Wall clock time and date at job start Tue Mar 31 2020 18:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 116.99570 * 2 1 4 4 O 1.20821 * 120.00339 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99751 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.47296 * 179.97438 * 5 3 2 7 7 C 1.34772 * 120.00449 * 179.97438 * 6 5 3 8 8 O 1.21596 * 120.00053 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00270 * 180.02562 * 7 6 5 10 10 N 1.40099 * 120.00159 * 0.02562 * 9 7 6 11 11 C 1.29798 * 120.00452 * 179.97438 * 10 9 7 12 12 C 1.50702 * 119.99809 * 0.02562 * 11 10 9 13 13 C 1.47376 * 120.00242 * 179.97438 * 11 10 9 14 14 C 1.39802 * 120.08441 * 359.97438 * 13 11 10 15 15 C 1.37725 * 119.91076 * 180.02562 * 14 13 11 16 16 C 1.39070 * 120.08802 * 0.02562 * 15 14 13 17 17 O 1.35656 * 119.91595 * 179.97438 * 16 15 14 18 18 C 1.34812 * 116.99812 * 5.55047 * 17 16 15 19 19 H 1.07993 * 119.99874 * 354.94134 * 18 17 16 20 20 C 1.38637 * 119.99762 * 174.94547 * 18 17 16 21 21 N 1.31564 * 119.99464 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00258 * 359.97438 * 20 18 17 23 23 H 1.48493 * 109.46913 * 90.00017 * 22 20 18 24 24 H 1.48504 * 109.46792 * 210.00331 * 22 20 18 25 25 H 1.48503 * 109.46974 * 330.00386 * 22 20 18 26 26 C 1.39078 * 120.17419 * 0.23275 * 16 15 14 27 27 C 1.37722 * 120.08653 * 359.48647 * 26 16 15 28 28 H 1.08999 * 109.47068 * 60.00359 * 1 2 3 29 29 H 1.09003 * 109.46743 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47359 * 299.99814 * 1 2 3 31 31 H 1.09001 * 109.46991 * 60.00628 * 5 3 2 32 32 H 1.08999 * 109.47321 * 300.00577 * 5 3 2 33 33 H 0.97008 * 119.99449 * 0.02562 * 6 5 3 34 34 H 0.97005 * 120.00065 * 180.02562 * 9 7 6 35 35 H 1.08996 * 109.47225 * 270.00268 * 12 11 10 36 36 H 1.08999 * 109.46867 * 30.00180 * 12 11 10 37 37 H 1.08997 * 109.47208 * 150.00113 * 12 11 10 38 38 H 1.07996 * 120.04463 * 0.02562 * 14 13 11 39 39 H 1.07995 * 119.95563 * 180.02562 * 15 14 13 40 40 H 0.97006 * 119.99356 * 179.97438 * 21 20 18 41 41 H 1.07998 * 119.96098 * 179.74552 * 26 16 15 42 42 H 1.07997 * 120.04695 * 180.23693 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 5.2919 2.9952 0.0007 8 8 6.1294 2.1137 0.0016 9 7 5.6740 4.2877 0.0006 10 7 4.7091 5.3034 0.0000 11 6 5.0770 6.5482 0.0004 12 6 6.5422 6.9008 0.0008 13 6 4.0620 7.6166 -0.0007 14 6 2.7023 7.2915 -0.0027 15 6 1.7567 8.2929 -0.0043 16 6 2.1530 9.6260 -0.0045 17 8 1.2187 10.6095 -0.0065 18 6 -0.0698 10.2299 0.1078 19 1 -0.3251 9.1805 0.1134 20 6 -1.0671 11.1865 0.2181 21 7 -2.3245 10.8160 0.3302 22 14 -0.6255 13.0016 0.2091 23 1 -0.6389 13.5073 -1.1870 24 1 -1.6160 13.7560 1.0185 25 1 0.7295 13.1842 0.7887 26 6 3.5046 9.9535 -0.0079 27 6 4.4563 8.9579 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.9563 0.7808 -0.8892 32 1 3.9557 0.7810 0.8907 33 1 3.3134 3.3831 -0.0005 34 1 6.6171 4.5146 0.0008 35 1 6.8952 6.9855 1.0285 36 1 7.1037 6.1206 -0.5131 37 1 6.6873 7.8512 -0.5128 38 1 2.3938 6.2566 -0.0030 39 1 0.7062 8.0426 -0.0054 40 1 -3.0223 11.4854 0.4078 41 1 3.8085 10.9898 -0.0122 42 1 5.5057 9.2130 0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779823432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:13 Heat of formation + Delta-G solvation = -88.136376 kcal Electronic energy + Delta-G solvation = -27382.584113 eV Core-core repulsion = 23136.475404 eV Total energy + Delta-G solvation = -4246.108709 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.85657 -41.07524 -40.85563 -39.14454 -37.84960 -37.56487 -35.68497 -34.56456 -33.89445 -32.04627 -30.55717 -29.82060 -29.22086 -27.69308 -27.28466 -23.97183 -23.53555 -22.65199 -21.90752 -20.98710 -19.90933 -19.72600 -19.13734 -18.55791 -18.05208 -17.88058 -17.41412 -16.73077 -16.69780 -16.44090 -15.82334 -15.71399 -15.65189 -15.52960 -15.26988 -15.17424 -14.71133 -14.41083 -14.25259 -14.21726 -14.05464 -13.76549 -13.26730 -13.12653 -13.02579 -12.77733 -12.69872 -12.51453 -12.40497 -11.94475 -11.91407 -11.84678 -11.77683 -11.44408 -11.06170 -10.96950 -10.50425 -10.04142 -9.86158 -8.76942 -8.51623 -6.24494 -0.04437 0.59124 0.93751 1.11157 1.29124 1.34141 1.42555 1.53940 1.68047 2.06083 2.27928 2.43584 2.79837 3.02222 3.17622 3.53354 3.56575 3.97086 4.10420 4.17262 4.18060 4.23242 4.27391 4.30783 4.42442 4.49490 4.66874 4.68891 4.73545 4.82183 4.94996 5.07844 5.20117 5.22641 5.24114 5.34462 5.53965 5.60178 5.71052 5.76677 5.85546 6.15665 6.20617 6.48075 6.81591 6.94750 7.44558 7.52364 8.59484 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010486 B = 0.002654 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.578009 B =10548.736751 C =13188.804152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.461 3.539 4 O -0.531 6.531 5 C 0.144 3.856 6 N -0.728 5.728 7 C 0.738 3.262 8 O -0.613 6.613 9 N -0.579 5.579 10 N -0.304 5.304 11 C 0.183 3.817 12 C -0.157 4.157 13 C -0.134 4.134 14 C -0.033 4.033 15 C -0.246 4.246 16 C 0.141 3.859 17 O -0.233 6.233 18 C -0.402 4.402 19 H 0.080 0.920 20 C 0.011 3.989 21 N -0.921 5.921 22 Si 0.973 3.027 23 H -0.265 1.265 24 H -0.270 1.270 25 H -0.256 1.256 26 C -0.191 4.191 27 C -0.024 4.024 28 H 0.061 0.939 29 H 0.138 0.862 30 H 0.061 0.939 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.416 0.584 34 H 0.409 0.591 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.124 0.876 39 H 0.106 0.894 40 H 0.286 0.714 41 H 0.144 0.856 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.154 -15.236 -0.584 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.305 3.695 4 O -0.421 6.421 5 C 0.019 3.981 6 N -0.387 5.387 7 C 0.438 3.562 8 O -0.491 6.491 9 N -0.327 5.327 10 N -0.115 5.115 11 C -0.005 4.005 12 C -0.216 4.216 13 C -0.138 4.138 14 C -0.053 4.053 15 C -0.265 4.265 16 C 0.090 3.910 17 O -0.139 6.139 18 C -0.478 4.478 19 H 0.098 0.902 20 C -0.188 4.188 21 N -0.561 5.561 22 Si 0.795 3.205 23 H -0.190 1.190 24 H -0.195 1.195 25 H -0.179 1.179 26 C -0.210 4.210 27 C -0.044 4.044 28 H 0.080 0.920 29 H 0.156 0.844 30 H 0.080 0.920 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.255 0.745 34 H 0.254 0.746 35 H 0.124 0.876 36 H 0.098 0.902 37 H 0.129 0.871 38 H 0.142 0.858 39 H 0.124 0.876 40 H 0.095 0.905 41 H 0.162 0.838 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 15.481 -16.191 -0.579 22.409 hybrid contribution -0.551 1.235 -0.002 1.353 sum 14.930 -14.955 -0.581 21.140 Atomic orbital electron populations 1.23618 0.74152 1.06074 1.02620 1.86460 1.25263 1.31502 1.83484 1.23744 0.92239 0.81777 0.71755 1.90747 1.67510 1.37423 1.46382 1.20648 0.86147 0.83331 1.07973 1.44833 1.06584 1.08579 1.78749 1.15241 0.82595 0.81302 0.77032 1.90980 1.52026 1.45740 1.60347 1.46011 1.07890 1.02244 1.76520 1.74669 1.18193 0.98911 1.19761 1.23262 0.96031 0.89215 0.91972 1.21473 0.89230 1.05363 1.05514 1.18065 0.90714 0.92044 1.12938 1.21087 0.92328 0.98307 0.93602 1.21172 1.00252 0.93001 1.12120 1.19922 0.90314 0.87752 0.93046 1.83485 1.15617 1.33194 1.81599 1.20718 0.79425 0.95445 1.52217 0.90218 1.25353 0.93621 1.04749 0.95124 1.69745 1.00262 1.37148 1.48920 0.85176 0.79074 0.77045 0.79217 1.18985 1.19503 1.17944 1.20516 0.88363 1.01558 1.10588 1.21259 1.00369 0.89316 0.93411 0.92020 0.84391 0.92030 0.85262 0.85265 0.74478 0.74609 0.87601 0.90175 0.87054 0.85813 0.87587 0.90465 0.83819 0.80489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.57 16 2 O -0.35 -6.04 10.57 -51.44 -0.54 -6.58 16 3 C 0.46 9.63 8.03 71.24 0.57 10.20 16 4 O -0.53 -15.14 15.42 21.98 0.34 -14.80 16 5 C 0.14 2.59 6.27 85.63 0.54 3.13 16 6 N -0.73 -17.35 5.49 -482.31 -2.65 -19.99 16 7 C 0.74 18.95 8.68 179.06 1.55 20.51 16 8 O -0.61 -17.99 17.18 -4.02 -0.07 -18.05 16 9 N -0.58 -13.05 6.12 -184.74 -1.13 -14.18 16 10 N -0.30 -7.61 9.46 -42.88 -0.41 -8.02 16 11 C 0.18 4.02 7.10 45.27 0.32 4.34 16 12 C -0.16 -1.89 9.03 71.24 0.64 -1.25 16 13 C -0.13 -3.73 5.87 -20.11 -0.12 -3.84 16 14 C -0.03 -1.17 9.57 22.53 0.22 -0.95 16 15 C -0.25 -10.60 9.15 22.35 0.20 -10.39 16 16 C 0.14 6.14 6.65 22.67 0.15 6.29 16 17 O -0.23 -12.00 8.58 -21.51 -0.18 -12.18 16 18 C -0.40 -23.10 9.94 67.92 0.68 -22.42 16 19 H 0.08 4.88 5.42 -2.91 -0.02 4.86 16 20 C 0.01 0.60 5.49 84.83 0.47 1.06 16 21 N -0.92 -54.33 13.96 21.61 0.30 -54.03 16 22 Si 0.97 43.75 28.62 68.60 1.96 45.71 16 23 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 26 C -0.19 -6.25 9.97 22.35 0.22 -6.02 16 27 C -0.02 -0.59 9.35 22.53 0.21 -0.37 16 28 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 29 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 31 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.42 11.22 6.48 -92.70 -0.60 10.62 16 34 H 0.41 7.30 6.53 -213.32 -1.39 5.91 16 35 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 0.81 6.35 -2.39 -0.02 0.80 16 37 H 0.11 0.93 6.46 -2.39 -0.02 0.91 16 38 H 0.12 4.26 7.55 -2.91 -0.02 4.24 16 39 H 0.11 5.16 5.62 -2.91 -0.02 5.15 16 40 H 0.29 15.42 8.31 -92.70 -0.77 14.65 16 41 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 42 H 0.18 2.48 6.35 -2.91 -0.02 2.46 16 Total: -1.00 -74.86 368.33 3.59 -71.28 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: -0.89 Total: 29.02 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 6.85 Total: 1.84 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -3.88 Total: -96.23 kcal Atomic # 8 Polarization: -51.16 SS G_CDS: -0.46 Total: -51.62 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.96 Total: 45.71 kcal Total: -74.86 3.59 -71.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779823432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.861 kcal (2) G-P(sol) polarization free energy of solvation -74.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds