Wall clock time and date at job start Tue Mar 31 2020 18:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 116.99570 * 2 1 4 4 O 1.20821 * 120.00339 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99751 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.47296 * 179.97438 * 5 3 2 7 7 C 1.34772 * 120.00449 * 179.97438 * 6 5 3 8 8 O 1.21596 * 120.00053 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00270 * 180.02562 * 7 6 5 10 10 N 1.40099 * 120.00159 * 0.02562 * 9 7 6 11 11 C 1.29798 * 120.00452 * 179.97438 * 10 9 7 12 12 C 1.50702 * 119.99809 * 0.02562 * 11 10 9 13 13 C 1.47376 * 120.00242 * 179.97438 * 11 10 9 14 14 C 1.39802 * 120.08441 * 359.97438 * 13 11 10 15 15 C 1.37725 * 119.91076 * 180.02562 * 14 13 11 16 16 C 1.39070 * 120.08802 * 0.02562 * 15 14 13 17 17 O 1.35656 * 119.91595 * 179.97438 * 16 15 14 18 18 C 1.34812 * 116.99812 * 5.55047 * 17 16 15 19 19 H 1.07993 * 119.99874 * 354.94134 * 18 17 16 20 20 C 1.38637 * 119.99762 * 174.94547 * 18 17 16 21 21 N 1.31564 * 119.99464 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00258 * 359.97438 * 20 18 17 23 23 H 1.48493 * 109.46913 * 90.00017 * 22 20 18 24 24 H 1.48504 * 109.46792 * 210.00331 * 22 20 18 25 25 H 1.48503 * 109.46974 * 330.00386 * 22 20 18 26 26 C 1.39078 * 120.17419 * 0.23275 * 16 15 14 27 27 C 1.37722 * 120.08653 * 359.48647 * 26 16 15 28 28 H 1.08999 * 109.47068 * 60.00359 * 1 2 3 29 29 H 1.09003 * 109.46743 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47359 * 299.99814 * 1 2 3 31 31 H 1.09001 * 109.46991 * 60.00628 * 5 3 2 32 32 H 1.08999 * 109.47321 * 300.00577 * 5 3 2 33 33 H 0.97008 * 119.99449 * 0.02562 * 6 5 3 34 34 H 0.97005 * 120.00065 * 180.02562 * 9 7 6 35 35 H 1.08996 * 109.47225 * 270.00268 * 12 11 10 36 36 H 1.08999 * 109.46867 * 30.00180 * 12 11 10 37 37 H 1.08997 * 109.47208 * 150.00113 * 12 11 10 38 38 H 1.07996 * 120.04463 * 0.02562 * 14 13 11 39 39 H 1.07995 * 119.95563 * 180.02562 * 15 14 13 40 40 H 0.97006 * 119.99356 * 179.97438 * 21 20 18 41 41 H 1.07998 * 119.96098 * 179.74552 * 26 16 15 42 42 H 1.07997 * 120.04695 * 180.23693 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 5.2919 2.9952 0.0007 8 8 6.1294 2.1137 0.0016 9 7 5.6740 4.2877 0.0006 10 7 4.7091 5.3034 0.0000 11 6 5.0770 6.5482 0.0004 12 6 6.5422 6.9008 0.0008 13 6 4.0620 7.6166 -0.0007 14 6 2.7023 7.2915 -0.0027 15 6 1.7567 8.2929 -0.0043 16 6 2.1530 9.6260 -0.0045 17 8 1.2187 10.6095 -0.0065 18 6 -0.0698 10.2299 0.1078 19 1 -0.3251 9.1805 0.1134 20 6 -1.0671 11.1865 0.2181 21 7 -2.3245 10.8160 0.3302 22 14 -0.6255 13.0016 0.2091 23 1 -0.6389 13.5073 -1.1870 24 1 -1.6160 13.7560 1.0185 25 1 0.7295 13.1842 0.7887 26 6 3.5046 9.9535 -0.0079 27 6 4.4563 8.9579 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.9563 0.7808 -0.8892 32 1 3.9557 0.7810 0.8907 33 1 3.3134 3.3831 -0.0005 34 1 6.6171 4.5146 0.0008 35 1 6.8952 6.9855 1.0285 36 1 7.1037 6.1206 -0.5131 37 1 6.6873 7.8512 -0.5128 38 1 2.3938 6.2566 -0.0030 39 1 0.7062 8.0426 -0.0054 40 1 -3.0223 11.4854 0.4078 41 1 3.8085 10.9898 -0.0122 42 1 5.5057 9.2130 0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779823432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:14 Heat of formation + Delta-G solvation = -66.130589 kcal Electronic energy + Delta-G solvation = -27381.629871 eV Core-core repulsion = 23136.475404 eV Total energy + Delta-G solvation = -4245.154466 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -40.95913 -39.97855 -39.37019 -37.83146 -36.97183 -36.23435 -34.67922 -32.98433 -32.42675 -30.63073 -29.50299 -28.67398 -28.28990 -26.91728 -25.49061 -22.64514 -22.06506 -21.70161 -20.85308 -19.77207 -18.92999 -17.99291 -17.70000 -17.40653 -17.05056 -16.91637 -16.51883 -15.72923 -15.40469 -15.12181 -14.49475 -14.42460 -14.38760 -14.13780 -14.04802 -13.92077 -13.79190 -13.44113 -12.92059 -12.88067 -12.62644 -12.43140 -12.38077 -12.16396 -11.94861 -11.43014 -11.37011 -11.16234 -10.94710 -10.92647 -10.86215 -10.64756 -10.29933 -10.13537 -9.50675 -9.48575 -9.16174 -8.77417 -8.43159 -7.29861 -6.56916 -4.21849 1.22016 1.79383 1.96612 2.05084 2.58339 2.61623 3.12276 3.16626 3.18636 3.30297 3.43598 4.11018 4.32088 4.40925 4.52274 4.67256 4.80250 4.87074 4.89294 4.95582 4.97063 4.98073 5.14509 5.22772 5.31341 5.49063 5.60693 5.75887 5.90411 5.92728 6.03567 6.13946 6.18406 6.38102 6.64644 6.68166 6.91301 6.96665 7.16210 7.28426 7.32514 7.42769 7.65977 7.87075 8.02055 8.48462 8.76505 9.36018 10.49472 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010486 B = 0.002654 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.578009 B =10548.736751 C =13188.804152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.455 3.545 4 O -0.492 6.492 5 C 0.146 3.854 6 N -0.726 5.726 7 C 0.741 3.259 8 O -0.594 6.594 9 N -0.588 5.588 10 N -0.291 5.291 11 C 0.187 3.813 12 C -0.158 4.158 13 C -0.159 4.159 14 C -0.022 4.022 15 C -0.230 4.230 16 C 0.175 3.825 17 O -0.205 6.205 18 C -0.390 4.390 19 H 0.111 0.889 20 C 0.066 3.934 21 N -0.869 5.869 22 Si 0.907 3.093 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.258 1.258 26 C -0.198 4.198 27 C -0.043 4.043 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.422 0.578 34 H 0.398 0.602 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.122 0.878 39 H 0.137 0.863 40 H 0.282 0.718 41 H 0.122 0.878 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.841 -14.798 -0.527 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.296 3.704 4 O -0.378 6.378 5 C 0.020 3.980 6 N -0.387 5.387 7 C 0.441 3.559 8 O -0.471 6.471 9 N -0.335 5.335 10 N -0.102 5.102 11 C 0.000 4.000 12 C -0.218 4.218 13 C -0.163 4.163 14 C -0.042 4.042 15 C -0.249 4.249 16 C 0.120 3.880 17 O -0.107 6.107 18 C -0.466 4.466 19 H 0.128 0.872 20 C -0.139 4.139 21 N -0.505 5.505 22 Si 0.732 3.268 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.182 1.182 26 C -0.217 4.217 27 C -0.063 4.063 28 H 0.085 0.915 29 H 0.122 0.878 30 H 0.085 0.915 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.263 0.737 34 H 0.241 0.759 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.140 0.860 39 H 0.155 0.845 40 H 0.093 0.907 41 H 0.140 0.860 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.117 -15.692 -0.518 19.238 hybrid contribution 0.448 1.548 -0.006 1.612 sum 11.565 -14.143 -0.525 18.277 Atomic orbital electron populations 1.23353 0.75367 1.03981 1.03115 1.86457 1.24097 1.32538 1.84090 1.23549 0.91899 0.81945 0.72971 1.90753 1.66636 1.36119 1.44305 1.20420 0.86828 0.84486 1.06309 1.44728 1.07089 1.07544 1.79348 1.15150 0.82493 0.81172 0.77067 1.90991 1.51534 1.45229 1.59302 1.46142 1.07515 1.02851 1.76944 1.74711 1.16938 0.98016 1.20567 1.23171 0.94308 0.90204 0.92284 1.21348 0.92848 1.03820 1.03755 1.17693 0.91313 0.90332 1.16963 1.21000 0.91295 0.98890 0.93061 1.21245 1.00944 0.91985 1.10759 1.19336 0.89055 0.87927 0.91663 1.83530 1.16554 1.32539 1.78083 1.20864 0.77731 0.96487 1.51480 0.87174 1.24527 0.93851 1.00340 0.95227 1.69650 0.99243 1.35760 1.45814 0.86160 0.79319 0.82442 0.78918 1.19693 1.20619 1.18178 1.20096 0.89946 0.99450 1.12206 1.20717 0.98263 0.90884 0.96447 0.91494 0.87771 0.91478 0.87049 0.87037 0.73740 0.75911 0.89562 0.91549 0.89150 0.85995 0.84511 0.90735 0.85976 0.86100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.24 10.57 -39.26 -0.41 -3.65 16 3 C 0.45 4.86 8.03 36.01 0.29 5.15 16 4 O -0.49 -6.86 15.42 -18.75 -0.29 -7.15 16 5 C 0.15 1.41 6.27 -5.20 -0.03 1.38 16 6 N -0.73 -9.09 5.49 -66.42 -0.36 -9.46 16 7 C 0.74 10.27 8.68 -86.92 -0.75 9.52 16 8 O -0.59 -9.37 17.18 5.28 0.09 -9.28 16 9 N -0.59 -7.47 6.12 27.63 0.17 -7.30 16 10 N -0.29 -4.02 9.46 35.10 0.33 -3.69 16 11 C 0.19 2.43 7.10 -79.73 -0.57 1.86 16 12 C -0.16 -1.42 9.03 36.01 0.33 -1.10 16 13 C -0.16 -2.45 5.87 -105.01 -0.62 -3.07 16 14 C -0.02 -0.39 9.57 -39.18 -0.37 -0.77 16 15 C -0.23 -4.68 9.15 -39.46 -0.36 -5.04 16 16 C 0.18 3.73 6.65 -38.96 -0.26 3.47 16 17 O -0.20 -5.04 8.58 0.39 0.00 -5.04 16 18 C -0.39 -10.44 9.94 30.88 0.31 -10.13 16 19 H 0.11 3.02 5.42 -52.49 -0.28 2.74 16 20 C 0.07 1.75 5.49 -17.52 -0.10 1.66 16 21 N -0.87 -24.08 13.96 55.48 0.77 -23.31 16 22 Si 0.91 20.54 28.62 -169.99 -4.86 15.68 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.26 -5.82 7.11 56.52 0.40 -5.41 16 26 C -0.20 -3.47 9.97 -39.46 -0.39 -3.86 16 27 C -0.04 -0.62 9.35 -39.18 -0.37 -0.99 16 28 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 31 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.42 5.79 6.48 -40.82 -0.26 5.53 16 34 H 0.40 4.30 6.53 -182.59 -1.19 3.10 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.52 6.35 -51.93 -0.33 0.19 16 37 H 0.09 0.71 6.46 -51.93 -0.34 0.37 16 38 H 0.12 2.05 7.55 -52.49 -0.40 1.65 16 39 H 0.14 2.96 5.62 -52.49 -0.29 2.67 16 40 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 42 H 0.12 1.31 6.35 -52.49 -0.33 0.98 16 LS Contribution 368.33 15.07 5.55 5.55 Total: -1.00 -31.68 368.33 -6.37 -38.05 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -5.53 Total: 10.21 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.83 Total: -0.61 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.91 Total: -43.76 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.61 Total: -25.12 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.86 Total: 15.68 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.68 -6.37 -38.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779823432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.083 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds