Wall clock time and date at job start Tue Mar 31 2020 19:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00218 * 2 1 4 4 O 1.20826 * 120.00259 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99910 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.87385 * 58.98828 * 5 3 2 7 7 C 1.54317 * 109.88601 * 297.81014 * 5 3 2 8 8 C 1.55157 * 102.94558 * 218.39017 * 7 5 3 9 9 H 1.08997 * 111.00353 * 277.42841 * 8 7 5 10 10 F 1.39905 * 111.00376 * 153.61023 * 8 7 5 11 11 C 1.54692 * 101.67666 * 35.33546 * 8 7 5 12 12 N 1.47026 * 109.88087 * 180.02562 * 5 3 2 13 13 C 1.34781 * 125.64655 * 298.31924 * 12 5 3 14 14 O 1.21278 * 119.99921 * 0.02562 * 13 12 5 15 15 C 1.50706 * 119.99691 * 179.97438 * 13 12 5 16 16 C 1.50694 * 109.46682 * 180.02562 * 15 13 12 17 17 C 1.37645 * 120.12835 * 265.02017 * 16 15 13 18 18 C 1.38611 * 120.24670 * 179.97438 * 17 16 15 19 19 C 1.38652 * 120.50318 * 359.97438 * 18 17 16 20 20 C 1.37598 * 120.25270 * 0.02562 * 19 18 17 21 21 C 1.40699 * 120.12991 * 85.00652 * 16 15 13 22 22 C 1.41393 * 120.24268 * 0.03400 * 21 16 15 23 23 H 1.08002 * 120.00142 * 329.78564 * 22 21 16 24 24 C 1.39946 * 120.00246 * 149.77525 * 22 21 16 25 25 N 1.30826 * 120.00143 * 162.06914 * 24 22 21 26 26 Si 1.86801 * 119.99880 * 342.07993 * 24 22 21 27 27 H 1.48499 * 109.47304 * 95.38120 * 26 24 22 28 28 H 1.48497 * 109.47259 * 215.38631 * 26 24 22 29 29 H 1.48502 * 109.47215 * 335.38656 * 26 24 22 30 30 H 1.09004 * 109.46524 * 299.99920 * 1 2 3 31 31 H 1.08997 * 109.46685 * 59.99448 * 1 2 3 32 32 H 1.08999 * 109.47527 * 179.97438 * 1 2 3 33 33 H 1.09008 * 110.71912 * 336.75184 * 7 5 3 34 34 H 1.08994 * 110.72362 * 100.02318 * 7 5 3 35 35 H 1.08994 * 110.39131 * 204.36449 * 11 8 7 36 36 H 1.08999 * 110.23555 * 82.10996 * 11 8 7 37 37 H 1.09002 * 109.46462 * 60.00492 * 15 13 12 38 38 H 1.08996 * 109.46890 * 300.00187 * 15 13 12 39 39 H 1.08002 * 119.87259 * 0.02562 * 17 16 15 40 40 H 1.08004 * 119.74568 * 180.02562 * 18 17 16 41 41 H 1.08006 * 119.87741 * 180.28194 * 19 18 17 42 42 H 1.07991 * 120.13077 * 180.02562 * 20 19 18 43 43 H 0.96998 * 119.99896 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9644 0.7665 -0.8777 7 6 4.1254 0.6264 1.2845 8 6 5.3111 1.5559 1.6554 9 1 6.2039 1.2962 1.0866 10 9 5.5670 1.5179 3.0303 11 6 4.7696 2.9401 1.2269 12 7 3.9934 2.6816 0.0011 13 6 3.7247 3.5844 -0.9630 14 8 3.0779 3.2584 -1.9357 15 6 4.2271 4.9992 -0.8316 16 6 3.7935 5.7996 -2.0324 17 6 4.6411 5.9475 -3.1069 18 6 4.2446 6.6829 -4.2129 19 6 2.9922 7.2767 -4.2512 20 6 2.1285 7.1422 -3.1886 21 6 2.5206 6.3985 -2.0599 22 6 1.6416 6.2538 -0.9619 23 1 1.6804 5.3627 -0.3529 24 6 0.7216 7.2653 -0.6640 25 7 -0.3080 7.0085 0.1013 26 14 0.9633 8.9822 -1.3593 27 1 0.1699 9.1275 -2.6062 28 1 0.5106 9.9874 -0.3645 29 1 2.4017 9.1964 -1.6602 30 1 -0.3632 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.3744 0.6254 2.0746 34 1 4.4769 -0.3857 1.0839 35 1 5.5937 3.6221 1.0177 36 1 4.1250 3.3500 2.0045 37 1 5.3154 4.9940 -0.7715 38 1 3.8153 5.4484 0.0721 39 1 5.6184 5.4882 -3.0883 40 1 4.9159 6.7933 -5.0517 41 1 2.6919 7.8437 -5.1200 42 1 1.1534 7.6052 -3.2206 43 1 -0.9459 7.7096 0.3075 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794216716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:45 Heat of formation + Delta-G solvation = -161.554456 kcal Electronic energy + Delta-G solvation = -29811.422425 eV Core-core repulsion = 25542.210108 eV Total energy + Delta-G solvation = -4269.212317 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.66398 -42.06001 -40.73090 -39.52814 -38.13724 -37.47752 -35.49867 -33.78758 -32.47156 -32.13473 -30.92801 -28.73919 -28.39168 -26.76742 -25.22565 -23.29254 -23.01550 -22.56153 -21.44708 -20.25091 -19.26861 -19.11290 -18.38770 -17.88755 -17.67503 -17.47470 -17.19810 -16.53487 -16.31852 -16.14349 -15.72777 -15.67453 -15.53801 -15.24347 -14.80547 -14.58086 -14.39853 -14.24317 -14.01718 -13.91091 -13.71922 -13.64571 -13.18195 -13.07711 -12.89676 -12.70303 -12.67255 -12.51579 -12.23869 -12.00355 -11.91364 -11.85050 -11.55303 -11.47494 -11.38234 -10.99345 -10.91799 -9.93327 -9.40480 -9.30641 -8.86925 -6.46131 0.76217 0.89677 1.08065 1.23058 1.28404 1.38559 1.46342 1.84841 1.94502 2.11446 2.63019 3.05801 3.12110 3.40782 3.51127 3.72908 3.82960 3.95376 4.07127 4.18775 4.23168 4.24961 4.27007 4.34690 4.44257 4.47348 4.57759 4.58703 4.64301 4.69981 4.73183 4.92208 4.94175 5.03314 5.10998 5.15854 5.27974 5.36842 5.66149 5.86123 5.95487 6.05362 6.29217 6.30002 6.46989 6.65207 6.80169 6.89299 7.21671 8.21868 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011753 B = 0.004242 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.706672 B = 6598.928820 C = 7213.618208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.354 6.354 3 C 0.435 3.565 4 O -0.526 6.526 5 C 0.146 3.854 6 H 0.137 0.863 7 C -0.131 4.131 8 C 0.097 3.903 9 H 0.152 0.848 10 F -0.203 7.203 11 C 0.066 3.934 12 N -0.613 5.613 13 C 0.542 3.458 14 O -0.559 6.559 15 C -0.065 4.065 16 C -0.176 4.176 17 C -0.074 4.074 18 C -0.228 4.228 19 C -0.090 4.090 20 C -0.258 4.258 21 C 0.082 3.918 22 C -0.467 4.467 23 H 0.048 0.952 24 C 0.042 3.958 25 N -0.857 5.857 26 Si 0.969 3.031 27 H -0.268 1.268 28 H -0.277 1.277 29 H -0.247 1.247 30 H 0.054 0.946 31 H 0.041 0.959 32 H 0.147 0.853 33 H 0.084 0.916 34 H 0.150 0.850 35 H 0.124 0.876 36 H 0.065 0.935 37 H 0.130 0.870 38 H 0.086 0.914 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.122 0.878 42 H 0.087 0.913 43 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.267 -13.183 3.841 19.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.270 6.270 3 C 0.276 3.724 4 O -0.413 6.413 5 C 0.041 3.959 6 H 0.154 0.846 7 C -0.169 4.169 8 C 0.060 3.940 9 H 0.169 0.831 10 F -0.183 7.183 11 C -0.057 4.057 12 N -0.350 5.350 13 C 0.333 3.667 14 O -0.435 6.435 15 C -0.105 4.105 16 C -0.178 4.178 17 C -0.091 4.091 18 C -0.247 4.247 19 C -0.108 4.108 20 C -0.277 4.277 21 C 0.080 3.920 22 C -0.497 4.497 23 H 0.066 0.934 24 C -0.171 4.171 25 N -0.484 5.484 26 Si 0.793 3.207 27 H -0.194 1.194 28 H -0.203 1.203 29 H -0.170 1.170 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.165 0.835 33 H 0.102 0.898 34 H 0.168 0.832 35 H 0.142 0.858 36 H 0.083 0.917 37 H 0.148 0.852 38 H 0.104 0.896 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.140 0.860 42 H 0.105 0.895 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.417 -12.956 3.462 18.276 hybrid contribution -1.669 0.902 0.058 1.898 sum 10.749 -12.054 3.520 16.529 Atomic orbital electron populations 1.23474 0.75410 1.05772 1.01508 1.86436 1.24366 1.32087 1.84113 1.24892 0.93748 0.81596 0.72136 1.90861 1.67714 1.37957 1.44726 1.21389 0.85356 0.84947 1.04222 0.84592 1.23283 0.97977 1.02083 0.93566 1.22693 1.00131 0.93579 0.77572 0.83054 1.92846 1.95458 1.97046 1.32980 1.23100 0.96729 0.99587 0.86251 1.48333 1.54834 1.09571 1.22264 1.20919 0.77997 0.87164 0.80625 1.90667 1.39522 1.80241 1.33076 1.20311 1.02649 0.88920 0.98584 1.19545 0.94459 1.06211 0.97554 1.20912 0.98816 0.96943 0.92476 1.20896 0.97519 1.06034 1.00227 1.20988 0.94445 0.98470 0.96930 1.21118 0.99997 1.09998 0.96577 1.17734 0.91686 0.90738 0.91844 1.19337 1.14421 1.03835 1.12142 0.93380 1.26908 0.91917 1.04811 0.93456 1.69797 1.09667 1.36645 1.32293 0.85443 0.81062 0.76645 0.77590 1.19391 1.20320 1.16991 0.92736 0.94004 0.83545 0.89759 0.83164 0.85760 0.91702 0.85199 0.89600 0.84886 0.85023 0.86026 0.89483 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.56 113.37 1.20 2.01 16 2 O -0.35 -10.11 10.54 -51.40 -0.54 -10.65 16 3 C 0.43 15.31 6.76 71.24 0.48 15.79 16 4 O -0.53 -25.50 14.82 26.89 0.40 -25.10 16 5 C 0.15 3.75 3.37 44.59 0.15 3.90 16 6 H 0.14 2.94 8.14 -2.39 -0.02 2.92 16 7 C -0.13 -1.98 6.26 31.78 0.20 -1.78 16 8 C 0.10 1.30 4.84 31.91 0.15 1.46 16 9 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 10 F -0.20 -3.44 17.24 44.97 0.78 -2.67 16 11 C 0.07 1.38 6.49 86.79 0.56 1.95 16 12 N -0.61 -18.68 2.84 -792.74 -2.25 -20.93 16 13 C 0.54 22.23 6.63 87.66 0.58 22.82 16 14 O -0.56 -28.71 15.32 10.19 0.16 -28.56 16 15 C -0.07 -2.54 4.20 29.10 0.12 -2.42 16 16 C -0.18 -8.21 4.43 -19.41 -0.09 -8.30 16 17 C -0.07 -2.95 9.66 22.22 0.21 -2.74 16 18 C -0.23 -9.04 10.05 22.46 0.23 -8.82 16 19 C -0.09 -3.97 10.02 22.22 0.22 -3.74 16 20 C -0.26 -13.35 7.17 22.73 0.16 -13.19 16 21 C 0.08 4.51 5.10 -21.29 -0.11 4.41 16 22 C -0.47 -28.33 8.55 23.46 0.20 -28.13 16 23 H 0.05 3.25 7.00 -2.91 -0.02 3.23 16 24 C 0.04 2.45 5.41 85.26 0.46 2.91 16 25 N -0.86 -51.42 13.93 21.83 0.30 -51.12 16 26 Si 0.97 46.17 24.52 68.60 1.68 47.85 16 27 H -0.27 -12.41 6.71 99.48 0.67 -11.74 16 28 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 29 H -0.25 -11.67 6.86 99.48 0.68 -10.99 16 30 H 0.05 1.47 8.13 -2.39 -0.02 1.45 16 31 H 0.04 1.25 8.13 -2.39 -0.02 1.23 16 32 H 0.15 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.08 1.50 7.84 -2.38 -0.02 1.48 16 34 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.12 1.93 7.47 -2.39 -0.02 1.91 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.13 3.56 7.75 -2.39 -0.02 3.55 16 38 H 0.09 3.62 7.13 -2.39 -0.02 3.60 16 39 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 40 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 41 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 42 H 0.09 4.59 4.77 -2.92 -0.01 4.58 16 43 H 0.29 15.62 8.30 -92.71 -0.77 14.85 16 Total: -1.00 -88.12 360.82 6.24 -81.88 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.98 Total: 23.18 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 4.74 Total: -13.88 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: -1.95 Total: -72.05 kcal Atomic # 8 Polarization: -64.32 SS G_CDS: 0.01 Total: -64.31 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.78 Total: -2.67 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.68 Total: 47.85 kcal Total: -88.12 6.24 -81.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794216716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.679 kcal (2) G-P(sol) polarization free energy of solvation -88.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds