Wall clock time and date at job start Tue Mar 31 2020 18:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 N 1.41598 * 114.00189 * 2 1 4 4 C 1.46506 * 120.00037 * 275.55418 * 3 2 1 5 5 C 1.34773 * 120.00382 * 95.54716 * 3 2 1 6 6 O 1.21587 * 120.00123 * 177.35121 * 5 3 2 7 7 C 1.47606 * 119.99669 * 357.35735 * 5 3 2 8 8 C 1.39752 * 120.06979 * 21.75657 * 7 5 3 9 9 C 1.37662 * 119.92753 * 180.25671 * 8 7 5 10 10 C 1.39179 * 120.07291 * 359.47206 * 9 8 7 11 11 N 1.39266 * 119.93372 * 180.27465 * 10 9 8 12 12 C 1.34787 * 119.99843 * 143.57571 * 11 10 9 13 13 O 1.21360 * 119.99666 * 3.54103 * 12 11 10 14 14 C 1.49367 * 119.99550 * 183.54317 * 12 11 10 15 15 O 1.21353 * 120.00600 * 0.02562 * 14 12 11 16 16 N 1.34780 * 119.99287 * 179.97438 * 14 12 11 17 17 C 1.46495 * 119.99649 * 180.02562 * 16 14 12 18 18 C 1.50707 * 109.47219 * 180.02562 * 17 16 14 19 19 H 1.07996 * 119.99670 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99988 * 179.97438 * 18 17 16 21 21 N 1.31520 * 120.00065 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99853 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47327 * 60.00138 * 22 20 18 24 24 H 1.48497 * 109.47031 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47038 * 299.99932 * 22 20 18 26 26 C 1.39177 * 120.13371 * 0.25832 * 10 9 8 27 27 C 1.37667 * 120.07135 * 359.97438 * 26 10 9 28 28 H 1.09003 * 109.47174 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46949 * 300.00170 * 1 2 3 30 30 H 1.09000 * 109.47146 * 59.99926 * 1 2 3 31 31 H 1.08999 * 109.47069 * 269.99779 * 4 3 2 32 32 H 1.09002 * 109.46955 * 29.98992 * 4 3 2 33 33 H 1.09000 * 109.47606 * 149.99577 * 4 3 2 34 34 H 1.07993 * 120.03513 * 0.02562 * 8 7 5 35 35 H 1.07996 * 119.96202 * 179.75585 * 9 8 7 36 36 H 0.96996 * 120.00347 * 323.58015 * 11 10 9 37 37 H 0.96997 * 119.99900 * 0.02562 * 16 14 12 38 38 H 1.09005 * 109.47112 * 299.99861 * 17 16 14 39 39 H 1.08994 * 109.47493 * 60.00196 * 17 16 14 40 40 H 0.97003 * 119.99273 * 180.02562 * 21 20 18 41 41 H 1.07996 * 119.96505 * 180.02562 * 26 10 9 42 42 H 1.07994 * 120.03519 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 2.1907 2.0127 -1.2628 5 6 2.3821 1.8633 1.1617 6 8 2.9206 2.9534 1.1575 7 6 2.1416 1.1638 2.4390 8 6 1.9597 -0.2217 2.4552 9 6 1.7303 -0.8704 3.6475 10 6 1.6905 -0.1494 4.8373 11 7 1.4639 -0.8094 6.0426 12 6 2.0938 -0.4024 7.1625 13 8 2.8083 0.5781 7.1346 14 6 1.9124 -1.1584 8.4380 15 8 1.1983 -2.1392 8.4658 16 7 2.5426 -0.7516 9.5577 17 6 2.3652 -1.4933 10.8085 18 6 3.1704 -0.8369 11.9004 19 1 3.7561 0.0443 11.6840 20 6 3.1594 -1.3614 13.1754 21 7 2.4465 -2.4349 13.4387 22 14 4.1580 -0.5482 14.5285 23 1 3.6958 0.8509 14.7121 24 1 3.9780 -1.3000 15.7964 25 1 5.5946 -0.5497 14.1524 26 6 1.8769 1.2297 4.8251 27 6 2.1019 1.8849 3.6355 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.1712 1.7750 -1.6754 32 1 1.4168 1.7123 -1.9692 33 1 2.1224 3.0857 -1.0835 34 1 1.9953 -0.7824 1.5329 35 1 1.5857 -1.9406 3.6602 36 1 0.8529 -1.5620 6.0760 37 1 3.1137 0.0321 9.5354 38 1 1.3108 -1.4927 11.0849 39 1 2.7048 -2.5201 10.6734 40 1 2.4385 -2.8036 14.3359 41 1 1.8458 1.7864 5.7500 42 1 2.2469 2.9551 3.6268 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787593801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:49 Heat of formation + Delta-G solvation = -76.553855 kcal Electronic energy + Delta-G solvation = -27499.904707 eV Core-core repulsion = 23254.298254 eV Total energy + Delta-G solvation = -4245.606453 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.23528 -41.31214 -40.16441 -38.99734 -38.54359 -36.69209 -35.83867 -34.37588 -34.09308 -32.14459 -31.51249 -29.76044 -28.45625 -27.35040 -26.34551 -24.74127 -23.88585 -23.26204 -21.65780 -21.46661 -20.23158 -19.41932 -18.85393 -18.33384 -17.79902 -17.38518 -17.30908 -17.08283 -16.87502 -16.50592 -16.10416 -15.87240 -15.68025 -15.36476 -15.14108 -15.10149 -14.89082 -14.39589 -14.14156 -14.07330 -13.96016 -13.76451 -13.66682 -13.44782 -13.03575 -12.83521 -12.77966 -12.70921 -12.39125 -12.22418 -11.78661 -11.55957 -11.49322 -11.02374 -10.84042 -10.71441 -10.21983 -10.07130 -10.06126 -9.39841 -8.31656 -6.47660 -0.47437 0.31224 0.32943 0.78682 1.19155 1.44720 1.47115 1.55005 1.56195 2.05891 2.35491 2.64612 2.71980 2.80442 3.03750 3.38875 3.79833 3.91275 3.93144 4.22674 4.30277 4.35793 4.41399 4.43491 4.47223 4.54638 4.78686 4.83811 4.91714 4.96949 5.05251 5.13403 5.17181 5.17839 5.23652 5.27127 5.30107 5.50125 5.76170 5.77866 5.89389 6.24587 6.43075 6.56394 6.69115 6.83798 6.96925 7.25168 8.79528 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.031837 B = 0.001883 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.263485 B =14862.834379 C =15580.296645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 O -0.144 6.144 3 N -0.476 5.476 4 C 0.080 3.920 5 C 0.571 3.429 6 O -0.557 6.557 7 C -0.168 4.168 8 C -0.050 4.050 9 C -0.141 4.141 10 C 0.161 3.839 11 N -0.633 5.633 12 C 0.521 3.479 13 O -0.513 6.513 14 C 0.495 3.505 15 O -0.555 6.555 16 N -0.672 5.672 17 C 0.263 3.737 18 C -0.564 4.564 19 H 0.079 0.921 20 C 0.011 3.989 21 N -0.924 5.924 22 Si 0.981 3.019 23 H -0.265 1.265 24 H -0.282 1.282 25 H -0.265 1.265 26 C -0.144 4.144 27 C -0.046 4.046 28 H 0.137 0.863 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.177 0.823 35 H 0.165 0.835 36 H 0.435 0.565 37 H 0.413 0.587 38 H 0.007 0.993 39 H 0.007 0.993 40 H 0.271 0.729 41 H 0.131 0.869 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.454 4.629 -31.066 31.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 O -0.148 6.148 3 N -0.254 5.254 4 C -0.059 4.059 5 C 0.363 3.637 6 O -0.437 6.437 7 C -0.172 4.172 8 C -0.068 4.068 9 C -0.161 4.161 10 C 0.067 3.933 11 N -0.281 5.281 12 C 0.303 3.697 13 O -0.387 6.387 14 C 0.275 3.725 15 O -0.434 6.434 16 N -0.322 5.322 17 C 0.141 3.859 18 C -0.601 4.601 19 H 0.097 0.903 20 C -0.189 4.189 21 N -0.562 5.562 22 Si 0.804 3.196 23 H -0.189 1.189 24 H -0.207 1.207 25 H -0.190 1.190 26 C -0.164 4.164 27 C -0.066 4.066 28 H 0.155 0.845 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.124 0.876 33 H 0.100 0.900 34 H 0.194 0.806 35 H 0.183 0.817 36 H 0.275 0.725 37 H 0.250 0.750 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.080 0.920 41 H 0.149 0.851 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.103 4.869 -30.874 31.670 hybrid contribution -0.010 0.213 1.114 1.134 sum -5.113 5.082 -29.760 30.620 Atomic orbital electron populations 1.23659 0.79531 1.06093 1.02051 1.90523 1.22328 1.05748 1.96170 1.49870 1.57552 1.10736 1.07254 1.22128 1.03890 0.96659 0.83240 1.18459 0.77590 0.83988 0.83672 1.90823 1.44691 1.21748 1.86457 1.19855 1.09527 0.95337 0.92476 1.22077 0.92879 0.92493 0.99393 1.21265 1.03398 1.01508 0.89901 1.18204 0.98336 0.91487 0.85323 1.42990 1.44549 1.34957 1.05558 1.20163 0.80095 0.84423 0.85006 1.90763 1.37257 1.25623 1.85071 1.20108 0.81841 0.85254 0.85293 1.90722 1.39380 1.27544 1.85787 1.46168 1.45868 1.31140 1.09050 1.18847 0.96207 0.91360 0.79466 1.21538 1.30117 1.14026 0.94461 0.90290 1.25937 0.96420 0.95300 1.01265 1.70090 1.40944 1.22615 1.22510 0.85257 0.78868 0.78485 0.76952 1.18943 1.20737 1.18989 1.21168 1.03115 0.93162 0.98958 1.21097 0.94574 1.00598 0.90335 0.84508 0.93192 0.91360 0.90844 0.87591 0.90048 0.80646 0.81727 0.72466 0.75044 0.97488 0.97526 0.92038 0.85145 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.09 10.93 113.37 1.24 1.15 16 2 O -0.14 -1.56 7.75 -38.78 -0.30 -1.86 16 3 N -0.48 -7.23 3.36 -487.69 -1.64 -8.87 16 4 C 0.08 0.79 10.76 127.77 1.38 2.17 16 5 C 0.57 12.43 7.61 86.72 0.66 13.09 16 6 O -0.56 -15.72 16.14 -3.99 -0.06 -15.78 16 7 C -0.17 -3.51 5.82 -20.07 -0.12 -3.63 16 8 C -0.05 -0.80 8.52 22.50 0.19 -0.61 16 9 C -0.14 -2.29 9.95 22.36 0.22 -2.06 16 10 C 0.16 3.60 6.26 38.41 0.24 3.84 16 11 N -0.63 -15.37 5.30 -304.80 -1.61 -16.98 16 12 C 0.52 16.57 7.71 87.24 0.67 17.24 16 13 O -0.51 -17.79 14.00 -3.28 -0.05 -17.83 16 14 C 0.50 19.22 7.89 87.24 0.69 19.90 16 15 O -0.55 -23.78 16.48 -3.26 -0.05 -23.83 16 16 N -0.67 -28.75 5.54 -468.23 -2.59 -31.34 16 17 C 0.26 13.81 5.43 85.64 0.46 14.27 16 18 C -0.56 -30.26 9.28 25.60 0.24 -30.02 16 19 H 0.08 3.94 7.60 -2.91 -0.02 3.92 16 20 C 0.01 0.62 5.46 84.65 0.46 1.08 16 21 N -0.92 -53.65 13.29 21.45 0.28 -53.36 16 22 Si 0.98 41.97 29.54 68.60 2.03 43.99 16 23 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 26 C -0.14 -3.59 8.65 22.36 0.19 -3.39 16 27 C -0.05 -1.09 9.58 22.50 0.22 -0.87 16 28 H 0.14 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.08 0.96 7.46 -2.39 -0.02 0.94 16 34 H 0.18 2.13 5.11 -3.01 -0.02 2.11 16 35 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.43 8.82 8.29 -92.71 -0.77 8.05 16 37 H 0.41 16.22 7.79 -92.71 -0.72 15.50 16 38 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 39 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 41 H 0.13 3.64 6.34 -2.91 -0.02 3.62 16 42 H 0.13 3.11 7.79 -2.91 -0.02 3.09 16 Total: -1.00 -72.30 370.30 2.35 -69.95 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: -0.40 Total: 23.75 kcal Atomic # 6 Polarization: 25.43 SS G_CDS: 6.75 Total: 32.18 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -5.56 Total: -110.56 kcal Atomic # 8 Polarization: -58.85 SS G_CDS: -0.46 Total: -59.31 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Total: -72.30 2.35 -69.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787593801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.605 kcal (2) G-P(sol) polarization free energy of solvation -72.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds