Wall clock time and date at job start Tue Mar 31 2020 18:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47264 * 2 1 4 4 O 1.45201 * 109.46929 * 239.99964 * 2 1 3 5 5 C 1.34234 * 116.99843 * 90.00465 * 4 2 1 6 6 O 1.20826 * 119.99737 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99897 * 180.02562 * 5 4 2 8 8 H 1.09001 * 112.50721 * 50.31653 * 7 5 4 9 9 C 1.52879 * 113.16556 * 180.22542 * 7 5 4 10 10 C 1.51438 * 84.73408 * 115.22203 * 9 7 5 11 11 C 1.38968 * 145.49110 * 180.02562 * 10 9 7 12 12 C 1.37939 * 120.35455 * 179.97438 * 11 10 9 13 13 C 1.38459 * 120.15224 * 359.97290 * 12 11 10 14 14 F 1.35098 * 120.15621 * 180.02562 * 13 12 11 15 15 C 1.38408 * 119.69596 * 0.03436 * 13 12 11 16 16 C 1.38203 * 120.09545 * 359.95769 * 15 13 12 17 17 C 1.50702 * 109.47013 * 120.00193 * 2 1 3 18 18 O 1.21284 * 119.99945 * 106.65331 * 17 2 1 19 19 N 1.34778 * 119.99937 * 286.65829 * 17 2 1 20 20 C 1.46498 * 119.99982 * 5.11307 * 19 17 2 21 21 C 1.46499 * 119.99965 * 185.12109 * 19 17 2 22 22 C 1.50695 * 109.47248 * 269.99696 * 21 19 17 23 23 H 1.08000 * 119.99936 * 0.02562 * 22 21 19 24 24 C 1.37876 * 120.00470 * 179.97438 * 22 21 19 25 25 N 1.31515 * 119.99532 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00360 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47042 * 270.00091 * 26 24 22 28 28 H 1.48503 * 109.46846 * 29.99959 * 26 24 22 29 29 H 1.48496 * 109.47111 * 150.00321 * 26 24 22 30 30 H 1.09002 * 109.47038 * 290.07100 * 1 2 3 31 31 H 1.09003 * 109.47068 * 50.06207 * 1 2 3 32 32 H 1.08999 * 109.47470 * 170.06454 * 1 2 3 33 33 H 1.08997 * 113.98921 * 229.16550 * 9 7 5 34 34 H 1.08996 * 113.98985 * 1.27721 * 9 7 5 35 35 H 1.08001 * 119.82834 * 359.96590 * 11 10 9 36 36 H 1.08006 * 119.92240 * 179.97438 * 12 11 10 37 37 H 1.07991 * 119.95087 * 180.02562 * 15 13 12 38 38 H 1.08999 * 109.47677 * 265.08569 * 20 19 17 39 39 H 1.08999 * 109.47105 * 25.09416 * 20 19 17 40 40 H 1.09002 * 109.46826 * 145.08141 * 20 19 17 41 41 H 1.08996 * 109.47443 * 149.99669 * 21 19 17 42 42 H 1.09001 * 109.47006 * 29.99766 * 21 19 17 43 43 H 0.97001 * 119.99977 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2172 0.0640 -2.2811 6 8 1.9975 1.2518 -2.2505 7 6 2.7182 -0.5772 -3.5495 8 1 2.1372 -1.4555 -3.8307 9 6 2.8993 0.4181 -4.6957 10 6 4.3691 0.0732 -4.5777 11 6 5.6447 0.3109 -5.0753 12 6 6.7347 -0.3441 -4.5408 13 6 6.5648 -1.2442 -3.5025 14 9 7.6323 -1.8854 -2.9786 15 6 5.2962 -1.4842 -3.0038 16 6 4.2050 -0.8271 -3.5400 17 6 2.0323 -0.7105 1.2305 18 8 2.5183 -1.8176 1.1355 19 7 1.9415 -0.1155 2.4364 20 6 1.2544 1.1716 2.5683 21 6 2.5299 -0.7559 3.6153 22 6 1.5073 -1.6541 4.2621 23 1 0.5180 -1.7396 3.8373 24 6 1.8347 -2.3674 5.3957 25 7 3.0398 -2.2643 5.9121 26 14 0.5672 -3.4812 6.1971 27 1 -0.2024 -2.7098 7.2059 28 1 -0.3593 -4.0028 5.1604 29 1 1.2558 -4.6165 6.8620 30 1 -0.3633 0.3527 0.9653 31 1 -0.3633 0.6597 -0.7880 32 1 -0.3634 -1.0122 -0.1773 33 1 2.4438 0.1013 -5.6339 34 1 2.6631 1.4484 -4.4295 35 1 5.7835 1.0120 -5.8849 36 1 7.7229 -0.1545 -4.9332 37 1 5.1590 -2.1850 -2.1937 38 1 1.9834 1.9801 2.5127 39 1 0.5289 1.2805 1.7622 40 1 0.7396 1.2120 3.5282 41 1 2.8431 0.0089 4.3260 42 1 3.3943 -1.3476 3.3139 43 1 3.2701 -2.7658 6.7099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796069344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:09 Heat of formation + Delta-G solvation = -107.318464 kcal Electronic energy + Delta-G solvation = -28471.711837 eV Core-core repulsion = 24204.851369 eV Total energy + Delta-G solvation = -4266.860468 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.01149 -42.51015 -41.31629 -40.31170 -37.81560 -36.73642 -36.16635 -34.91439 -33.12433 -31.94980 -29.69302 -28.84667 -27.72384 -26.84191 -25.86381 -24.51822 -23.57644 -22.39146 -21.14244 -20.50512 -19.34275 -18.72435 -18.43750 -18.22166 -17.71053 -17.56731 -17.14396 -16.82841 -16.64679 -16.28325 -16.23286 -16.13760 -15.29703 -14.91203 -14.89570 -14.65582 -14.35699 -14.26186 -14.10037 -13.71718 -13.65729 -13.53289 -13.34542 -13.07065 -12.98812 -12.88206 -12.81765 -12.63518 -12.50241 -12.37897 -12.21706 -11.99547 -11.97263 -11.73623 -11.50813 -10.66991 -10.64806 -10.11481 -9.58843 -9.55938 -8.25225 -6.39993 -0.06496 0.06161 0.91704 1.22721 1.35610 1.39204 1.48981 1.57932 2.26601 2.39159 2.46964 2.69360 3.04894 3.14664 3.24968 3.34558 3.44142 3.53112 3.75156 3.81306 3.90506 4.12881 4.19197 4.22772 4.42171 4.51706 4.56644 4.59095 4.62875 4.78771 4.84258 4.89767 4.91300 4.98695 5.02605 5.10320 5.12636 5.14404 5.24258 5.45772 5.48793 5.74815 5.77308 6.00672 6.43840 6.58689 6.68603 7.17131 7.33359 8.82488 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014249 B = 0.002853 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.613593 B = 9812.615102 C =11072.360461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.080 3.920 3 H 0.119 0.881 4 O -0.343 6.343 5 C 0.474 3.526 6 O -0.512 6.512 7 C -0.039 4.039 8 H 0.159 0.841 9 C -0.036 4.036 10 C -0.122 4.122 11 C -0.066 4.066 12 C -0.135 4.135 13 C 0.076 3.924 14 F -0.147 7.147 15 C -0.135 4.135 16 C -0.129 4.129 17 C 0.496 3.504 18 O -0.577 6.577 19 N -0.601 5.601 20 C 0.059 3.941 21 C 0.261 3.739 22 C -0.543 4.543 23 H 0.056 0.944 24 C 0.007 3.993 25 N -0.929 5.929 26 Si 0.970 3.030 27 H -0.261 1.261 28 H -0.272 1.272 29 H -0.282 1.282 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.150 0.850 34 H 0.116 0.884 35 H 0.171 0.829 36 H 0.167 0.833 37 H 0.117 0.883 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.031 0.969 42 H -0.005 1.005 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.900 10.262 -25.686 27.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.022 3.978 3 H 0.137 0.863 4 O -0.259 6.259 5 C 0.318 3.682 6 O -0.401 6.401 7 C -0.057 4.057 8 H 0.177 0.823 9 C -0.072 4.072 10 C -0.122 4.122 11 C -0.083 4.083 12 C -0.154 4.154 13 C 0.057 3.943 14 F -0.126 7.126 15 C -0.154 4.154 16 C -0.129 4.129 17 C 0.283 3.717 18 O -0.457 6.457 19 N -0.333 5.333 20 C -0.082 4.082 21 C 0.140 3.860 22 C -0.581 4.581 23 H 0.075 0.925 24 C -0.192 4.192 25 N -0.569 5.569 26 Si 0.794 3.206 27 H -0.186 1.186 28 H -0.197 1.197 29 H -0.208 1.208 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.087 0.913 33 H 0.168 0.832 34 H 0.134 0.866 35 H 0.188 0.812 36 H 0.184 0.816 37 H 0.135 0.865 38 H 0.089 0.911 39 H 0.121 0.879 40 H 0.096 0.904 41 H 0.049 0.951 42 H 0.014 0.986 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.552 9.979 -25.492 27.420 hybrid contribution 0.287 -1.240 1.591 2.038 sum -1.264 8.739 -23.902 25.480 Atomic orbital electron populations 1.22339 0.89365 1.04626 1.05799 1.22568 0.97833 0.96703 0.80733 0.86339 1.86658 1.76626 1.42431 1.20138 1.23828 0.73327 0.85714 0.85349 1.90616 1.48650 1.16545 1.84260 1.21375 0.92003 1.02483 0.89858 0.82340 1.21922 0.87717 1.00083 0.97431 1.22728 0.96739 0.96610 0.96134 1.20748 0.88958 0.98725 0.99892 1.21365 1.02119 0.96230 0.95647 1.17635 0.82677 0.96889 0.97102 1.91490 1.54450 1.80580 1.86095 1.20265 0.90950 1.02380 1.01787 1.21048 0.94282 0.98774 0.98838 1.20744 0.79613 0.86090 0.85229 1.90672 1.46943 1.21416 1.86631 1.48074 1.55254 1.22737 1.07259 1.22331 0.97904 0.83110 1.04872 1.18829 0.93034 0.92426 0.81744 1.21670 0.98885 1.26935 1.10621 0.92534 1.25891 0.97684 0.98120 0.97549 1.70055 1.20952 1.43140 1.22733 0.85375 0.78553 0.78212 0.78435 1.18583 1.19671 1.20756 0.88029 0.88093 0.91273 0.83203 0.86591 0.81174 0.81559 0.86523 0.91057 0.87927 0.90375 0.95136 0.98648 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 9.09 71.98 0.65 -3.38 16 2 C 0.08 2.58 2.16 29.85 0.06 2.64 16 3 H 0.12 3.44 6.74 -2.39 -0.02 3.43 16 4 O -0.34 -11.34 9.45 -45.20 -0.43 -11.76 16 5 C 0.47 12.42 7.43 71.24 0.53 12.94 16 6 O -0.51 -13.95 14.88 21.96 0.33 -13.62 16 7 C -0.04 -0.72 4.26 -14.65 -0.06 -0.78 16 8 H 0.16 2.13 8.14 -2.39 -0.02 2.11 16 9 C -0.04 -0.41 7.91 30.04 0.24 -0.18 16 10 C -0.12 -2.00 7.32 -21.77 -0.16 -2.16 16 11 C -0.07 -0.89 10.04 22.37 0.22 -0.67 16 12 C -0.14 -2.28 10.01 22.25 0.22 -2.05 16 13 C 0.08 1.85 7.31 22.36 0.16 2.01 16 14 F -0.15 -4.02 17.27 44.97 0.78 -3.25 16 15 C -0.13 -3.64 10.02 22.30 0.22 -3.42 16 16 C -0.13 -2.94 7.05 -19.82 -0.14 -3.08 16 17 C 0.50 22.03 7.00 87.66 0.61 22.64 16 18 O -0.58 -32.02 16.19 15.39 0.25 -31.78 16 19 N -0.60 -26.22 2.86 -851.14 -2.43 -28.65 16 20 C 0.06 1.77 9.86 127.77 1.26 3.03 16 21 C 0.26 14.33 5.14 85.63 0.44 14.77 16 22 C -0.54 -31.55 9.39 25.60 0.24 -31.31 16 23 H 0.06 3.23 7.81 -2.91 -0.02 3.20 16 24 C 0.01 0.38 5.46 84.65 0.46 0.84 16 25 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 26 Si 0.97 45.17 29.54 68.60 2.03 47.19 16 27 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 28 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 29 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 30 H 0.10 2.28 5.50 -2.39 -0.01 2.27 16 31 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.15 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.12 1.46 7.02 -2.39 -0.02 1.45 16 35 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 36 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 37 H 0.12 3.56 8.06 -2.91 -0.02 3.54 16 38 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.10 2.34 4.11 -2.39 -0.01 2.33 16 40 H 0.08 2.37 8.11 -2.39 -0.02 2.35 16 41 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 42 H 0.00 -0.29 7.50 -2.39 -0.02 -0.31 16 43 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -82.46 372.29 6.83 -75.63 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.05 Total: 10.88 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 4.98 Total: 11.87 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -2.15 Total: -85.17 kcal Atomic # 8 Polarization: -57.31 SS G_CDS: 0.15 Total: -57.16 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.78 Total: -3.25 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -82.46 6.83 -75.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796069344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.685 kcal (2) G-P(sol) polarization free energy of solvation -82.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds