Wall clock time and date at job start Tue Mar 31 2020 18:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46905 * 110.99802 * 2 1 4 4 C 1.50700 * 109.47160 * 293.95565 * 3 2 1 5 5 O 1.20824 * 120.00069 * 0.02562 * 4 3 2 6 6 O 1.34231 * 119.99821 * 179.97438 * 4 3 2 7 7 C 1.45191 * 116.99967 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.47293 * 179.97438 * 7 6 4 9 9 C 1.38635 * 119.74797 * 89.99659 * 8 7 6 10 10 C 1.37620 * 120.24891 * 179.97438 * 9 8 7 11 11 C 1.40718 * 119.74202 * 0.27982 * 10 9 8 12 12 C 1.41400 * 120.24416 * 179.69717 * 11 10 9 13 13 H 1.08006 * 119.99526 * 26.71597 * 12 11 10 14 14 C 1.39942 * 120.00220 * 206.72277 * 12 11 10 15 15 N 1.30823 * 119.99756 * 13.01654 * 14 12 11 16 16 Si 1.86799 * 120.00140 * 193.01666 * 14 12 11 17 17 H 1.48504 * 109.47107 * 59.99762 * 16 14 12 18 18 H 1.48495 * 109.47281 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47235 * 300.00004 * 16 14 12 20 20 C 1.40718 * 119.51306 * 359.47462 * 11 10 9 21 21 C 1.37617 * 119.74312 * 0.49958 * 20 11 10 22 22 C 1.46900 * 111.00472 * 123.95546 * 2 1 3 23 23 H 1.09003 * 108.85053 * 299.97709 * 22 2 1 24 24 C 1.52930 * 108.88946 * 181.53444 * 22 2 1 25 25 C 1.55159 * 108.96108 * 209.10465 * 24 22 2 26 26 S 1.83991 * 100.90743 * 41.43784 * 25 24 22 27 27 C 1.53706 * 108.88659 * 58.54926 * 22 2 1 28 28 H 1.08998 * 109.47043 * 53.68884 * 1 2 3 29 29 H 1.09004 * 109.46913 * 173.69030 * 1 2 3 30 30 H 1.08997 * 109.47125 * 293.68646 * 1 2 3 31 31 H 1.08993 * 109.47154 * 173.95138 * 3 2 1 32 32 H 1.09004 * 109.47009 * 53.95763 * 3 2 1 33 33 H 1.09008 * 109.47521 * 60.00075 * 7 6 4 34 34 H 1.08999 * 109.47342 * 300.00042 * 7 6 4 35 35 H 1.08000 * 119.88072 * 0.02562 * 9 8 7 36 36 H 1.08003 * 120.12854 * 180.02562 * 10 9 8 37 37 H 0.97005 * 119.99913 * 179.97438 * 15 14 12 38 38 H 1.07996 * 120.12660 * 180.25537 * 20 11 10 39 39 H 1.07994 * 119.87339 * 179.75148 * 21 20 11 40 40 H 1.09005 * 109.60587 * 329.03115 * 24 22 2 41 41 H 1.09000 * 109.60974 * 89.17477 * 24 22 2 42 42 H 1.09001 * 111.13244 * 283.52879 * 25 24 22 43 43 H 1.08997 * 111.16652 * 159.36253 * 25 24 22 44 44 H 1.09001 * 110.34267 * 242.49530 * 27 22 2 45 45 H 1.09001 * 110.34118 * 4.74718 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 8 1.0070 1.4480 -2.1375 6 8 2.0163 3.3151 -1.5223 7 6 1.6356 3.9023 -2.7945 8 6 2.1440 5.3191 -2.8661 9 6 3.4033 5.5726 -3.3876 10 6 3.8776 6.8625 -3.4583 11 6 3.0814 7.9256 -2.9934 12 6 3.5607 9.2544 -3.0551 13 1 4.2890 9.5315 -3.8030 14 6 3.0917 10.2104 -2.1471 15 7 2.4152 9.8342 -1.0924 16 14 3.4316 12.0235 -2.4409 17 1 2.8339 12.4356 -3.7364 18 1 2.8322 12.8238 -1.3430 19 1 4.8984 12.2527 -2.4774 20 6 1.8027 7.6569 -2.4708 21 6 1.3487 6.3592 -2.4103 22 6 1.9955 -0.7660 1.1375 23 1 1.6406 -0.3116 2.0626 24 6 3.5233 -0.7024 1.1125 25 6 4.0923 -1.9943 1.7565 26 16 2.9645 -3.2630 1.0468 27 6 1.4655 -2.2064 1.0554 28 1 -0.3633 0.6085 -0.8281 29 1 -0.3633 -1.0215 -0.1129 30 1 -0.3633 0.4128 0.9411 31 1 3.0796 1.3445 0.1083 32 1 1.5611 1.9274 0.8310 33 1 0.5493 3.9015 -2.8845 34 1 2.0679 3.3192 -3.6076 35 1 4.0141 4.7548 -3.7404 36 1 4.8587 7.0578 -3.8654 37 1 2.0904 10.4968 -0.4628 38 1 1.1817 8.4657 -2.1150 39 1 0.3693 6.1503 -2.0060 40 1 3.8693 -0.6248 0.0817 41 1 3.8626 0.1669 1.6757 42 1 4.0113 -1.9603 2.8430 43 1 5.1229 -2.1674 1.4469 44 1 0.8474 -2.4328 1.9242 45 1 0.8962 -2.3489 0.1369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784105062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:16 Heat of formation + Delta-G solvation = -56.345971 kcal Electronic energy + Delta-G solvation = -25563.017110 eV Core-core repulsion = 21864.580151 eV Total energy + Delta-G solvation = -3698.436959 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.38984 -38.74554 -37.65237 -36.04454 -33.90141 -33.87454 -31.00043 -30.32354 -29.40325 -28.27659 -27.22334 -26.06644 -23.89188 -23.35383 -21.13093 -21.00480 -20.09322 -20.06747 -17.67318 -17.40759 -17.04642 -16.86770 -16.38374 -16.04877 -15.41677 -14.96684 -14.79782 -14.54137 -14.22654 -13.98977 -13.79876 -13.56715 -13.20472 -12.81915 -12.70285 -12.64109 -12.27951 -12.20737 -12.05830 -12.02030 -11.77870 -11.66341 -11.54830 -11.40527 -11.18034 -11.03075 -10.86805 -10.47404 -10.38954 -10.16304 -10.08723 -9.72287 -9.47704 -9.29101 -8.74080 -7.99759 -7.59092 -7.45321 -6.84735 -4.50129 1.49623 1.95060 2.36926 2.41820 2.88143 2.97645 3.00660 3.03207 3.18274 3.64611 3.84597 4.06696 4.35131 4.50324 4.55829 4.60482 4.76632 4.89241 4.92996 5.07584 5.14354 5.14902 5.24194 5.29927 5.30839 5.41213 5.58290 5.63633 5.64196 5.66730 5.84822 6.03511 6.21935 6.28249 6.49216 6.60611 6.83157 6.87202 6.96223 7.15236 7.24369 7.49289 7.70516 7.93496 7.97548 8.08002 8.17117 8.51907 8.76780 8.83922 10.08334 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.024307 B = 0.001887 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.648055 B =14837.189407 C =15113.754731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.519 5.519 3 C 0.055 3.945 4 C 0.456 3.544 5 O -0.502 6.502 6 O -0.352 6.352 7 C 0.138 3.862 8 C -0.233 4.233 9 C -0.065 4.065 10 C -0.228 4.228 11 C 0.118 3.882 12 C -0.456 4.456 13 H 0.079 0.921 14 C 0.073 3.927 15 N -0.792 5.792 16 Si 0.913 3.087 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.265 1.265 20 C -0.167 4.167 21 C -0.078 4.078 22 C 0.083 3.917 23 H 0.054 0.946 24 C -0.130 4.130 25 C -0.066 4.066 26 S -0.289 6.289 27 C -0.065 4.065 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.026 0.974 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.282 0.718 38 H 0.122 0.878 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.230 -16.966 7.969 18.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.245 5.245 3 C -0.074 4.074 4 C 0.298 3.702 5 O -0.391 6.391 6 O -0.268 6.268 7 C 0.066 3.934 8 C -0.234 4.234 9 C -0.084 4.084 10 C -0.247 4.247 11 C 0.115 3.885 12 C -0.485 4.485 13 H 0.097 0.903 14 C -0.145 4.145 15 N -0.417 5.417 16 Si 0.737 3.263 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.189 1.189 20 C -0.186 4.186 21 C -0.096 4.096 22 C -0.026 4.026 23 H 0.072 0.928 24 C -0.169 4.169 25 C -0.214 4.214 26 S -0.064 6.064 27 C -0.213 4.213 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.045 0.955 31 H 0.135 0.865 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.140 0.860 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.127 0.873 44 H 0.109 0.891 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.205 -18.371 7.120 19.740 hybrid contribution -0.392 2.352 1.044 2.603 sum -1.597 -16.019 8.164 18.050 Atomic orbital electron populations 1.22677 0.86001 1.03407 1.01497 1.61803 1.09115 1.11583 1.42006 1.21668 1.03280 0.88852 0.93593 1.23288 0.76911 0.81085 0.88918 1.90604 1.37070 1.65143 1.46250 1.86701 1.71800 1.26518 1.41830 1.21726 0.98687 0.91841 0.81155 1.18708 0.98480 0.90903 1.15336 1.20404 0.93922 0.95888 0.98179 1.21004 0.99593 0.92304 1.11807 1.17704 0.90375 0.92587 0.87832 1.19642 1.21619 0.93479 1.13792 0.90267 1.25962 0.93107 1.01709 0.93755 1.69794 1.27249 1.36611 1.08032 0.86285 0.79775 0.81111 0.79100 1.18759 1.20255 1.18912 1.21352 0.96606 0.94998 1.05626 1.20551 0.97526 0.93336 0.98207 1.22163 0.94823 0.93162 0.92460 0.92834 1.22585 0.93201 0.97570 1.03576 1.24289 1.01057 0.93645 1.02420 1.87919 1.09083 1.24752 1.84656 1.24068 0.97263 0.93532 1.06449 0.89165 0.90788 0.95542 0.86453 0.90518 0.92094 0.92010 0.89240 0.88663 0.90659 0.86016 0.89351 0.88649 0.89656 0.89058 0.87256 0.89082 0.86842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 8.83 60.06 0.53 0.65 16 2 N -0.52 -5.37 4.24 -235.93 -1.00 -6.37 16 3 C 0.05 0.60 5.31 -4.97 -0.03 0.57 16 4 C 0.46 6.96 7.63 36.01 0.27 7.24 16 5 O -0.50 -8.70 14.10 -18.75 -0.26 -8.96 16 6 O -0.35 -6.26 10.20 -39.26 -0.40 -6.66 16 7 C 0.14 2.57 5.58 36.01 0.20 2.77 16 8 C -0.23 -5.05 5.54 -104.33 -0.58 -5.63 16 9 C -0.07 -1.44 9.67 -39.66 -0.38 -1.83 16 10 C -0.23 -5.44 9.80 -38.87 -0.38 -5.82 16 11 C 0.12 3.05 5.56 -106.82 -0.59 2.46 16 12 C -0.46 -11.70 9.07 -37.74 -0.34 -12.04 16 13 H 0.08 1.94 7.88 -52.48 -0.41 1.52 16 14 C 0.07 1.77 5.22 -17.34 -0.09 1.68 16 15 N -0.79 -19.82 10.84 55.55 0.60 -19.22 16 16 Si 0.91 18.03 29.58 -169.99 -5.03 13.00 16 17 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 18 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 19 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 20 C -0.17 -4.21 8.67 -38.87 -0.34 -4.55 16 21 C -0.08 -1.78 9.67 -39.66 -0.38 -2.16 16 22 C 0.08 0.67 2.47 -67.38 -0.17 0.50 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 C -0.13 -0.94 4.40 -25.62 -0.11 -1.05 16 25 C -0.07 -0.44 7.52 38.30 0.29 -0.15 16 26 S -0.29 -2.72 23.23 -107.50 -2.50 -5.22 16 27 C -0.06 -0.52 6.35 37.52 0.24 -0.28 16 28 H 0.09 1.11 5.81 -51.93 -0.30 0.81 16 29 H 0.07 0.63 6.34 -51.93 -0.33 0.30 16 30 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.12 1.11 6.15 -51.93 -0.32 0.79 16 32 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 33 H 0.06 1.09 8.07 -51.92 -0.42 0.67 16 34 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.10 2.13 8.06 -52.48 -0.42 1.71 16 37 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 38 H 0.12 3.16 6.17 -52.49 -0.32 2.84 16 39 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.09 0.83 7.70 -51.93 -0.40 0.43 16 41 H 0.08 0.49 7.81 -51.93 -0.41 0.09 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.11 1.00 6.41 -51.93 -0.33 0.67 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -28.61 376.51 -11.38 -39.99 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.60 Total: 5.43 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -1.86 Total: -17.65 kcal Atomic # 7 Polarization: -25.20 SS G_CDS: -0.40 Total: -25.59 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.67 Total: -15.62 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Atomic # 16 Polarization: -2.72 SS G_CDS: -2.50 Total: -5.22 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.61 -11.38 -39.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784105062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.358 kcal (2) G-P(sol) polarization free energy of solvation -28.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds