Wall clock time and date at job start Tue Mar 31 2020 18:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 N 1.41598 * 114.00189 * 2 1 4 4 C 1.46506 * 120.00037 * 275.55418 * 3 2 1 5 5 C 1.34773 * 120.00382 * 95.54716 * 3 2 1 6 6 O 1.21587 * 120.00123 * 177.35121 * 5 3 2 7 7 C 1.47606 * 119.99669 * 357.35735 * 5 3 2 8 8 C 1.39752 * 120.06979 * 21.75657 * 7 5 3 9 9 C 1.37662 * 119.92753 * 180.25671 * 8 7 5 10 10 C 1.39179 * 120.07291 * 359.47206 * 9 8 7 11 11 N 1.39266 * 119.93372 * 180.27465 * 10 9 8 12 12 C 1.34787 * 119.99843 * 143.57571 * 11 10 9 13 13 O 1.21360 * 119.99666 * 3.54103 * 12 11 10 14 14 C 1.49367 * 119.99550 * 183.54317 * 12 11 10 15 15 O 1.21353 * 120.00600 * 0.02562 * 14 12 11 16 16 N 1.34780 * 119.99287 * 179.97438 * 14 12 11 17 17 C 1.46495 * 119.99649 * 180.02562 * 16 14 12 18 18 C 1.50707 * 109.47219 * 180.02562 * 17 16 14 19 19 H 1.07996 * 119.99670 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99988 * 179.97438 * 18 17 16 21 21 N 1.31520 * 120.00065 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99853 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47327 * 60.00138 * 22 20 18 24 24 H 1.48497 * 109.47031 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47038 * 299.99932 * 22 20 18 26 26 C 1.39177 * 120.13371 * 0.25832 * 10 9 8 27 27 C 1.37667 * 120.07135 * 359.97438 * 26 10 9 28 28 H 1.09003 * 109.47174 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46949 * 300.00170 * 1 2 3 30 30 H 1.09000 * 109.47146 * 59.99926 * 1 2 3 31 31 H 1.08999 * 109.47069 * 269.99779 * 4 3 2 32 32 H 1.09002 * 109.46955 * 29.98992 * 4 3 2 33 33 H 1.09000 * 109.47606 * 149.99577 * 4 3 2 34 34 H 1.07993 * 120.03513 * 0.02562 * 8 7 5 35 35 H 1.07996 * 119.96202 * 179.75585 * 9 8 7 36 36 H 0.96996 * 120.00347 * 323.58015 * 11 10 9 37 37 H 0.96997 * 119.99900 * 0.02562 * 16 14 12 38 38 H 1.09005 * 109.47112 * 299.99861 * 17 16 14 39 39 H 1.08994 * 109.47493 * 60.00196 * 17 16 14 40 40 H 0.97003 * 119.99273 * 180.02562 * 21 20 18 41 41 H 1.07996 * 119.96505 * 180.02562 * 26 10 9 42 42 H 1.07994 * 120.03519 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 2.1907 2.0127 -1.2628 5 6 2.3821 1.8633 1.1617 6 8 2.9206 2.9534 1.1575 7 6 2.1416 1.1638 2.4390 8 6 1.9597 -0.2217 2.4552 9 6 1.7303 -0.8704 3.6475 10 6 1.6905 -0.1494 4.8373 11 7 1.4639 -0.8094 6.0426 12 6 2.0938 -0.4024 7.1625 13 8 2.8083 0.5781 7.1346 14 6 1.9124 -1.1584 8.4380 15 8 1.1983 -2.1392 8.4658 16 7 2.5426 -0.7516 9.5577 17 6 2.3652 -1.4933 10.8085 18 6 3.1704 -0.8369 11.9004 19 1 3.7561 0.0443 11.6840 20 6 3.1594 -1.3614 13.1754 21 7 2.4465 -2.4349 13.4387 22 14 4.1580 -0.5482 14.5285 23 1 3.6958 0.8509 14.7121 24 1 3.9780 -1.3000 15.7964 25 1 5.5946 -0.5497 14.1524 26 6 1.8769 1.2297 4.8251 27 6 2.1019 1.8849 3.6355 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.1712 1.7750 -1.6754 32 1 1.4168 1.7123 -1.9692 33 1 2.1224 3.0857 -1.0835 34 1 1.9953 -0.7824 1.5329 35 1 1.5857 -1.9406 3.6602 36 1 0.8529 -1.5620 6.0760 37 1 3.1137 0.0321 9.5354 38 1 1.3108 -1.4927 11.0849 39 1 2.7048 -2.5201 10.6734 40 1 2.4385 -2.8036 14.3359 41 1 1.8458 1.7864 5.7500 42 1 2.2469 2.9551 3.6268 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787593801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:50 Heat of formation + Delta-G solvation = -52.488311 kcal Electronic energy + Delta-G solvation = -27498.861146 eV Core-core repulsion = 23254.298254 eV Total energy + Delta-G solvation = -4244.562893 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.06512 -40.37011 -38.87509 -37.91308 -37.74839 -35.29447 -34.26175 -33.47209 -32.42030 -31.28182 -30.57001 -28.06493 -27.71466 -26.66875 -25.01297 -23.35862 -22.92800 -21.86842 -20.87758 -20.02536 -18.82573 -18.63735 -17.77427 -17.07228 -16.67062 -16.49357 -15.82043 -15.77604 -15.68612 -15.15906 -15.07296 -14.84003 -14.55379 -14.38466 -14.24034 -13.88032 -13.56839 -13.40778 -13.29465 -13.14229 -12.82218 -12.78303 -12.36263 -12.08907 -11.96791 -11.68468 -11.32545 -11.05799 -11.04674 -10.92573 -10.51945 -10.36685 -10.23915 -9.54422 -9.53706 -9.31109 -9.13672 -8.86652 -8.44600 -8.16664 -6.24972 -4.32674 0.48322 1.17569 1.36695 1.65860 2.38827 2.56462 3.23570 3.28158 3.30354 3.44604 3.48600 3.65272 3.95716 4.29248 4.51838 4.60813 4.70588 4.71730 4.76269 4.83708 4.95772 4.97404 5.06881 5.10247 5.11819 5.21209 5.24710 5.34531 5.79126 5.84331 5.90757 6.03780 6.11743 6.19496 6.67622 6.88560 6.90814 7.02153 7.12072 7.31376 7.50070 7.61364 7.74372 7.83018 8.30775 8.49491 8.77855 9.33802 10.84938 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.031837 B = 0.001883 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.263485 B =14862.834379 C =15580.296645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 O -0.140 6.140 3 N -0.480 5.480 4 C 0.085 3.915 5 C 0.577 3.423 6 O -0.520 6.520 7 C -0.166 4.166 8 C -0.061 4.061 9 C -0.158 4.158 10 C 0.181 3.819 11 N -0.653 5.653 12 C 0.509 3.491 13 O -0.499 6.499 14 C 0.492 3.508 15 O -0.535 6.535 16 N -0.669 5.669 17 C 0.246 3.754 18 C -0.548 4.548 19 H 0.066 0.934 20 C 0.066 3.934 21 N -0.885 5.885 22 Si 0.907 3.093 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C -0.134 4.134 27 C -0.037 4.037 28 H 0.110 0.890 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.156 0.844 35 H 0.135 0.865 36 H 0.425 0.575 37 H 0.405 0.595 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.268 0.732 41 H 0.146 0.854 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.523 4.887 -29.137 30.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 O -0.144 6.144 3 N -0.260 5.260 4 C -0.055 4.055 5 C 0.369 3.631 6 O -0.396 6.396 7 C -0.170 4.170 8 C -0.079 4.079 9 C -0.178 4.178 10 C 0.085 3.915 11 N -0.300 5.300 12 C 0.292 3.708 13 O -0.371 6.371 14 C 0.270 3.730 15 O -0.414 6.414 16 N -0.318 5.318 17 C 0.127 3.873 18 C -0.586 4.586 19 H 0.084 0.916 20 C -0.138 4.138 21 N -0.522 5.522 22 Si 0.734 3.266 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.154 4.154 27 C -0.057 4.057 28 H 0.128 0.872 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.173 0.827 35 H 0.153 0.847 36 H 0.264 0.736 37 H 0.240 0.760 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.164 0.836 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.141 5.141 -28.858 29.760 hybrid contribution 0.119 0.191 0.722 0.756 sum -5.022 5.332 -28.136 29.074 Atomic orbital electron populations 1.23419 0.81282 1.04313 1.01807 1.90561 1.20611 1.07053 1.96169 1.49903 1.58468 1.10254 1.07336 1.21931 1.02464 0.97205 0.83917 1.18419 0.77596 0.84288 0.82830 1.90846 1.42828 1.20239 1.85735 1.19691 1.10109 0.94493 0.92725 1.21857 0.94113 0.93292 0.98672 1.20986 1.05487 1.00198 0.91164 1.18066 0.96636 0.91584 0.85213 1.43219 1.45415 1.35134 1.06210 1.20995 0.79496 0.84867 0.85416 1.90751 1.36200 1.25161 1.85023 1.19619 0.83148 0.85634 0.84600 1.90740 1.38868 1.26595 1.85196 1.46441 1.44814 1.30914 1.09593 1.19367 0.98174 0.92236 0.77572 1.21159 1.29979 1.13584 0.93925 0.91560 1.24937 0.95438 0.94844 0.98627 1.69957 1.39415 1.21063 1.21762 0.86409 0.80374 0.79371 0.80424 1.19941 1.21016 1.19941 1.21258 1.02310 0.92613 0.99268 1.21112 0.93935 1.00505 0.90118 0.87166 0.92330 0.92652 0.91383 0.90480 0.89303 0.82688 0.84742 0.73626 0.76013 0.94628 0.94636 0.92242 0.83600 0.84509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.05 10.93 101.05 1.10 1.06 16 2 O -0.14 -0.97 7.75 -11.47 -0.09 -1.06 16 3 N -0.48 -4.09 3.36 -68.12 -0.23 -4.32 16 4 C 0.09 0.50 10.76 59.85 0.64 1.14 16 5 C 0.58 6.51 7.61 -12.44 -0.09 6.41 16 6 O -0.52 -7.26 16.14 5.29 0.09 -7.17 16 7 C -0.17 -1.83 5.82 -104.94 -0.61 -2.44 16 8 C -0.06 -0.57 8.52 -39.23 -0.33 -0.90 16 9 C -0.16 -1.51 9.95 -39.44 -0.39 -1.91 16 10 C 0.18 2.15 6.26 -83.78 -0.52 1.63 16 11 N -0.65 -8.32 5.30 -10.28 -0.05 -8.38 16 12 C 0.51 8.19 7.71 -11.62 -0.09 8.10 16 13 O -0.50 -8.67 14.00 5.49 0.08 -8.59 16 14 C 0.49 9.45 7.89 -11.62 -0.09 9.35 16 15 O -0.53 -11.33 16.48 5.49 0.09 -11.24 16 16 N -0.67 -14.01 5.54 -61.94 -0.34 -14.35 16 17 C 0.25 6.25 5.43 -5.19 -0.03 6.22 16 18 C -0.55 -14.56 9.28 -34.44 -0.32 -14.88 16 19 H 0.07 1.67 7.60 -52.49 -0.40 1.27 16 20 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -25.24 13.29 55.43 0.74 -24.51 16 22 Si 0.91 20.58 29.54 -169.99 -5.02 15.56 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 26 C -0.13 -1.69 8.65 -39.44 -0.34 -2.03 16 27 C -0.04 -0.43 9.58 -39.22 -0.38 -0.81 16 28 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 0.56 7.46 -51.93 -0.39 0.17 16 34 H 0.16 1.22 5.11 -52.50 -0.27 0.95 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.43 4.66 8.29 -40.82 -0.34 4.33 16 37 H 0.40 7.87 7.79 -40.82 -0.32 7.55 16 38 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.15 1.98 6.34 -52.49 -0.33 1.65 16 42 H 0.14 1.52 7.79 -52.49 -0.41 1.11 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -32.81 370.30 -5.69 -38.49 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -4.97 Total: 7.36 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: -1.55 Total: 12.64 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.11 Total: -51.56 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: 0.16 Total: -28.07 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.81 -5.69 -38.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787593801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.996 kcal (2) G-P(sol) polarization free energy of solvation -32.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds