500 -2.5861 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777596736.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:07 Heat of formation + Delta-G solvation = -74.908584 kcal Electronic energy + Delta-G solvation = -28179.720829 eV Core-core repulsion = 23934.185721 eV Total energy + Delta-G solvation = -4245.535109 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.60859 -40.79522 -40.31316 -39.16934 -37.63840 -36.47815 -36.16075 -33.66075 -33.14710 -31.91732 -31.40325 -30.07980 -28.34551 -27.67781 -25.16661 -24.15503 -23.42221 -22.46206 -21.82373 -21.35928 -19.31205 -19.08552 -18.74277 -18.12081 -17.60862 -17.31136 -16.90103 -16.70066 -16.61180 -16.52244 -16.26573 -15.84329 -15.52117 -15.43121 -14.99421 -14.85948 -14.75072 -14.34419 -13.99941 -13.87281 -13.63295 -13.23843 -12.91463 -12.71946 -12.68364 -12.64591 -12.38644 -12.26431 -12.10285 -12.04292 -11.99707 -11.48229 -11.36519 -11.30205 -10.89936 -10.57701 -10.05718 -9.96796 -9.38554 -9.13442 -7.94266 -5.37047 -0.21606 0.40094 0.76543 1.46291 1.48746 1.49456 1.54219 1.85466 2.06265 2.33315 2.57254 2.86539 2.95263 3.31121 3.45783 3.53990 3.87000 3.99472 4.07267 4.26310 4.41552 4.44903 4.45341 4.48928 4.50299 4.54263 4.59724 4.72548 4.81825 4.99983 5.05134 5.27594 5.31601 5.41765 5.49785 5.52100 5.59020 5.74397 5.93518 6.02322 6.14858 6.51046 6.81963 6.96458 7.36215 7.55098 7.70449 8.00454 9.09166 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016233 B = 0.002507 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.442191 B =11168.248977 C =12025.923297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.383 6.383 3 C 0.484 3.516 4 O -0.562 6.562 5 C 0.197 3.803 6 N -0.562 5.562 7 C -0.240 4.240 8 H 0.083 0.917 9 C -0.053 4.053 10 N -0.937 5.937 11 Si 0.982 3.018 12 H -0.282 1.282 13 H -0.295 1.295 14 H -0.277 1.277 15 C 0.140 3.860 16 C 0.490 3.510 17 O -0.558 6.558 18 N -0.524 5.524 19 N -0.517 5.517 20 C 0.557 3.443 21 O -0.573 6.573 22 C -0.149 4.149 23 C -0.071 4.071 24 C -0.127 4.127 25 C -0.086 4.086 26 C -0.128 4.128 27 C -0.093 4.093 28 H 0.032 0.968 29 H 0.054 0.946 30 H 0.123 0.877 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.252 0.748 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.436 0.564 37 H 0.433 0.567 38 H 0.130 0.870 39 H 0.157 0.843 40 H 0.160 0.840 41 H 0.155 0.845 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.047 0.796 -15.022 21.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.299 6.299 3 C 0.327 3.673 4 O -0.452 6.452 5 C 0.069 3.931 6 N -0.279 5.279 7 C -0.369 4.369 8 H 0.101 0.899 9 C -0.245 4.245 10 N -0.587 5.587 11 Si 0.811 3.189 12 H -0.208 1.208 13 H -0.221 1.221 14 H -0.203 1.203 15 C 0.008 3.992 16 C 0.275 3.725 17 O -0.433 6.433 18 N -0.276 5.276 19 N -0.264 5.264 20 C 0.346 3.654 21 O -0.453 6.453 22 C -0.153 4.153 23 C -0.090 4.090 24 C -0.145 4.145 25 C -0.103 4.103 26 C -0.146 4.146 27 C -0.111 4.111 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.141 0.859 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.062 0.938 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.279 0.721 37 H 0.276 0.724 38 H 0.148 0.852 39 H 0.174 0.826 40 H 0.178 0.822 41 H 0.172 0.828 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 14.715 0.984 -14.799 20.893 hybrid contribution -0.709 0.391 1.307 1.538 sum 14.006 1.375 -13.492 19.496 Atomic orbital electron populations 1.23123 0.77677 1.03936 1.00622 1.86467 1.22956 1.35258 1.85242 1.24993 0.93372 0.80123 0.68791 1.90410 1.67607 1.37596 1.49629 1.20287 0.85356 0.86514 1.00941 1.43557 1.73222 1.08691 1.02470 1.19594 1.28093 1.04289 0.84899 0.89892 1.25526 0.98960 0.97916 1.02080 1.69576 1.41609 1.17561 1.29960 0.85092 0.77509 0.77235 0.79055 1.20827 1.22075 1.20324 1.20860 0.88248 0.98971 0.91160 1.23480 0.92476 0.78313 0.78214 1.90663 1.61794 1.40123 1.50687 1.45452 1.00323 1.55530 1.26271 1.44931 1.02124 1.53849 1.25473 1.18839 0.88372 0.78958 0.79234 1.90754 1.61908 1.41304 1.51333 1.19636 0.91080 1.05081 0.99547 1.21388 0.96394 0.96779 0.94448 1.21501 0.92596 0.99156 1.01250 1.21852 1.01410 0.93993 0.93095 1.21496 0.94533 1.00360 0.98180 1.21557 0.95035 0.96071 0.98487 0.94906 0.92761 0.85920 0.91383 0.88160 0.93777 0.87379 0.88050 0.72123 0.72361 0.85158 0.82571 0.82239 0.82770 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.43 10.55 113.37 1.20 2.62 16 2 O -0.38 -16.90 10.56 -51.45 -0.54 -17.44 16 3 C 0.48 23.88 5.47 71.24 0.39 24.27 16 4 O -0.56 -30.64 16.02 21.96 0.35 -30.29 16 5 C 0.20 9.47 5.63 85.63 0.48 9.95 16 6 N -0.56 -26.94 1.56 -710.70 -1.11 -28.04 16 7 C -0.24 -12.76 9.67 84.04 0.81 -11.95 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 C -0.05 -2.88 5.36 84.86 0.45 -2.43 16 10 N -0.94 -52.88 7.91 21.65 0.17 -52.71 16 11 Si 0.98 45.58 29.55 68.60 2.03 47.60 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 13 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 14 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 15 C 0.14 5.16 6.12 85.63 0.52 5.69 16 16 C 0.49 17.36 8.01 87.66 0.70 18.06 16 17 O -0.56 -24.02 16.28 -3.01 -0.05 -24.07 16 18 N -0.52 -15.23 6.26 -173.54 -1.09 -16.31 16 19 N -0.52 -14.04 6.21 -175.60 -1.09 -15.13 16 20 C 0.56 14.94 7.89 86.79 0.68 15.63 16 21 O -0.57 -18.36 16.19 -3.89 -0.06 -18.42 16 22 C -0.15 -3.16 5.87 -20.09 -0.12 -3.27 16 23 C -0.07 -1.29 9.60 22.53 0.22 -1.08 16 24 C -0.13 -1.53 10.03 22.23 0.22 -1.31 16 25 C -0.09 -0.85 10.04 22.33 0.22 -0.62 16 26 C -0.13 -1.54 10.03 22.23 0.22 -1.32 16 27 C -0.09 -1.56 9.54 22.53 0.21 -1.34 16 28 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.05 1.79 8.13 -2.39 -0.02 1.77 16 30 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 31 H 0.07 2.84 8.02 -2.39 -0.02 2.82 16 32 H 0.10 5.40 6.31 -2.39 -0.02 5.38 16 33 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 34 H 0.11 3.68 8.00 -2.39 -0.02 3.66 16 35 H 0.10 3.25 8.11 -2.39 -0.02 3.23 16 36 H 0.44 11.19 8.00 -213.32 -1.71 9.48 16 37 H 0.43 11.03 6.04 -213.32 -1.29 9.74 16 38 H 0.13 2.47 7.65 -2.91 -0.02 2.45 16 39 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 40 H 0.16 0.57 8.06 -2.91 -0.02 0.54 16 41 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 42 H 0.13 2.02 6.41 -2.91 -0.02 2.01 16 Total: -1.00 -76.66 368.92 2.93 -73.73 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: -1.91 Total: 28.18 kcal Atomic # 6 Polarization: 46.66 SS G_CDS: 6.23 Total: 52.89 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -3.11 Total: -112.19 kcal Atomic # 8 Polarization: -89.92 SS G_CDS: -0.30 Total: -90.22 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -76.66 2.93 -73.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777596736.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.177 kcal (2) G-P(sol) polarization free energy of solvation -76.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds