Wall clock time and date at job start Tue Mar 31 2020 18:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 109.46887 * 2 1 4 4 C 1.46497 * 120.00192 * 269.99879 * 3 2 1 5 5 C 1.50698 * 109.47319 * 270.00817 * 4 3 2 6 6 H 1.08000 * 119.99954 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00025 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99891 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46826 * 89.99733 * 9 7 5 11 11 H 1.48501 * 109.46924 * 209.99735 * 9 7 5 12 12 H 1.48498 * 109.47187 * 329.99580 * 9 7 5 13 13 C 1.34778 * 119.99939 * 90.00563 * 3 2 1 14 14 O 1.21274 * 119.99895 * 179.97438 * 13 3 2 15 15 C 1.50696 * 119.99672 * 359.97438 * 13 3 2 16 16 O 1.45206 * 109.47051 * 180.02562 * 15 13 3 17 17 C 1.34228 * 117.00222 * 180.02562 * 16 15 13 18 18 O 1.20828 * 120.00116 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00196 * 179.97438 * 17 16 15 20 20 H 1.09002 * 112.88024 * 51.66016 * 19 17 16 21 21 C 1.52255 * 113.69362 * 182.77924 * 19 17 16 22 22 C 1.50570 * 87.23477 * 114.77444 * 21 19 17 23 23 C 1.38816 * 147.26895 * 179.79182 * 22 21 19 24 24 C 1.38026 * 120.12757 * 180.02562 * 23 22 21 25 25 C 1.38459 * 119.95368 * 359.97438 * 24 23 22 26 26 F 1.35103 * 120.03777 * 180.02562 * 25 24 23 27 27 C 1.38287 * 119.92867 * 0.02562 * 25 24 23 28 28 C 1.37737 * 92.76358 * 359.81575 * 22 21 19 29 29 H 1.08994 * 109.46921 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46630 * 300.00033 * 1 2 3 31 31 H 1.08997 * 109.47369 * 59.99562 * 1 2 3 32 32 H 1.08996 * 109.46705 * 240.00265 * 2 1 3 33 33 H 1.08997 * 109.47369 * 120.00438 * 2 1 3 34 34 H 1.09006 * 109.47209 * 30.00109 * 4 3 2 35 35 H 1.08994 * 109.47324 * 150.00408 * 4 3 2 36 36 H 0.97002 * 119.99743 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47755 * 60.00056 * 15 13 3 38 38 H 1.09008 * 109.47479 * 300.00112 * 15 13 3 39 39 H 1.08997 * 113.75956 * 0.16122 * 21 19 17 40 40 H 1.09003 * 113.42026 * 229.33275 * 21 19 17 41 41 H 1.08007 * 119.94064 * 0.02614 * 23 22 21 42 42 H 1.07998 * 120.02496 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.96681 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0959 7 6 4.1493 2.3906 -2.8775 8 7 3.3493 3.1267 -3.6175 9 14 5.9137 2.0975 -3.4165 10 1 5.9774 0.8768 -4.2598 11 1 6.3927 3.2652 -4.1989 12 1 6.7737 1.9176 -2.2193 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9915 1.3063 2.4722 16 8 2.3056 2.1960 3.5760 17 6 2.1347 1.7122 4.8163 18 8 1.7354 0.5829 4.9746 19 6 2.4408 2.5776 6.0115 20 1 1.9489 3.5494 5.9682 21 6 2.2607 1.8651 7.3449 22 6 3.7452 2.0186 7.5444 23 6 4.8430 1.7920 8.3633 24 6 6.0988 2.2076 7.9691 25 6 6.2645 2.8511 6.7545 26 9 7.4930 3.2581 6.3667 27 6 5.1710 3.0769 5.9385 28 6 3.9088 2.6592 6.3361 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.5817 1.6878 -2.0284 35 1 2.0956 3.1411 -1.1383 36 1 3.6756 3.5178 -4.4430 37 1 2.6213 0.4185 2.5302 38 1 0.9433 1.0124 2.5299 39 1 1.9384 0.8283 7.2489 40 1 1.6638 2.4301 8.0609 41 1 4.7143 1.2897 9.3107 42 1 6.9517 2.0308 8.6077 43 1 5.2994 3.5792 4.9911 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796063280.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:42 Heat of formation + Delta-G solvation = -95.892501 kcal Electronic energy + Delta-G solvation = -28111.500784 eV Core-core repulsion = 23845.135783 eV Total energy + Delta-G solvation = -4266.365001 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.10998 -41.61789 -40.04583 -38.90494 -36.62442 -35.45425 -35.32209 -32.86262 -31.19802 -30.21821 -29.48008 -27.99575 -26.70161 -25.55861 -23.22728 -23.07990 -22.52573 -21.57344 -20.26228 -18.72635 -18.25713 -17.66692 -16.99698 -16.79063 -16.59300 -16.31059 -16.09501 -15.77002 -15.48266 -15.29684 -14.85354 -14.39444 -14.28308 -13.92813 -13.65040 -13.51066 -13.43083 -12.98769 -12.84671 -12.56645 -12.25107 -12.16032 -12.11604 -12.07614 -11.68387 -11.66138 -11.25823 -11.13387 -10.97068 -10.91399 -10.71641 -10.65031 -10.54882 -10.16423 -9.68210 -9.33386 -9.03648 -8.83893 -8.46456 -7.78493 -6.07601 -4.12548 0.70131 0.83407 1.93801 2.33151 3.18129 3.21316 3.29114 3.36137 3.41194 3.52068 3.78540 3.86445 3.95225 4.17545 4.42088 4.62270 4.64789 4.78496 4.82406 4.91268 5.08768 5.15994 5.18015 5.26525 5.27274 5.33164 5.35666 5.53318 5.55394 5.62710 5.69907 5.77401 5.81845 5.96307 6.16254 6.19993 6.25140 6.41724 6.51288 6.96472 7.36908 7.43663 7.55616 7.88401 8.18245 8.26301 8.81621 8.96553 9.52687 11.00565 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011382 B = 0.002988 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.541231 B = 9368.929542 C =11284.458888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.518 6.518 15 C 0.049 3.951 16 O -0.323 6.323 17 C 0.479 3.521 18 O -0.503 6.503 19 C -0.039 4.039 20 H 0.140 0.860 21 C -0.056 4.056 22 C -0.128 4.128 23 C -0.068 4.068 24 C -0.142 4.142 25 C 0.100 3.900 26 F -0.134 7.134 27 C -0.112 4.112 28 C -0.097 4.097 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.045 0.955 36 H 0.264 0.736 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.133 0.867 42 H 0.141 0.859 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 -4.992 23.665 24.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.394 6.394 15 C -0.029 4.029 16 O -0.237 6.237 17 C 0.321 3.679 18 O -0.391 6.391 19 C -0.057 4.057 20 H 0.158 0.842 21 C -0.092 4.092 22 C -0.128 4.128 23 C -0.086 4.086 24 C -0.161 4.161 25 C 0.081 3.919 26 F -0.113 7.113 27 C -0.131 4.131 28 C -0.098 4.098 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.132 0.868 40 H 0.125 0.875 41 H 0.151 0.849 42 H 0.159 0.841 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.027 -4.582 23.450 24.084 hybrid contribution 1.250 -0.229 -0.680 1.441 sum -1.777 -4.812 22.770 23.340 Atomic orbital electron populations 1.22233 0.96490 1.01712 1.02422 1.21515 0.93784 0.83944 1.03045 1.48215 1.63785 1.13402 1.07127 1.19334 0.96491 0.93707 0.77526 1.21426 0.96856 1.32132 1.06392 0.92398 1.24927 0.97925 0.94813 0.96345 1.69927 1.35736 1.33273 1.14344 0.86490 0.84579 0.77710 0.78627 1.20602 1.21025 1.19858 1.19683 0.79787 0.87162 0.84266 1.90718 1.44444 1.17500 1.86710 1.23028 1.02784 0.92659 0.84389 1.86567 1.78140 1.44840 1.14151 1.23014 0.74061 0.86447 0.84413 1.90658 1.42412 1.19464 1.86586 1.20842 0.92945 1.00767 0.91189 0.84206 1.21503 0.91226 1.03421 0.93067 1.21839 0.96393 0.98908 0.95668 1.20200 0.89842 0.99046 0.99538 1.21048 0.98550 1.00618 0.95861 1.17336 0.80050 0.99877 0.94610 1.91536 1.40132 1.88469 1.91142 1.20492 0.90101 1.01532 1.00989 1.20957 0.92841 0.99352 0.96615 0.91873 0.93146 0.91752 0.89381 0.91781 0.94605 0.93687 0.92650 0.88625 0.88562 0.86808 0.87472 0.84876 0.84075 0.84001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.10 1.58 5.93 -4.04 -0.02 1.55 16 3 N -0.59 -12.31 2.46 -175.06 -0.43 -12.74 16 4 C 0.25 6.38 5.16 -5.20 -0.03 6.35 16 5 C -0.53 -14.90 9.39 -34.44 -0.32 -15.23 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 9 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.51 10.64 7.75 -10.99 -0.09 10.55 16 14 O -0.52 -13.26 16.08 -14.10 -0.23 -13.49 16 15 C 0.05 0.78 4.50 36.00 0.16 0.94 16 16 O -0.32 -5.26 9.76 -45.90 -0.45 -5.71 16 17 C 0.48 6.45 7.48 36.00 0.27 6.72 16 18 O -0.50 -7.34 15.46 -18.75 -0.29 -7.63 16 19 C -0.04 -0.39 4.39 -93.66 -0.41 -0.80 16 20 H 0.14 1.07 8.14 -51.93 -0.42 0.65 16 21 C -0.06 -0.43 7.68 -28.62 -0.22 -0.65 16 22 C -0.13 -1.18 7.42 -104.94 -0.78 -1.96 16 23 C -0.07 -0.55 10.05 -39.45 -0.40 -0.95 16 24 C -0.14 -1.25 10.02 -39.58 -0.40 -1.65 16 25 C 0.10 1.13 7.30 -39.48 -0.29 0.84 16 26 F -0.13 -1.65 17.27 2.25 0.04 -1.61 16 27 C -0.11 -1.35 10.04 -39.37 -0.40 -1.74 16 28 C -0.10 -1.08 6.90 -104.96 -0.72 -1.80 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.62 7.22 -51.93 -0.37 0.25 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 33 H 0.06 0.84 6.44 -51.93 -0.33 0.51 16 34 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 35 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.10 1.41 7.39 -51.93 -0.38 1.02 16 38 H 0.10 1.31 7.18 -51.92 -0.37 0.94 16 39 H 0.11 0.94 7.04 -51.93 -0.37 0.57 16 40 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 42 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 376.57 15.07 5.67 5.67 Total: -1.00 -34.84 376.57 -8.88 -43.72 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -5.56 Total: -1.44 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -3.36 Total: 2.03 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.31 Total: -38.38 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.96 Total: -26.82 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.84 -8.88 -43.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796063280.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.177 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds