Wall clock time and date at job start Tue Mar 31 2020 18:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47278 * 2 1 4 4 O 1.45193 * 109.46935 * 239.99336 * 2 1 3 5 5 C 1.34231 * 117.00126 * 90.00449 * 4 2 1 6 6 O 1.20833 * 119.99644 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00640 * 179.71955 * 5 4 2 8 8 H 1.09001 * 112.82938 * 311.39172 * 7 5 4 9 9 C 1.53511 * 113.59105 * 180.27604 * 7 5 4 10 10 C 1.51615 * 87.25097 * 245.41168 * 9 7 5 11 11 C 1.38395 * 147.49027 * 180.02562 * 10 9 7 12 12 C 1.38057 * 120.35844 * 180.02562 * 11 10 9 13 13 C 1.38466 * 119.92941 * 359.97438 * 12 11 10 14 14 F 1.35101 * 120.04718 * 180.02562 * 13 12 11 15 15 C 1.38321 * 119.90278 * 0.02562 * 13 12 11 16 16 C 1.38345 * 120.30292 * 359.97438 * 15 13 12 17 17 C 1.50704 * 109.46771 * 120.00163 * 2 1 3 18 18 O 1.21276 * 120.00460 * 119.99710 * 17 2 1 19 19 N 1.34782 * 119.99734 * 299.99483 * 17 2 1 20 20 C 1.46503 * 119.99939 * 0.02562 * 19 17 2 21 21 C 1.46502 * 119.99909 * 180.02562 * 19 17 2 22 22 C 1.50699 * 109.47072 * 90.00093 * 21 19 17 23 23 H 1.07998 * 120.00065 * 359.97438 * 22 21 19 24 24 C 1.37871 * 119.99831 * 180.02562 * 22 21 19 25 25 N 1.31518 * 120.00009 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 120.00188 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.46718 * 90.00415 * 26 24 22 28 28 H 1.48498 * 109.47125 * 210.00164 * 26 24 22 29 29 H 1.48492 * 109.47128 * 330.00388 * 26 24 22 30 30 H 1.08999 * 109.47835 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47062 * 300.00770 * 1 2 3 32 32 H 1.09005 * 109.47320 * 59.99859 * 1 2 3 33 33 H 1.09001 * 113.58711 * 0.02562 * 9 7 5 34 34 H 1.09003 * 113.59048 * 130.81859 * 9 7 5 35 35 H 1.07998 * 119.82459 * 0.02562 * 11 10 9 36 36 H 1.08004 * 120.03318 * 180.02562 * 12 11 10 37 37 H 1.07997 * 119.85040 * 180.02562 * 15 13 12 38 38 H 1.09000 * 109.46636 * 90.00251 * 20 19 17 39 39 H 1.08998 * 109.46861 * 209.99901 * 20 19 17 40 40 H 1.09001 * 109.47185 * 330.00012 * 20 19 17 41 41 H 1.09000 * 109.46638 * 210.00123 * 21 19 17 42 42 H 1.08994 * 109.47029 * 330.00186 * 21 19 17 43 43 H 0.96998 * 120.00038 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6846 -1.1854 5 6 2.2171 0.0638 -2.2811 6 8 1.9983 1.2517 -2.2504 7 6 2.7247 -0.5763 -3.5474 8 1 3.5897 -1.2179 -3.3796 9 6 2.9103 0.4147 -4.7050 10 6 1.8034 -0.3310 -5.4244 11 6 1.0156 -0.4420 -6.5567 12 6 0.0639 -1.4378 -6.6497 13 6 -0.1048 -2.3319 -5.6059 14 9 -1.0350 -3.3076 -5.6946 15 6 0.6805 -2.2245 -4.4723 16 6 1.6350 -1.2277 -4.3762 17 6 2.0322 -0.7105 1.2305 18 8 2.7294 -1.6966 1.1193 19 7 1.7066 -0.2499 2.4546 20 6 0.8640 0.9410 2.5890 21 6 2.1953 -0.9402 3.6508 22 6 3.5227 -0.3562 4.0608 23 1 3.9589 0.4483 3.4873 24 6 4.1807 -0.8498 5.1672 25 7 5.3389 -0.3398 5.5253 26 14 3.4267 -2.2419 6.1586 27 1 3.8867 -3.5440 5.6126 28 1 3.8478 -2.1236 7.5777 29 1 1.9462 -2.1647 6.0736 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.6490 1.4409 -4.4468 34 1 3.8803 0.3353 -5.1959 35 1 1.1459 0.2541 -7.3721 36 1 -0.5478 -1.5199 -7.5360 37 1 0.5485 -2.9225 -3.6589 38 1 -0.1838 0.6427 2.6225 39 1 1.1218 1.4666 3.5084 40 1 1.0272 1.5997 1.7359 41 1 1.4773 -0.8149 4.4613 42 1 2.3167 -2.0014 3.4338 43 1 5.8021 -0.6873 6.3035 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796069360.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:13 Heat of formation + Delta-G solvation = -85.236467 kcal Electronic energy + Delta-G solvation = -28329.459582 eV Core-core repulsion = 24063.556661 eV Total energy + Delta-G solvation = -4265.902921 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.21702 -41.51027 -40.18630 -38.98166 -36.65804 -35.36463 -35.10476 -32.89575 -31.74563 -31.26317 -28.42193 -28.04175 -26.47381 -25.98235 -24.32233 -23.18171 -22.21239 -21.43915 -20.24243 -18.95901 -18.33792 -17.69367 -17.04528 -16.99559 -16.67819 -16.30305 -15.94659 -15.83364 -15.55240 -15.38801 -14.83924 -14.57252 -14.07144 -14.03504 -13.76821 -13.56709 -13.40024 -13.02604 -12.86386 -12.48218 -12.39071 -12.31438 -12.28737 -12.15634 -11.86740 -11.70766 -11.60722 -11.33224 -11.13795 -11.00620 -10.77523 -10.69127 -10.55997 -10.19117 -9.59094 -9.41534 -9.07243 -8.88291 -8.62797 -7.83911 -6.12421 -4.12147 0.62938 0.78316 1.93286 2.32911 3.12232 3.13140 3.26832 3.32664 3.34643 3.44264 3.69347 3.78775 3.91896 4.10656 4.36093 4.53453 4.55850 4.70448 4.79429 4.87870 4.89560 5.01189 5.11364 5.20595 5.21368 5.32235 5.40699 5.50520 5.55114 5.57225 5.59998 5.69512 5.72363 5.76470 5.90667 6.12943 6.15560 6.29784 6.44154 6.60470 6.85742 7.19057 7.54304 7.56916 8.06005 8.40940 8.77369 8.90735 9.46853 11.00831 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019833 B = 0.002466 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.420923 B =11352.623327 C =11701.243121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.071 3.929 3 H 0.109 0.891 4 O -0.320 6.320 5 C 0.480 3.520 6 O -0.501 6.501 7 C -0.039 4.039 8 H 0.141 0.859 9 C -0.054 4.054 10 C -0.126 4.126 11 C -0.068 4.068 12 C -0.142 4.142 13 C 0.099 3.901 14 F -0.136 7.136 15 C -0.115 4.115 16 C -0.096 4.096 17 C 0.512 3.488 18 O -0.518 6.518 19 N -0.591 5.591 20 C 0.075 3.925 21 C 0.217 3.783 22 C -0.532 4.532 23 H 0.075 0.925 24 C 0.073 3.927 25 N -0.896 5.896 26 Si 0.877 3.123 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.266 1.266 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.133 0.867 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.053 0.947 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.034 0.966 42 H 0.039 0.961 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.765 1.700 -23.347 26.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.012 3.988 3 H 0.127 0.873 4 O -0.234 6.234 5 C 0.322 3.678 6 O -0.389 6.389 7 C -0.058 4.058 8 H 0.159 0.841 9 C -0.090 4.090 10 C -0.126 4.126 11 C -0.086 4.086 12 C -0.161 4.161 13 C 0.079 3.921 14 F -0.114 7.114 15 C -0.134 4.134 16 C -0.096 4.096 17 C 0.296 3.704 18 O -0.393 6.393 19 N -0.324 5.324 20 C -0.069 4.069 21 C 0.097 3.903 22 C -0.571 4.571 23 H 0.093 0.907 24 C -0.130 4.130 25 N -0.534 5.534 26 Si 0.704 3.296 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.190 1.190 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.151 0.849 36 H 0.159 0.841 37 H 0.157 0.843 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.371 1.456 -23.197 25.875 hybrid contribution -0.483 -0.799 0.725 1.182 sum -11.854 0.657 -22.472 25.416 Atomic orbital electron populations 1.22411 0.92327 1.04132 1.04433 1.22618 0.95728 0.97755 0.82665 0.87307 1.86603 1.76184 1.41286 1.19360 1.22978 0.74253 0.85636 0.84952 1.90650 1.47864 1.16300 1.84038 1.21244 0.97764 0.97573 0.89224 0.84106 1.21903 0.97181 0.99494 0.90463 1.22258 0.97931 0.97840 0.94552 1.20103 0.93945 0.97572 0.96985 1.21047 1.00488 0.95638 0.98915 1.17317 0.90281 0.88890 0.95568 1.91525 1.63090 1.60355 1.96447 1.20293 0.95565 0.99579 0.97915 1.21372 0.96221 0.95569 0.96452 1.19761 0.81493 0.85354 0.83788 1.90707 1.36717 1.26049 1.85857 1.47723 1.50075 1.28535 1.06087 1.21924 0.93709 0.87827 1.03400 1.19730 0.95510 0.93746 0.81324 1.21307 1.03097 1.20473 1.12191 0.90720 1.24857 0.94626 0.96473 0.97013 1.69896 1.14740 1.42207 1.26556 0.86841 0.80019 0.83234 0.79539 1.19832 1.21004 1.19026 0.90997 0.88757 0.91284 0.86740 0.87334 0.84886 0.84079 0.84349 0.92881 0.90032 0.91939 0.94786 0.94342 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 9.18 37.16 0.34 -1.86 16 2 C 0.07 1.14 2.18 -27.88 -0.06 1.08 16 3 H 0.11 1.70 6.42 -51.93 -0.33 1.37 16 4 O -0.32 -5.22 9.41 -45.90 -0.43 -5.65 16 5 C 0.48 6.66 7.47 36.00 0.27 6.93 16 6 O -0.50 -7.56 14.92 -18.76 -0.28 -7.84 16 7 C -0.04 -0.40 4.45 -92.23 -0.41 -0.81 16 8 H 0.14 1.22 8.14 -51.93 -0.42 0.79 16 9 C -0.05 -0.43 7.77 -27.19 -0.21 -0.64 16 10 C -0.13 -1.11 7.49 -103.86 -0.78 -1.89 16 11 C -0.07 -0.51 10.02 -39.59 -0.40 -0.90 16 12 C -0.14 -1.11 10.02 -39.56 -0.40 -1.51 16 13 C 0.10 0.97 7.30 -39.47 -0.29 0.68 16 14 F -0.14 -1.43 17.27 2.25 0.04 -1.39 16 15 C -0.11 -1.20 10.01 -39.51 -0.40 -1.59 16 16 C -0.10 -0.99 6.97 -103.88 -0.72 -1.72 16 17 C 0.51 10.61 7.15 -10.98 -0.08 10.54 16 18 O -0.52 -13.03 16.08 -14.10 -0.23 -13.26 16 19 N -0.59 -11.98 2.86 -182.95 -0.52 -12.51 16 20 C 0.07 1.10 8.80 59.85 0.53 1.63 16 21 C 0.22 5.23 4.23 -5.19 -0.02 5.20 16 22 C -0.53 -15.16 9.94 -34.44 -0.34 -15.51 16 23 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 24 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 25 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 26 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 27 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.02 4.53 -51.93 -0.24 0.78 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.11 0.99 7.05 -51.93 -0.37 0.62 16 34 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 36 H 0.14 0.78 8.06 -52.48 -0.42 0.35 16 37 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.05 0.62 6.95 -51.93 -0.36 0.26 16 39 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 40 H 0.06 0.78 6.01 -51.93 -0.31 0.47 16 41 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 42 H 0.04 0.99 6.85 -51.93 -0.36 0.63 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 367.28 15.07 5.53 5.53 Total: -1.00 -35.82 367.28 -8.15 -43.97 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -5.30 Total: -0.47 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -3.06 Total: 1.64 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.25 Total: -39.19 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.94 Total: -26.74 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.82 -8.15 -43.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796069360.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.265 kcal (2) G-P(sol) polarization free energy of solvation -35.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds