Wall clock time and date at job start Tue Mar 31 2020 18:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47264 * 2 1 4 4 O 1.45201 * 109.46929 * 239.99964 * 2 1 3 5 5 C 1.34234 * 116.99843 * 90.00465 * 4 2 1 6 6 O 1.20826 * 119.99737 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99897 * 180.02562 * 5 4 2 8 8 H 1.09001 * 112.50721 * 50.31653 * 7 5 4 9 9 C 1.52879 * 113.16556 * 180.22542 * 7 5 4 10 10 C 1.51438 * 84.73408 * 115.22203 * 9 7 5 11 11 C 1.38968 * 145.49110 * 180.02562 * 10 9 7 12 12 C 1.37939 * 120.35455 * 179.97438 * 11 10 9 13 13 C 1.38459 * 120.15224 * 359.97290 * 12 11 10 14 14 F 1.35098 * 120.15621 * 180.02562 * 13 12 11 15 15 C 1.38408 * 119.69596 * 0.03436 * 13 12 11 16 16 C 1.38203 * 120.09545 * 359.95769 * 15 13 12 17 17 C 1.50702 * 109.47013 * 120.00193 * 2 1 3 18 18 O 1.21284 * 119.99945 * 106.65331 * 17 2 1 19 19 N 1.34778 * 119.99937 * 286.65829 * 17 2 1 20 20 C 1.46498 * 119.99982 * 5.11307 * 19 17 2 21 21 C 1.46499 * 119.99965 * 185.12109 * 19 17 2 22 22 C 1.50695 * 109.47248 * 269.99696 * 21 19 17 23 23 H 1.08000 * 119.99936 * 0.02562 * 22 21 19 24 24 C 1.37876 * 120.00470 * 179.97438 * 22 21 19 25 25 N 1.31515 * 119.99532 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00360 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47042 * 270.00091 * 26 24 22 28 28 H 1.48503 * 109.46846 * 29.99959 * 26 24 22 29 29 H 1.48496 * 109.47111 * 150.00321 * 26 24 22 30 30 H 1.09002 * 109.47038 * 290.07100 * 1 2 3 31 31 H 1.09003 * 109.47068 * 50.06207 * 1 2 3 32 32 H 1.08999 * 109.47470 * 170.06454 * 1 2 3 33 33 H 1.08997 * 113.98921 * 229.16550 * 9 7 5 34 34 H 1.08996 * 113.98985 * 1.27721 * 9 7 5 35 35 H 1.08001 * 119.82834 * 359.96590 * 11 10 9 36 36 H 1.08006 * 119.92240 * 179.97438 * 12 11 10 37 37 H 1.07991 * 119.95087 * 180.02562 * 15 13 12 38 38 H 1.08999 * 109.47677 * 265.08569 * 20 19 17 39 39 H 1.08999 * 109.47105 * 25.09416 * 20 19 17 40 40 H 1.09002 * 109.46826 * 145.08141 * 20 19 17 41 41 H 1.08996 * 109.47443 * 149.99669 * 21 19 17 42 42 H 1.09001 * 109.47006 * 29.99766 * 21 19 17 43 43 H 0.97001 * 119.99977 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2172 0.0640 -2.2811 6 8 1.9975 1.2518 -2.2505 7 6 2.7182 -0.5772 -3.5495 8 1 2.1372 -1.4555 -3.8307 9 6 2.8993 0.4181 -4.6957 10 6 4.3691 0.0732 -4.5777 11 6 5.6447 0.3109 -5.0753 12 6 6.7347 -0.3441 -4.5408 13 6 6.5648 -1.2442 -3.5025 14 9 7.6323 -1.8854 -2.9786 15 6 5.2962 -1.4842 -3.0038 16 6 4.2050 -0.8271 -3.5400 17 6 2.0323 -0.7105 1.2305 18 8 2.5183 -1.8176 1.1355 19 7 1.9415 -0.1155 2.4364 20 6 1.2544 1.1716 2.5683 21 6 2.5299 -0.7559 3.6153 22 6 1.5073 -1.6541 4.2621 23 1 0.5180 -1.7396 3.8373 24 6 1.8347 -2.3674 5.3957 25 7 3.0398 -2.2643 5.9121 26 14 0.5672 -3.4812 6.1971 27 1 -0.2024 -2.7098 7.2059 28 1 -0.3593 -4.0028 5.1604 29 1 1.2558 -4.6165 6.8620 30 1 -0.3633 0.3527 0.9653 31 1 -0.3633 0.6597 -0.7880 32 1 -0.3634 -1.0122 -0.1773 33 1 2.4438 0.1013 -5.6339 34 1 2.6631 1.4484 -4.4295 35 1 5.7835 1.0120 -5.8849 36 1 7.7229 -0.1545 -4.9332 37 1 5.1590 -2.1850 -2.1937 38 1 1.9834 1.9801 2.5127 39 1 0.5289 1.2805 1.7622 40 1 0.7396 1.2120 3.5282 41 1 2.8431 0.0089 4.3260 42 1 3.3943 -1.3476 3.3139 43 1 3.2701 -2.7658 6.7099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796069344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:10 Heat of formation + Delta-G solvation = -87.222742 kcal Electronic energy + Delta-G solvation = -28470.840421 eV Core-core repulsion = 24204.851369 eV Total energy + Delta-G solvation = -4265.989052 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.08024 -41.56801 -40.13973 -38.85971 -36.62420 -35.36135 -34.92097 -32.89675 -31.68648 -31.15487 -28.08819 -27.70745 -26.30892 -25.93160 -24.30579 -23.21908 -22.35089 -21.42791 -20.20210 -18.91227 -18.30379 -17.56318 -16.95905 -16.76539 -16.56236 -16.13518 -15.86241 -15.72704 -15.47750 -15.24416 -14.64753 -14.52845 -14.29806 -13.89375 -13.79817 -13.50685 -13.19667 -12.99977 -12.73305 -12.48651 -12.21331 -12.17476 -12.11104 -12.09443 -11.79996 -11.65332 -11.38244 -11.21714 -11.07352 -10.90489 -10.77064 -10.61486 -10.57337 -10.17460 -9.66314 -9.31777 -8.93005 -8.79617 -8.45864 -7.74214 -6.06556 -4.11472 0.72503 0.86901 1.96096 2.36422 3.20533 3.22302 3.29165 3.36158 3.40902 3.48741 3.81593 3.88497 3.96802 4.20073 4.42337 4.56238 4.67916 4.77168 4.81686 4.91732 4.97389 5.07546 5.18355 5.27552 5.28103 5.37484 5.40142 5.54533 5.59976 5.64986 5.68340 5.81371 5.85707 5.86258 6.03700 6.22000 6.22789 6.33060 6.54288 6.96373 7.36497 7.43891 7.58525 7.89086 8.18841 8.27263 8.82908 8.97438 9.53433 11.01703 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014249 B = 0.002853 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.613593 B = 9812.615102 C =11072.360461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.070 3.930 3 H 0.104 0.896 4 O -0.319 6.319 5 C 0.476 3.524 6 O -0.503 6.503 7 C -0.036 4.036 8 H 0.136 0.864 9 C -0.056 4.056 10 C -0.129 4.129 11 C -0.072 4.072 12 C -0.143 4.143 13 C 0.102 3.898 14 F -0.133 7.133 15 C -0.108 4.108 16 C -0.098 4.098 17 C 0.507 3.493 18 O -0.516 6.516 19 N -0.596 5.596 20 C 0.066 3.934 21 C 0.247 3.753 22 C -0.527 4.527 23 H 0.058 0.942 24 C 0.061 3.939 25 N -0.895 5.895 26 Si 0.899 3.101 27 H -0.280 1.280 28 H -0.274 1.274 29 H -0.285 1.285 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.132 0.868 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.048 0.952 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.036 0.964 42 H 0.043 0.957 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.163 8.286 -23.249 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.011 3.989 3 H 0.121 0.879 4 O -0.234 6.234 5 C 0.318 3.682 6 O -0.391 6.391 7 C -0.054 4.054 8 H 0.154 0.846 9 C -0.092 4.092 10 C -0.129 4.129 11 C -0.090 4.090 12 C -0.162 4.162 13 C 0.083 3.917 14 F -0.112 7.112 15 C -0.127 4.127 16 C -0.098 4.098 17 C 0.291 3.709 18 O -0.391 6.391 19 N -0.330 5.330 20 C -0.078 4.078 21 C 0.129 3.871 22 C -0.566 4.566 23 H 0.076 0.924 24 C -0.141 4.141 25 N -0.533 5.533 26 Si 0.727 3.273 27 H -0.206 1.206 28 H -0.198 1.198 29 H -0.211 1.211 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.161 0.839 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.538 7.941 -23.043 24.379 hybrid contribution -0.427 -0.673 0.874 1.183 sum 0.111 7.268 -22.169 23.331 Atomic orbital electron populations 1.22332 0.92191 1.04173 1.04194 1.22702 0.95997 0.97416 0.82760 0.87860 1.86639 1.76058 1.41242 1.19474 1.23132 0.73975 0.85741 0.85330 1.90637 1.48117 1.16244 1.84111 1.21037 0.92712 1.00803 0.90890 0.84624 1.21816 0.89412 1.00901 0.97069 1.22348 0.95225 0.97952 0.97419 1.20315 0.89920 0.99073 0.99687 1.21015 1.00332 0.97732 0.97111 1.17332 0.83314 0.95457 0.95622 1.91536 1.53953 1.80038 1.85629 1.20251 0.89501 1.01502 1.01399 1.20793 0.93698 0.97759 0.97568 1.19767 0.80816 0.86551 0.83787 1.90712 1.44331 1.18535 1.85563 1.48078 1.55365 1.21133 1.08414 1.21999 0.96899 0.85467 1.03417 1.19341 0.94516 0.93008 0.80247 1.21404 0.98717 1.26213 1.10223 0.92355 1.24941 0.95556 0.96689 0.96935 1.69932 1.19011 1.42195 1.22202 0.86477 0.81253 0.80292 0.79294 1.20634 1.19846 1.21058 0.88933 0.91124 0.90538 0.87244 0.86572 0.85015 0.84162 0.83938 0.93339 0.91427 0.90338 0.94619 0.93850 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 9.09 37.16 0.34 -1.96 16 2 C 0.07 1.15 2.16 -27.88 -0.06 1.09 16 3 H 0.10 1.58 6.74 -51.93 -0.35 1.23 16 4 O -0.32 -5.25 9.45 -45.81 -0.43 -5.69 16 5 C 0.48 6.50 7.43 36.01 0.27 6.77 16 6 O -0.50 -7.39 14.88 -18.75 -0.28 -7.67 16 7 C -0.04 -0.36 4.26 -96.58 -0.41 -0.77 16 8 H 0.14 1.04 8.14 -51.93 -0.42 0.62 16 9 C -0.06 -0.43 7.91 -27.58 -0.22 -0.64 16 10 C -0.13 -1.23 7.32 -107.57 -0.79 -2.02 16 11 C -0.07 -0.60 10.04 -39.42 -0.40 -1.00 16 12 C -0.14 -1.32 10.01 -39.61 -0.40 -1.71 16 13 C 0.10 1.19 7.31 -39.44 -0.29 0.90 16 14 F -0.13 -1.69 17.27 2.25 0.04 -1.65 16 15 C -0.11 -1.35 10.02 -39.53 -0.40 -1.74 16 16 C -0.10 -1.12 7.05 -104.56 -0.74 -1.86 16 17 C 0.51 10.88 7.00 -10.98 -0.08 10.80 16 18 O -0.52 -13.44 16.19 -13.72 -0.22 -13.66 16 19 N -0.60 -12.71 2.86 -182.96 -0.52 -13.24 16 20 C 0.07 1.03 9.86 59.85 0.59 1.62 16 21 C 0.25 6.48 5.14 -5.20 -0.03 6.45 16 22 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 23 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 24 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 25 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 26 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 29 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 30 H 0.09 1.17 5.50 -51.93 -0.29 0.88 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.12 0.96 7.02 -51.93 -0.36 0.60 16 35 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 36 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 37 H 0.14 1.86 8.06 -52.49 -0.42 1.43 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.86 4.11 -51.93 -0.21 0.65 16 40 H 0.08 1.24 8.11 -51.93 -0.42 0.82 16 41 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 42 H 0.04 1.28 7.50 -51.93 -0.39 0.89 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 372.29 15.07 5.61 5.61 Total: -1.00 -35.25 372.29 -8.48 -43.73 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.37 Total: -0.76 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -3.02 Total: 2.37 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.21 Total: -39.08 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.93 Total: -27.02 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.25 -8.48 -43.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796069344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.491 kcal (2) G-P(sol) polarization free energy of solvation -35.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds