Wall clock time and date at job start Tue Mar 31 2020 18:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45205 * 109.47263 * 2 1 4 4 C 1.34653 * 116.99757 * 179.97438 * 3 2 1 5 5 O 1.21518 * 119.99899 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99839 * 179.97438 * 4 3 2 7 7 C 1.40071 * 120.00080 * 175.39143 * 6 4 3 8 8 C 1.38895 * 119.98857 * 35.56169 * 7 6 4 9 9 C 1.38021 * 120.00154 * 180.25185 * 8 7 6 10 10 C 1.38941 * 119.99479 * 359.48999 * 9 8 7 11 11 N 1.39844 * 120.00825 * 180.27464 * 10 9 8 12 12 C 1.34773 * 119.99745 * 33.48634 * 11 10 9 13 13 O 1.21389 * 120.00021 * 5.09533 * 12 11 10 14 14 C 1.49334 * 119.99932 * 185.09963 * 12 11 10 15 15 O 1.21356 * 119.99852 * 359.97438 * 14 12 11 16 16 N 1.34773 * 119.99932 * 179.97438 * 14 12 11 17 17 C 1.46500 * 120.00133 * 179.97438 * 16 14 12 18 18 C 1.50696 * 109.47298 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00347 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00111 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99612 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00003 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47542 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47435 * 119.99765 * 22 20 18 25 25 H 1.48504 * 109.46704 * 239.99222 * 22 20 18 26 26 C 1.38946 * 119.98835 * 0.26033 * 10 9 8 27 27 C 1.38017 * 119.99126 * 359.97438 * 26 10 9 28 28 H 1.08999 * 109.47230 * 299.99925 * 1 2 3 29 29 H 1.08998 * 109.47169 * 59.99531 * 1 2 3 30 30 H 1.08995 * 109.47753 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46742 * 239.99966 * 2 1 3 32 32 H 1.08998 * 109.46823 * 120.00050 * 2 1 3 33 33 H 0.96996 * 119.99666 * 355.40419 * 6 4 3 34 34 H 1.07994 * 120.00136 * 0.02562 * 8 7 6 35 35 H 1.07997 * 120.00377 * 179.77401 * 9 8 7 36 36 H 0.96997 * 120.00279 * 213.48396 * 11 10 9 37 37 H 0.97001 * 120.00201 * 359.97438 * 16 14 12 38 38 H 1.09002 * 109.47139 * 299.99906 * 17 16 14 39 39 H 1.09003 * 109.47085 * 59.99587 * 17 16 14 40 40 H 0.97003 * 119.99301 * 180.02562 * 21 20 18 41 41 H 1.07992 * 120.00455 * 180.02562 * 26 10 9 42 42 H 1.07995 * 120.00098 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3490 1.5453 0.0005 5 8 4.0891 0.5816 0.0005 6 7 3.8641 2.7907 0.0000 7 6 5.2491 2.9758 0.0981 8 6 6.1145 2.0760 -0.5107 9 6 7.4794 2.2552 -0.4099 10 6 7.9873 3.3416 0.2916 11 7 9.3701 3.5266 0.3891 12 6 10.1720 3.1635 -0.6314 13 8 9.6887 2.7623 -1.6701 14 6 11.6553 3.2545 -0.4842 15 8 12.1385 3.6560 0.5541 16 7 12.4573 2.8909 -1.5045 17 6 13.9124 2.9808 -1.3604 18 6 14.5729 2.5181 -2.6334 19 1 13.9692 2.1895 -3.4665 20 6 15.9480 2.5132 -2.7344 21 7 16.6832 2.9129 -1.7197 22 14 16.7666 1.9403 -4.3127 23 1 15.7255 1.5457 -5.2954 24 1 17.5852 3.0444 -4.8747 25 1 17.6399 0.7749 -4.0224 26 6 7.1213 4.2444 0.8962 27 6 5.7566 4.0620 0.7991 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 3.2758 3.5589 -0.0680 34 1 5.7196 1.2342 -1.0599 35 1 8.1523 1.5536 -0.8802 36 1 9.7519 3.9163 1.1910 37 1 12.0711 2.5697 -2.3343 38 1 14.1945 4.0143 -1.1592 39 1 14.2353 2.3485 -0.5333 40 1 17.6506 2.9098 -1.7909 41 1 7.5158 5.0891 1.4412 42 1 5.0833 4.7638 1.2686 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787601294.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:33 Heat of formation + Delta-G solvation = -143.485770 kcal Electronic energy + Delta-G solvation = -26930.456443 eV Core-core repulsion = 22681.947604 eV Total energy + Delta-G solvation = -4248.508838 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.24183 -41.84048 -40.41417 -39.41949 -37.95958 -36.80937 -36.23999 -35.02924 -34.34280 -32.56319 -32.05055 -30.16542 -29.49274 -26.50003 -24.96689 -24.45252 -23.93582 -23.04511 -22.15249 -21.45005 -20.39961 -19.87785 -18.74551 -18.64345 -18.28070 -17.84703 -17.53358 -17.18441 -17.03224 -16.87437 -16.09924 -15.80483 -15.51022 -15.27186 -15.20175 -14.86760 -14.81765 -14.36770 -14.12952 -14.09383 -13.92820 -13.81357 -13.55872 -13.03145 -12.99628 -12.82085 -12.76641 -12.55727 -12.40924 -12.21999 -12.18312 -11.75028 -11.55469 -11.50897 -10.86730 -10.85870 -10.65555 -10.06552 -9.99090 -8.91108 -8.32188 -6.48065 -0.18160 0.35305 0.47387 0.96598 1.26210 1.43878 1.44621 1.57808 1.58545 2.07369 2.35632 2.69435 2.74091 3.03387 3.04401 3.41970 3.84946 3.94223 4.01622 4.07307 4.23453 4.30995 4.35526 4.41619 4.58148 4.75680 4.93077 4.97084 5.02860 5.11057 5.16947 5.17449 5.22066 5.25054 5.28408 5.30280 5.45015 5.50752 5.77104 5.86616 5.97715 6.20550 6.47111 6.57392 6.73155 6.98080 7.12310 7.24943 8.79654 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024206 B = 0.001757 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.439059 B =15930.230148 C =16807.547650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.073 3.927 3 O -0.364 6.364 4 C 0.645 3.355 5 O -0.589 6.589 6 N -0.633 5.633 7 C 0.136 3.864 8 C -0.112 4.112 9 C -0.119 4.119 10 C 0.117 3.883 11 N -0.632 5.632 12 C 0.519 3.481 13 O -0.518 6.518 14 C 0.494 3.506 15 O -0.556 6.556 16 N -0.673 5.673 17 C 0.262 3.738 18 C -0.562 4.562 19 H 0.079 0.921 20 C 0.011 3.989 21 N -0.924 5.924 22 Si 0.982 3.018 23 H -0.259 1.259 24 H -0.276 1.276 25 H -0.277 1.277 26 C -0.109 4.109 27 C -0.101 4.101 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.435 0.565 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.432 0.568 37 H 0.413 0.587 38 H 0.008 0.992 39 H 0.006 0.994 40 H 0.271 0.729 41 H 0.168 0.832 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.097 1.196 5.569 34.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.001 4.001 3 O -0.278 6.278 4 C 0.399 3.601 5 O -0.479 6.479 6 N -0.286 5.286 7 C 0.042 3.958 8 C -0.133 4.133 9 C -0.140 4.140 10 C 0.023 3.977 11 N -0.279 5.279 12 C 0.301 3.699 13 O -0.393 6.393 14 C 0.274 3.726 15 O -0.436 6.436 16 N -0.323 5.323 17 C 0.140 3.860 18 C -0.600 4.600 19 H 0.097 0.903 20 C -0.189 4.189 21 N -0.563 5.563 22 Si 0.806 3.194 23 H -0.183 1.183 24 H -0.202 1.202 25 H -0.203 1.203 26 C -0.129 4.129 27 C -0.121 4.121 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.275 0.725 34 H 0.144 0.856 35 H 0.135 0.865 36 H 0.272 0.728 37 H 0.249 0.751 38 H 0.026 0.974 39 H 0.024 0.976 40 H 0.080 0.920 41 H 0.185 0.815 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -33.627 0.659 5.619 34.100 hybrid contribution 0.865 -0.277 -0.661 1.123 sum -32.762 0.382 4.958 33.137 Atomic orbital electron populations 1.21851 0.89940 1.04578 1.03917 1.23299 0.96714 0.77317 1.02817 1.86262 1.20181 1.34980 1.86349 1.18276 0.81811 0.84171 0.75824 1.91027 1.60368 1.40859 1.55600 1.41761 1.05781 1.06458 1.74630 1.17584 0.80979 0.97999 0.99242 1.21051 0.92075 1.00456 0.99692 1.20976 0.95384 0.96983 1.00671 1.18006 0.81942 0.95865 1.01876 1.43052 1.04880 1.60567 1.19395 1.20112 0.87499 0.78407 0.83928 1.90761 1.76271 1.44299 1.27973 1.20166 0.87746 0.80037 0.84641 1.90715 1.76910 1.47337 1.28600 1.46162 1.08355 1.61424 1.16323 1.18857 0.73968 0.95915 0.97234 1.21600 0.92630 1.45920 0.99847 0.90307 1.25946 0.97679 0.94579 1.00712 1.70107 1.06400 1.46897 1.32852 0.85141 0.78290 0.77907 0.78087 1.18300 1.20155 1.20272 1.21061 0.92102 0.98399 1.01364 1.21007 0.95130 0.98010 0.97951 0.90981 0.91095 0.88000 0.91335 0.91239 0.72509 0.85557 0.86515 0.72770 0.75096 0.97449 0.97631 0.92035 0.81470 0.80581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.29 71.98 0.74 -0.09 16 2 C 0.07 0.88 6.19 71.98 0.45 1.32 16 3 O -0.36 -5.62 10.27 -55.63 -0.57 -6.19 16 4 C 0.64 12.70 8.59 129.79 1.12 13.81 16 5 O -0.59 -16.01 13.59 19.78 0.27 -15.74 16 6 N -0.63 -9.14 5.35 -429.31 -2.30 -11.43 16 7 C 0.14 2.49 6.30 38.14 0.24 2.73 16 8 C -0.11 -2.82 8.69 22.38 0.19 -2.62 16 9 C -0.12 -3.30 8.65 22.39 0.19 -3.11 16 10 C 0.12 2.80 6.28 38.20 0.24 3.04 16 11 N -0.63 -16.60 5.33 -304.73 -1.62 -18.22 16 12 C 0.52 17.50 7.62 87.23 0.66 18.16 16 13 O -0.52 -19.00 14.16 -3.37 -0.05 -19.05 16 14 C 0.49 20.01 7.88 87.23 0.69 20.69 16 15 O -0.56 -24.75 16.48 -3.27 -0.05 -24.81 16 16 N -0.67 -29.68 5.54 -468.27 -2.59 -32.28 16 17 C 0.26 14.05 5.43 85.63 0.46 14.51 16 18 C -0.56 -30.65 9.28 25.60 0.24 -30.41 16 19 H 0.08 4.02 7.60 -2.91 -0.02 4.00 16 20 C 0.01 0.62 5.46 84.65 0.46 1.08 16 21 N -0.92 -54.27 13.29 21.45 0.28 -53.99 16 22 Si 0.98 42.45 29.54 68.60 2.03 44.48 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 24 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 26 C -0.11 -1.72 9.96 22.39 0.22 -1.49 16 27 C -0.10 -1.30 9.96 22.37 0.22 -1.08 16 28 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.43 2.96 8.93 -92.71 -0.83 2.13 16 34 H 0.13 3.56 6.25 -2.91 -0.02 3.54 16 35 H 0.12 3.73 6.41 -2.91 -0.02 3.71 16 36 H 0.43 9.66 8.29 -92.71 -0.77 8.89 16 37 H 0.41 16.78 7.79 -92.71 -0.72 16.06 16 38 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 41 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 42 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 Total: -1.00 -74.78 372.12 0.32 -74.46 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: -1.21 Total: 26.23 kcal Atomic # 6 Polarization: 30.42 SS G_CDS: 6.13 Total: 36.55 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -6.23 Total: -115.93 kcal Atomic # 8 Polarization: -65.39 SS G_CDS: -0.40 Total: -65.79 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -74.78 0.32 -74.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787601294.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.026 kcal (2) G-P(sol) polarization free energy of solvation -74.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds