Wall clock time and date at job start Tue Mar 31 2020 18:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47278 * 2 1 4 4 O 1.45193 * 109.46935 * 239.99336 * 2 1 3 5 5 C 1.34231 * 117.00126 * 90.00449 * 4 2 1 6 6 O 1.20833 * 119.99644 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00640 * 179.71955 * 5 4 2 8 8 H 1.09001 * 112.82938 * 311.39172 * 7 5 4 9 9 C 1.53511 * 113.59105 * 180.27604 * 7 5 4 10 10 C 1.51615 * 87.25097 * 245.41168 * 9 7 5 11 11 C 1.38395 * 147.49027 * 180.02562 * 10 9 7 12 12 C 1.38057 * 120.35844 * 180.02562 * 11 10 9 13 13 C 1.38466 * 119.92941 * 359.97438 * 12 11 10 14 14 F 1.35101 * 120.04718 * 180.02562 * 13 12 11 15 15 C 1.38321 * 119.90278 * 0.02562 * 13 12 11 16 16 C 1.38345 * 120.30292 * 359.97438 * 15 13 12 17 17 C 1.50704 * 109.46771 * 120.00163 * 2 1 3 18 18 O 1.21276 * 120.00460 * 119.99710 * 17 2 1 19 19 N 1.34782 * 119.99734 * 299.99483 * 17 2 1 20 20 C 1.46503 * 119.99939 * 0.02562 * 19 17 2 21 21 C 1.46502 * 119.99909 * 180.02562 * 19 17 2 22 22 C 1.50699 * 109.47072 * 90.00093 * 21 19 17 23 23 H 1.07998 * 120.00065 * 359.97438 * 22 21 19 24 24 C 1.37871 * 119.99831 * 180.02562 * 22 21 19 25 25 N 1.31518 * 120.00009 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 120.00188 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.46718 * 90.00415 * 26 24 22 28 28 H 1.48498 * 109.47125 * 210.00164 * 26 24 22 29 29 H 1.48492 * 109.47128 * 330.00388 * 26 24 22 30 30 H 1.08999 * 109.47835 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47062 * 300.00770 * 1 2 3 32 32 H 1.09005 * 109.47320 * 59.99859 * 1 2 3 33 33 H 1.09001 * 113.58711 * 0.02562 * 9 7 5 34 34 H 1.09003 * 113.59048 * 130.81859 * 9 7 5 35 35 H 1.07998 * 119.82459 * 0.02562 * 11 10 9 36 36 H 1.08004 * 120.03318 * 180.02562 * 12 11 10 37 37 H 1.07997 * 119.85040 * 180.02562 * 15 13 12 38 38 H 1.09000 * 109.46636 * 90.00251 * 20 19 17 39 39 H 1.08998 * 109.46861 * 209.99901 * 20 19 17 40 40 H 1.09001 * 109.47185 * 330.00012 * 20 19 17 41 41 H 1.09000 * 109.46638 * 210.00123 * 21 19 17 42 42 H 1.08994 * 109.47029 * 330.00186 * 21 19 17 43 43 H 0.96998 * 120.00038 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6846 -1.1854 5 6 2.2171 0.0638 -2.2811 6 8 1.9983 1.2517 -2.2504 7 6 2.7247 -0.5763 -3.5474 8 1 3.5897 -1.2179 -3.3796 9 6 2.9103 0.4147 -4.7050 10 6 1.8034 -0.3310 -5.4244 11 6 1.0156 -0.4420 -6.5567 12 6 0.0639 -1.4378 -6.6497 13 6 -0.1048 -2.3319 -5.6059 14 9 -1.0350 -3.3076 -5.6946 15 6 0.6805 -2.2245 -4.4723 16 6 1.6350 -1.2277 -4.3762 17 6 2.0322 -0.7105 1.2305 18 8 2.7294 -1.6966 1.1193 19 7 1.7066 -0.2499 2.4546 20 6 0.8640 0.9410 2.5890 21 6 2.1953 -0.9402 3.6508 22 6 3.5227 -0.3562 4.0608 23 1 3.9589 0.4483 3.4873 24 6 4.1807 -0.8498 5.1672 25 7 5.3389 -0.3398 5.5253 26 14 3.4267 -2.2419 6.1586 27 1 3.8867 -3.5440 5.6126 28 1 3.8478 -2.1236 7.5777 29 1 1.9462 -2.1647 6.0736 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.6490 1.4409 -4.4468 34 1 3.8803 0.3353 -5.1959 35 1 1.1459 0.2541 -7.3721 36 1 -0.5478 -1.5199 -7.5360 37 1 0.5485 -2.9225 -3.6589 38 1 -0.1838 0.6427 2.6225 39 1 1.1218 1.4666 3.5084 40 1 1.0272 1.5997 1.7359 41 1 1.4773 -0.8149 4.4613 42 1 2.3167 -2.0014 3.4338 43 1 5.8021 -0.6873 6.3035 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796069360.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:12 Heat of formation + Delta-G solvation = -106.427975 kcal Electronic energy + Delta-G solvation = -28330.378515 eV Core-core repulsion = 24063.556661 eV Total energy + Delta-G solvation = -4266.821854 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.97165 -42.45586 -41.30838 -40.34520 -37.83444 -36.81143 -36.11200 -34.89434 -33.21480 -31.94402 -30.19057 -28.86776 -27.82291 -26.83086 -25.72263 -24.30578 -23.49235 -22.37047 -21.16126 -20.49879 -19.38670 -19.15329 -18.52131 -18.15340 -17.65952 -17.57733 -17.10815 -16.91271 -16.60461 -16.54856 -16.23443 -15.67002 -15.36284 -15.12462 -14.76543 -14.63836 -14.55729 -14.41045 -13.97912 -13.80471 -13.76108 -13.65350 -13.45194 -13.10782 -12.99933 -12.85067 -12.81072 -12.59515 -12.39633 -12.37841 -12.05786 -12.01541 -11.95915 -11.76484 -11.56053 -10.84947 -10.72601 -10.10015 -9.57181 -9.53243 -8.35678 -6.41893 -0.05953 0.10045 0.86328 1.21581 1.33628 1.37518 1.45731 1.52960 2.25665 2.30225 2.46994 2.70340 2.98616 3.11322 3.19118 3.31704 3.44942 3.51929 3.73671 3.78799 3.92391 4.10799 4.23861 4.27182 4.43835 4.48132 4.55349 4.56224 4.61292 4.75740 4.77245 4.83297 4.88744 4.89196 4.95347 5.02837 5.05744 5.13599 5.20593 5.41516 5.48502 5.49116 5.78681 6.18716 6.40151 6.52692 6.59567 7.11387 7.25494 8.81271 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019833 B = 0.002466 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.420923 B =11352.623327 C =11701.243121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.077 3.923 3 H 0.114 0.886 4 O -0.341 6.341 5 C 0.477 3.523 6 O -0.515 6.515 7 C -0.046 4.046 8 H 0.152 0.848 9 C -0.042 4.042 10 C -0.123 4.123 11 C -0.064 4.064 12 C -0.133 4.133 13 C 0.081 3.919 14 F -0.144 7.144 15 C -0.131 4.131 16 C -0.120 4.120 17 C 0.502 3.498 18 O -0.576 6.576 19 N -0.596 5.596 20 C 0.065 3.935 21 C 0.223 3.777 22 C -0.540 4.540 23 H 0.027 0.973 24 C 0.011 3.989 25 N -0.945 5.945 26 Si 0.949 3.051 27 H -0.277 1.277 28 H -0.275 1.275 29 H -0.234 1.234 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.139 0.861 35 H 0.167 0.833 36 H 0.168 0.832 37 H 0.129 0.871 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.022 0.978 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.034 2.221 -24.821 28.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.019 3.981 3 H 0.132 0.868 4 O -0.257 6.257 5 C 0.321 3.679 6 O -0.404 6.404 7 C -0.064 4.064 8 H 0.170 0.830 9 C -0.078 4.078 10 C -0.123 4.123 11 C -0.081 4.081 12 C -0.151 4.151 13 C 0.061 3.939 14 F -0.123 7.123 15 C -0.150 4.150 16 C -0.120 4.120 17 C 0.289 3.711 18 O -0.455 6.455 19 N -0.328 5.328 20 C -0.076 4.076 21 C 0.102 3.898 22 C -0.579 4.579 23 H 0.046 0.954 24 C -0.187 4.187 25 N -0.585 5.585 26 Si 0.772 3.228 27 H -0.203 1.203 28 H -0.200 1.200 29 H -0.156 1.156 30 H 0.088 0.912 31 H 0.135 0.865 32 H 0.101 0.899 33 H 0.128 0.872 34 H 0.157 0.843 35 H 0.184 0.816 36 H 0.186 0.814 37 H 0.147 0.853 38 H 0.113 0.887 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.040 0.960 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.690 2.029 -24.687 28.301 hybrid contribution 0.280 -0.877 1.102 1.436 sum -13.410 1.152 -23.584 27.155 Atomic orbital electron populations 1.22410 0.89122 1.04600 1.06167 1.22552 0.97950 0.96687 0.80914 0.86832 1.86617 1.76701 1.42343 1.19992 1.23694 0.73580 0.85570 0.85091 1.90626 1.48619 1.16847 1.84263 1.21487 0.98189 0.98691 0.88051 0.83042 1.21937 0.98484 0.98328 0.89031 1.22477 0.98034 0.97187 0.94579 1.20478 0.92787 0.97604 0.97268 1.21396 1.00299 0.94538 0.98907 1.17533 0.90523 0.89564 0.96231 1.91498 1.63430 1.60866 1.96517 1.20358 0.96370 0.99950 0.98306 1.21435 0.96788 0.96468 0.97335 1.20615 0.80476 0.84842 0.85186 1.90664 1.39283 1.28720 1.86854 1.47804 1.50224 1.29730 1.05020 1.22304 0.94909 0.86175 1.04234 1.19447 0.93974 0.92861 0.83557 1.21536 1.05168 1.19416 1.11762 0.95439 1.25876 0.95016 0.99438 0.98396 1.70050 1.16615 1.44240 1.27563 0.85696 0.80901 0.78571 0.77674 1.20282 1.19998 1.15642 0.91187 0.86549 0.89888 0.87183 0.84296 0.81570 0.81439 0.85303 0.88706 0.90551 0.89715 0.92084 0.96040 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.82 9.18 71.98 0.66 -3.16 16 2 C 0.08 2.47 2.18 29.85 0.07 2.53 16 3 H 0.11 3.49 6.42 -2.39 -0.02 3.48 16 4 O -0.34 -11.33 9.41 -45.07 -0.42 -11.76 16 5 C 0.48 13.22 7.47 71.23 0.53 13.75 16 6 O -0.52 -15.22 14.92 21.94 0.33 -14.89 16 7 C -0.05 -0.91 4.45 -11.84 -0.05 -0.97 16 8 H 0.15 2.60 8.14 -2.39 -0.02 2.58 16 9 C -0.04 -0.58 7.77 30.30 0.24 -0.34 16 10 C -0.12 -1.91 7.49 -19.37 -0.14 -2.05 16 11 C -0.06 -0.75 10.02 22.26 0.22 -0.53 16 12 C -0.13 -1.76 10.02 22.28 0.22 -1.53 16 13 C 0.08 1.52 7.30 22.34 0.16 1.68 16 14 F -0.14 -3.00 17.27 44.97 0.78 -2.22 16 15 C -0.13 -2.76 10.01 22.31 0.22 -2.54 16 16 C -0.12 -2.42 6.97 -19.38 -0.14 -2.55 16 17 C 0.50 21.16 7.15 87.66 0.63 21.79 16 18 O -0.58 -30.20 16.08 15.78 0.25 -29.94 16 19 N -0.60 -23.94 2.86 -851.12 -2.43 -26.37 16 20 C 0.07 1.77 8.80 127.77 1.12 2.89 16 21 C 0.22 10.72 4.23 85.63 0.36 11.09 16 22 C -0.54 -31.72 9.94 25.60 0.25 -31.47 16 23 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 24 C 0.01 0.64 5.47 84.65 0.46 1.10 16 25 N -0.94 -59.73 13.96 21.45 0.30 -59.43 16 26 Si 0.95 43.95 27.47 68.60 1.88 45.84 16 27 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 28 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 29 H -0.23 -9.53 6.54 99.48 0.65 -8.88 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.12 2.10 4.53 -2.38 -0.01 2.09 16 32 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.11 1.69 7.05 -2.39 -0.02 1.67 16 34 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 36 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 37 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.09 1.83 6.95 -2.39 -0.02 1.82 16 39 H 0.08 2.18 8.07 -2.39 -0.02 2.16 16 40 H 0.08 1.93 6.01 -2.39 -0.01 1.91 16 41 H 0.06 2.61 7.13 -2.39 -0.02 2.59 16 42 H 0.02 1.11 6.85 -2.39 -0.02 1.09 16 43 H 0.27 15.78 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -82.83 367.28 6.51 -76.32 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 1.00 Total: 12.77 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 4.82 Total: 9.69 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -2.13 Total: -85.80 kcal Atomic # 8 Polarization: -56.75 SS G_CDS: 0.16 Total: -56.59 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.78 Total: -2.22 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.84 kcal Total: -82.83 6.51 -76.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796069360.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.103 kcal (2) G-P(sol) polarization free energy of solvation -82.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds