Wall clock time and date at job start Tue Mar 31 2020 18:42:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45202 * 1
3 3 C 1.34647 * 116.99885 * 2 1
4 4 O 1.21508 * 120.00396 * 359.97438 * 3 2 1
5 5 N 1.34781 * 120.00002 * 180.02562 * 3 2 1
6 6 C 1.40069 * 120.00485 * 184.21672 * 5 3 2
7 7 C 1.38889 * 119.99140 * 324.67087 * 6 5 3
8 8 C 1.38013 * 120.00593 * 180.24979 * 7 6 5
9 9 C 1.38934 * 119.99392 * 359.50282 * 8 7 6
10 10 N 1.39846 * 120.00860 * 180.24658 * 9 8 7
11 11 C 1.34779 * 120.00099 * 151.32595 * 10 9 8
12 12 O 1.21396 * 119.99714 * 353.31304 * 11 10 9
13 13 C 1.49321 * 120.00154 * 173.31013 * 11 10 9
14 14 O 1.21368 * 120.00263 * 4.12055 * 13 11 10
15 15 N 1.34770 * 120.00414 * 184.11507 * 13 11 10
16 16 C 1.46505 * 119.99975 * 0.97861 * 15 13 11
17 17 C 1.46503 * 120.00498 * 180.98138 * 15 13 11
18 18 C 1.50704 * 109.47117 * 89.99771 * 17 15 13
19 19 H 1.08001 * 120.00025 * 0.02562 * 18 17 15
20 20 C 1.37877 * 119.99556 * 179.97438 * 18 17 15
21 21 N 1.31507 * 120.00253 * 0.02562 * 20 18 17
22 22 Si 1.86798 * 119.99499 * 179.97438 * 20 18 17
23 23 H 1.48503 * 109.47023 * 90.00917 * 22 20 18
24 24 H 1.48502 * 109.47166 * 210.00317 * 22 20 18
25 25 H 1.48501 * 109.47518 * 330.00815 * 22 20 18
26 26 C 1.38935 * 119.98655 * 0.52290 * 9 8 7
27 27 C 1.38020 * 119.99611 * 359.72357 * 26 9 8
28 28 H 1.09002 * 109.47203 * 179.97438 * 1 2 3
29 29 H 1.08998 * 109.47117 * 300.00137 * 1 2 3
30 30 H 1.08996 * 109.47177 * 59.99864 * 1 2 3
31 31 H 0.97003 * 119.99313 * 4.21351 * 5 3 2
32 32 H 1.08001 * 119.99458 * 359.97438 * 7 6 5
33 33 H 1.08005 * 120.00059 * 179.74853 * 8 7 6
34 34 H 0.96993 * 119.99813 * 331.33538 * 10 9 8
35 35 H 1.09006 * 109.46463 * 83.27185 * 16 15 13
36 36 H 1.08999 * 109.47170 * 203.27080 * 16 15 13
37 37 H 1.09003 * 109.46712 * 323.27435 * 16 15 13
38 38 H 1.09004 * 109.47288 * 210.00205 * 17 15 13
39 39 H 1.09004 * 109.46940 * 329.99970 * 17 15 13
40 40 H 0.97001 * 120.00065 * 179.97438 * 21 20 18
41 41 H 1.08007 * 120.00490 * 179.70806 * 26 9 8
42 42 H 1.07995 * 119.99743 * 179.97438 * 27 26 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0633 1.1997 0.0000
4 8 1.4016 2.2188 -0.0005
5 7 3.4092 1.2703 -0.0005
6 6 4.0454 2.5150 0.0887
7 6 3.4835 3.6274 -0.5243
8 6 4.1128 4.8529 -0.4410
9 6 5.3031 4.9759 0.2649
10 7 5.9383 6.2186 0.3539
11 6 6.7006 6.5105 1.4263
12 8 6.7392 5.7472 2.3694
13 6 7.4977 7.7729 1.4544
14 8 7.4018 8.5716 0.5456
15 7 8.3236 8.0256 2.4890
16 6 8.4556 7.0518 3.5756
17 6 9.0894 9.2739 2.5272
18 6 8.2867 10.3342 3.2362
19 1 7.3045 10.1013 3.6203
20 6 8.8067 11.6012 3.3953
21 7 10.0028 11.8846 2.9280
22 14 7.8115 12.9156 4.2735
23 1 8.1151 12.8780 5.7267
24 1 8.1650 14.2509 3.7285
25 1 6.3632 12.6628 4.0637
26 6 5.8653 3.8628 0.8775
27 6 5.2382 2.6364 0.7896
28 1 -0.3634 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8899
31 1 3.9373 0.4590 -0.0626
32 1 2.5563 3.5325 -1.0700
33 1 3.6778 5.7171 -0.9211
34 1 5.8301 6.8704 -0.3562
35 1 9.1746 6.2839 3.2899
36 1 8.8028 7.5576 4.4766
37 1 7.4875 6.5895 3.7687
38 1 10.0257 9.1096 3.0605
39 1 9.3034 9.6001 1.5093
40 1 10.3685 12.7760 3.0396
41 1 6.7931 3.9571 1.4224
42 1 5.6754 1.7711 1.2655
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000802563323.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:42:55
Heat of formation + Delta-G solvation = -90.544812 kcal
Electronic energy + Delta-G solvation = -27687.876236 eV
Core-core repulsion = 23441.663090 eV
Total energy + Delta-G solvation = -4246.213146 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 335.136 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.30384 -40.76836 -39.29632 -38.03462 -36.96967 -35.85382 -35.04712 -33.83237
-32.59490 -31.17141 -29.39972 -28.11929 -27.67335 -26.19687 -24.67337 -23.62822
-22.93608 -22.04633 -21.06347 -19.77356 -19.13025 -18.02013 -17.79556 -17.20649
-16.92176 -16.65037 -16.52330 -15.81303 -15.67890 -15.15201 -14.76491 -14.52328
-14.44744 -14.25144 -14.05404 -13.86966 -13.41484 -13.16852 -13.07632 -12.95052
-12.54347 -12.37645 -12.13907 -12.01740 -11.54850 -11.35281 -11.31700 -11.18345
-11.01880 -10.87365 -10.73826 -10.51903 -10.22854 -9.85527 -9.68731 -9.15451
-8.78980 -8.50007 -7.96233 -7.79844 -6.11404 -4.16875 0.86623 1.22811
1.66344 1.87830 2.38453 2.66903 3.28089 3.34475 3.39180 3.51716
3.72341 3.79360 3.99412 4.39605 4.62549 4.69227 4.76031 4.78152
4.82467 5.02911 5.11600 5.20087 5.23544 5.27363 5.51822 5.71913
5.88800 5.95413 6.06538 6.08524 6.15201 6.19787 6.25122 6.54713
6.76259 6.84950 6.89831 7.16500 7.25682 7.34676 7.80059 7.82954
7.88655 8.11283 8.16631 8.58908 8.87913 9.48291 10.96759
Molecular weight = 335.14amu
Principal moments of inertia in cm(-1)
A = 0.027009 B = 0.001995 C = 0.001952
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1036.429932 B =14031.757744 C =14342.452136
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.056 3.944
2 O -0.370 6.370
3 C 0.646 3.354
4 O -0.553 6.553
5 N -0.647 5.647
6 C 0.128 3.872
7 C -0.095 4.095
8 C -0.128 4.128
9 C 0.146 3.854
10 N -0.650 5.650
11 C 0.510 3.490
12 O -0.500 6.500
13 C 0.494 3.506
14 O -0.524 6.524
15 N -0.560 5.560
16 C 0.064 3.936
17 C 0.241 3.759
18 C -0.531 4.531
19 H 0.060 0.940
20 C 0.063 3.937
21 N -0.893 5.893
22 Si 0.901 3.099
23 H -0.279 1.279
24 H -0.284 1.284
25 H -0.273 1.273
26 C -0.107 4.107
27 C -0.114 4.114
28 H 0.105 0.895
29 H 0.066 0.934
30 H 0.065 0.935
31 H 0.417 0.583
32 H 0.143 0.857
33 H 0.134 0.866
34 H 0.424 0.576
35 H 0.047 0.953
36 H 0.071 0.929
37 H 0.097 0.903
38 H 0.041 0.959
39 H 0.049 0.951
40 H 0.265 0.735
41 H 0.147 0.853
42 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.079 -25.209 -6.991 29.248
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.038 4.038
2 O -0.284 6.284
3 C 0.400 3.600
4 O -0.440 6.440
5 N -0.299 5.299
6 C 0.035 3.965
7 C -0.115 4.115
8 C -0.149 4.149
9 C 0.051 3.949
10 N -0.296 5.296
11 C 0.294 3.706
12 O -0.374 6.374
13 C 0.274 3.726
14 O -0.402 6.402
15 N -0.291 5.291
16 C -0.079 4.079
17 C 0.122 3.878
18 C -0.570 4.570
19 H 0.078 0.922
20 C -0.140 4.140
21 N -0.531 5.531
22 Si 0.729 3.271
23 H -0.205 1.205
24 H -0.210 1.210
25 H -0.198 1.198
26 C -0.128 4.128
27 C -0.135 4.135
28 H 0.123 0.877
29 H 0.084 0.916
30 H 0.084 0.916
31 H 0.253 0.747
32 H 0.161 0.839
33 H 0.152 0.848
34 H 0.262 0.738
35 H 0.066 0.934
36 H 0.090 0.910
37 H 0.115 0.885
38 H 0.059 0.941
39 H 0.067 0.933
40 H 0.074 0.926
41 H 0.165 0.835
42 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -13.311 -24.681 -6.756 28.844
hybrid contribution -0.461 0.735 0.248 0.903
sum -13.772 -23.946 -6.508 28.380
Atomic orbital electron populations
1.23265 0.73764 1.03753 1.03067 1.86239 1.24670 1.30620 1.86867
1.18120 0.83162 0.82460 0.76305 1.91027 1.64387 1.34528 1.54089
1.41882 1.03341 1.09158 1.75476 1.17438 0.94521 0.84236 1.00308
1.21017 1.00517 0.91080 0.98904 1.20809 0.93380 0.98343 1.02404
1.17861 0.92616 0.84974 0.99486 1.43345 1.47344 1.15807 1.23090
1.21016 0.79843 0.87888 0.81814 1.90618 1.63165 1.50267 1.33392
1.19482 0.82430 0.86110 0.84548 1.90747 1.65159 1.47691 1.36571
1.48129 1.40428 1.21343 1.19213 1.22294 1.03885 0.91549 0.90174
1.19542 0.90646 0.78249 0.99325 1.21384 1.03037 0.95422 1.37127
0.92220 1.24929 0.95116 0.98321 0.95619 1.69924 1.16111 1.21528
1.45560 0.86447 0.80425 0.80753 0.79523 1.20531 1.21009 1.19824
1.21055 1.01122 0.90034 1.00605 1.20721 0.95601 0.98200 0.99006
0.87707 0.91550 0.91592 0.74671 0.83911 0.84843 0.73812 0.93439
0.91032 0.88520 0.94129 0.93331 0.92563 0.83531 0.85039
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.29 10.56 101.05 1.07 1.36 16
2 O -0.37 -2.95 10.62 -40.34 -0.43 -3.38 16
3 C 0.65 6.47 8.59 54.06 0.46 6.94 16
4 O -0.55 -7.17 13.59 -19.28 -0.26 -7.43 16
5 N -0.65 -5.34 5.35 -14.23 -0.08 -5.42 16
6 C 0.13 1.31 6.30 -83.61 -0.53 0.78 16
7 C -0.09 -1.06 8.68 -39.42 -0.34 -1.40 16
8 C -0.13 -1.44 9.94 -39.41 -0.39 -1.83 16
9 C 0.15 1.85 6.35 -83.69 -0.53 1.32 16
10 N -0.65 -9.06 5.34 -10.27 -0.05 -9.11 16
11 C 0.51 8.62 7.54 -11.64 -0.09 8.53 16
12 O -0.50 -8.50 10.55 5.46 0.06 -8.45 16
13 C 0.49 10.23 7.73 -11.65 -0.09 10.14 16
14 O -0.52 -12.18 16.06 5.48 0.09 -12.10 16
15 N -0.56 -12.11 2.86 -183.50 -0.52 -12.63 16
16 C 0.06 1.13 9.58 59.85 0.57 1.71 16
17 C 0.24 6.20 5.14 -5.19 -0.03 6.17 16
18 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16
19 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16
20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16
21 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16
22 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16
23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
24 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16
25 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16
26 C -0.11 -1.30 8.67 -39.40 -0.34 -1.64 16
27 C -0.11 -1.13 9.96 -39.42 -0.39 -1.52 16
28 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16
29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
31 H 0.42 2.11 8.93 -40.82 -0.36 1.74 16
32 H 0.14 1.64 6.25 -52.49 -0.33 1.31 16
33 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16
34 H 0.42 5.36 8.28 -40.82 -0.34 5.03 16
35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
36 H 0.07 1.26 8.02 -51.93 -0.42 0.84 16
37 H 0.10 1.68 5.30 -51.98 -0.28 1.40 16
38 H 0.04 1.05 8.07 -51.93 -0.42 0.63 16
39 H 0.05 1.37 7.41 -51.93 -0.38 0.99 16
40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16
41 H 0.15 1.88 6.13 -52.48 -0.32 1.56 16
42 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16
LS Contribution 365.58 15.07 5.51 5.51
Total: -1.00 -34.27 365.58 -5.95 -40.22
By element:
Atomic # 1 Polarization: 9.33 SS G_CDS: -4.93 Total: 4.40 kcal
Atomic # 6 Polarization: 18.06 SS G_CDS: -1.05 Total: 17.01 kcal
Atomic # 7 Polarization: -52.51 SS G_CDS: 0.08 Total: -52.43 kcal
Atomic # 8 Polarization: -30.80 SS G_CDS: -0.54 Total: -31.35 kcal
Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -34.27 -5.95 -40.22 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000802563323.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.325 kcal
(2) G-P(sol) polarization free energy of solvation -34.270 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.595 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.950 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.545 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds