Wall clock time and date at job start Tue Mar 31 2020 18:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46905 * 110.99802 * 2 1 4 4 C 1.50700 * 109.47160 * 293.95565 * 3 2 1 5 5 O 1.20824 * 120.00069 * 0.02562 * 4 3 2 6 6 O 1.34231 * 119.99821 * 179.97438 * 4 3 2 7 7 C 1.45191 * 116.99967 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.47293 * 179.97438 * 7 6 4 9 9 C 1.38635 * 119.74797 * 89.99659 * 8 7 6 10 10 C 1.37620 * 120.24891 * 179.97438 * 9 8 7 11 11 C 1.40718 * 119.74202 * 0.27982 * 10 9 8 12 12 C 1.41400 * 120.24416 * 179.69717 * 11 10 9 13 13 H 1.08006 * 119.99526 * 26.71597 * 12 11 10 14 14 C 1.39942 * 120.00220 * 206.72277 * 12 11 10 15 15 N 1.30823 * 119.99756 * 13.01654 * 14 12 11 16 16 Si 1.86799 * 120.00140 * 193.01666 * 14 12 11 17 17 H 1.48504 * 109.47107 * 59.99762 * 16 14 12 18 18 H 1.48495 * 109.47281 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47235 * 300.00004 * 16 14 12 20 20 C 1.40718 * 119.51306 * 359.47462 * 11 10 9 21 21 C 1.37617 * 119.74312 * 0.49958 * 20 11 10 22 22 C 1.46900 * 111.00472 * 123.95546 * 2 1 3 23 23 H 1.09003 * 108.85053 * 299.97709 * 22 2 1 24 24 C 1.52930 * 108.88946 * 181.53444 * 22 2 1 25 25 C 1.55159 * 108.96108 * 209.10465 * 24 22 2 26 26 S 1.83991 * 100.90743 * 41.43784 * 25 24 22 27 27 C 1.53706 * 108.88659 * 58.54926 * 22 2 1 28 28 H 1.08998 * 109.47043 * 53.68884 * 1 2 3 29 29 H 1.09004 * 109.46913 * 173.69030 * 1 2 3 30 30 H 1.08997 * 109.47125 * 293.68646 * 1 2 3 31 31 H 1.08993 * 109.47154 * 173.95138 * 3 2 1 32 32 H 1.09004 * 109.47009 * 53.95763 * 3 2 1 33 33 H 1.09008 * 109.47521 * 60.00075 * 7 6 4 34 34 H 1.08999 * 109.47342 * 300.00042 * 7 6 4 35 35 H 1.08000 * 119.88072 * 0.02562 * 9 8 7 36 36 H 1.08003 * 120.12854 * 180.02562 * 10 9 8 37 37 H 0.97005 * 119.99913 * 179.97438 * 15 14 12 38 38 H 1.07996 * 120.12660 * 180.25537 * 20 11 10 39 39 H 1.07994 * 119.87339 * 179.75148 * 21 20 11 40 40 H 1.09005 * 109.60587 * 329.03115 * 24 22 2 41 41 H 1.09000 * 109.60974 * 89.17477 * 24 22 2 42 42 H 1.09001 * 111.13244 * 283.52879 * 25 24 22 43 43 H 1.08997 * 111.16652 * 159.36253 * 25 24 22 44 44 H 1.09001 * 110.34267 * 242.49530 * 27 22 2 45 45 H 1.09001 * 110.34118 * 4.74718 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 8 1.0070 1.4480 -2.1375 6 8 2.0163 3.3151 -1.5223 7 6 1.6356 3.9023 -2.7945 8 6 2.1440 5.3191 -2.8661 9 6 3.4033 5.5726 -3.3876 10 6 3.8776 6.8625 -3.4583 11 6 3.0814 7.9256 -2.9934 12 6 3.5607 9.2544 -3.0551 13 1 4.2890 9.5315 -3.8030 14 6 3.0917 10.2104 -2.1471 15 7 2.4152 9.8342 -1.0924 16 14 3.4316 12.0235 -2.4409 17 1 2.8339 12.4356 -3.7364 18 1 2.8322 12.8238 -1.3430 19 1 4.8984 12.2527 -2.4774 20 6 1.8027 7.6569 -2.4708 21 6 1.3487 6.3592 -2.4103 22 6 1.9955 -0.7660 1.1375 23 1 1.6406 -0.3116 2.0626 24 6 3.5233 -0.7024 1.1125 25 6 4.0923 -1.9943 1.7565 26 16 2.9645 -3.2630 1.0468 27 6 1.4655 -2.2064 1.0554 28 1 -0.3633 0.6085 -0.8281 29 1 -0.3633 -1.0215 -0.1129 30 1 -0.3633 0.4128 0.9411 31 1 3.0796 1.3445 0.1083 32 1 1.5611 1.9274 0.8310 33 1 0.5493 3.9015 -2.8845 34 1 2.0679 3.3192 -3.6076 35 1 4.0141 4.7548 -3.7404 36 1 4.8587 7.0578 -3.8654 37 1 2.0904 10.4968 -0.4628 38 1 1.1817 8.4657 -2.1150 39 1 0.3693 6.1503 -2.0060 40 1 3.8693 -0.6248 0.0817 41 1 3.8626 0.1669 1.6757 42 1 4.0113 -1.9603 2.8430 43 1 5.1229 -2.1674 1.4469 44 1 0.8474 -2.4328 1.9242 45 1 0.8962 -2.3489 0.1369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784105062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:15 Heat of formation + Delta-G solvation = -70.084803 kcal Electronic energy + Delta-G solvation = -25563.612870 eV Core-core repulsion = 21864.580151 eV Total energy + Delta-G solvation = -3699.032719 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58783 -39.75697 -39.24780 -37.39079 -35.66332 -34.59764 -32.64629 -31.27083 -31.13670 -29.29192 -28.55703 -26.99013 -25.44257 -24.11085 -22.95433 -22.18078 -21.76471 -20.82816 -19.26404 -18.76433 -17.82365 -17.76848 -17.64647 -17.15888 -17.07492 -16.06585 -15.83810 -15.68362 -15.43989 -15.20340 -15.10116 -14.57447 -14.32383 -14.10639 -13.86812 -13.77982 -13.67600 -13.52104 -13.29690 -13.04034 -12.82640 -12.72837 -12.69507 -12.59886 -12.46995 -12.25877 -12.09917 -11.96833 -11.64935 -11.58771 -11.35039 -11.27194 -11.07559 -10.88685 -9.47974 -9.43114 -9.30296 -8.70602 -8.64786 -6.41069 0.71952 0.89043 1.10379 1.22778 1.35503 1.39006 1.45789 1.51031 1.84636 2.20072 2.68335 2.84228 3.47662 3.63036 3.76988 3.82731 3.97026 4.03262 4.09337 4.10614 4.18227 4.24242 4.29835 4.45721 4.47294 4.47532 4.52907 4.55337 4.58508 4.63736 4.78374 4.85173 5.00529 5.04255 5.08433 5.12358 5.30447 5.39571 5.54724 5.65403 5.73576 5.87764 5.92437 6.05967 6.13861 6.32240 6.64724 6.83027 6.89176 6.96879 8.30787 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.024307 B = 0.001887 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.648055 B =14837.189407 C =15113.754731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.535 5.535 3 C 0.062 3.938 4 C 0.455 3.545 5 O -0.525 6.525 6 O -0.364 6.364 7 C 0.143 3.857 8 C -0.226 4.226 9 C -0.067 4.067 10 C -0.242 4.242 11 C 0.086 3.914 12 C -0.493 4.493 13 H 0.079 0.921 14 C 0.032 3.968 15 N -0.824 5.824 16 Si 0.986 3.014 17 H -0.260 1.260 18 H -0.268 1.268 19 H -0.259 1.259 20 C -0.190 4.190 21 C -0.082 4.082 22 C 0.085 3.915 23 H 0.073 0.927 24 C -0.130 4.130 25 C -0.049 4.049 26 S -0.352 6.352 27 C -0.053 4.053 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.136 0.864 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.289 0.711 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.117 0.883 44 H 0.108 0.892 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.826 -17.509 9.317 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.261 5.261 3 C -0.066 4.066 4 C 0.298 3.702 5 O -0.414 6.414 6 O -0.281 6.281 7 C 0.071 3.929 8 C -0.227 4.227 9 C -0.086 4.086 10 C -0.261 4.261 11 C 0.083 3.917 12 C -0.522 4.522 13 H 0.097 0.903 14 C -0.183 4.183 15 N -0.450 5.450 16 Si 0.806 3.194 17 H -0.185 1.185 18 H -0.192 1.192 19 H -0.183 1.183 20 C -0.209 4.209 21 C -0.101 4.101 22 C -0.023 4.023 23 H 0.091 0.909 24 C -0.169 4.169 25 C -0.197 4.197 26 S -0.127 6.127 27 C -0.201 4.201 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.154 0.846 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.097 0.903 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.135 0.865 44 H 0.126 0.874 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.800 -18.945 8.474 20.769 hybrid contribution -0.554 2.309 0.634 2.457 sum -1.353 -16.636 9.108 19.014 Atomic orbital electron populations 1.22612 0.85988 1.03600 1.01150 1.61755 1.09331 1.11358 1.43696 1.21741 1.04504 0.89062 0.91288 1.24140 0.75972 0.79956 0.90112 1.90603 1.38092 1.65294 1.47439 1.86658 1.72281 1.28135 1.40983 1.21517 0.98977 0.90238 0.82174 1.19023 0.97938 0.92354 1.13376 1.20721 0.94394 0.95968 0.97482 1.21214 0.99982 0.92831 1.12085 1.18064 0.91083 0.93601 0.88911 1.19897 1.22984 0.94398 1.14927 0.90274 1.26812 0.92502 1.06010 0.92974 1.69851 1.28052 1.38275 1.08775 0.85189 0.79773 0.75271 0.79117 1.18478 1.19190 1.18309 1.21323 0.96736 0.95682 1.07165 1.20785 0.98523 0.92845 0.97910 1.22244 0.95249 0.92610 0.92222 0.90917 1.22590 0.92650 0.98602 1.03032 1.24364 1.00470 0.91652 1.03205 1.88154 1.11669 1.27438 1.85418 1.24058 0.96281 0.93106 1.06630 0.91909 0.89849 0.93925 0.84604 0.88556 0.91483 0.91075 0.86398 0.87861 0.90000 0.87600 0.87563 0.90297 0.87506 0.87222 0.86502 0.87391 0.87985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 8.83 127.69 1.13 1.38 16 2 N -0.54 -9.84 4.24 -900.34 -3.82 -13.65 16 3 C 0.06 1.20 5.31 85.56 0.45 1.65 16 4 C 0.45 13.08 7.63 71.24 0.54 13.63 16 5 O -0.53 -17.63 14.10 21.97 0.31 -17.32 16 6 O -0.36 -12.27 10.20 -51.43 -0.52 -12.80 16 7 C 0.14 5.12 5.58 71.24 0.40 5.51 16 8 C -0.23 -9.57 5.54 -19.67 -0.11 -9.68 16 9 C -0.07 -2.91 9.67 22.22 0.21 -2.69 16 10 C -0.24 -11.65 9.80 22.73 0.22 -11.43 16 11 C 0.09 4.57 5.56 -21.29 -0.12 4.46 16 12 C -0.49 -26.01 9.07 23.46 0.21 -25.80 16 13 H 0.08 3.99 7.88 -2.91 -0.02 3.97 16 14 C 0.03 1.58 5.22 85.26 0.45 2.02 16 15 N -0.82 -42.16 10.84 21.83 0.24 -41.92 16 16 Si 0.99 37.13 29.58 68.60 2.03 39.16 16 17 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 18 H -0.27 -9.52 7.11 99.48 0.71 -8.82 16 19 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 20 C -0.19 -9.86 8.67 22.73 0.20 -9.66 16 21 C -0.08 -3.77 9.67 22.22 0.21 -3.56 16 22 C 0.09 1.11 2.47 45.13 0.11 1.23 16 23 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 24 C -0.13 -1.49 4.40 31.31 0.14 -1.35 16 25 C -0.05 -0.53 7.52 72.72 0.55 0.02 16 26 S -0.35 -6.22 23.23 -56.49 -1.31 -7.53 16 27 C -0.05 -0.74 6.35 72.22 0.46 -0.28 16 28 H 0.06 1.49 5.81 -2.39 -0.01 1.48 16 29 H 0.08 1.30 6.34 -2.39 -0.02 1.29 16 30 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.14 2.12 6.15 -2.39 -0.01 2.11 16 32 H 0.10 1.52 8.12 -2.38 -0.02 1.50 16 33 H 0.07 2.30 8.07 -2.38 -0.02 2.28 16 34 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 35 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.10 4.66 8.06 -2.91 -0.02 4.63 16 37 H 0.29 13.37 8.30 -92.70 -0.77 12.60 16 38 H 0.11 5.74 6.17 -2.91 -0.02 5.73 16 39 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 40 H 0.08 1.20 7.70 -2.38 -0.02 1.18 16 41 H 0.11 0.80 7.81 -2.39 -0.02 0.78 16 42 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.10 1.68 6.41 -2.39 -0.02 1.66 16 Total: -1.00 -63.46 376.51 2.97 -60.49 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.99 Total: 28.13 kcal Atomic # 6 Polarization: -39.61 SS G_CDS: 5.06 Total: -34.56 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -3.58 Total: -55.57 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.21 Total: -30.12 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Atomic # 16 Polarization: -6.22 SS G_CDS: -1.31 Total: -7.53 kcal Total: -63.46 2.97 -60.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784105062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.595 kcal (2) G-P(sol) polarization free energy of solvation -63.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds