Wall clock time and date at job start Tue Mar 31 2020 18:42:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45202 * 1
3 3 C 1.34647 * 116.99885 * 2 1
4 4 O 1.21508 * 120.00396 * 359.97438 * 3 2 1
5 5 N 1.34781 * 120.00002 * 180.02562 * 3 2 1
6 6 C 1.40069 * 120.00485 * 184.21672 * 5 3 2
7 7 C 1.38889 * 119.99140 * 324.67087 * 6 5 3
8 8 C 1.38013 * 120.00593 * 180.24979 * 7 6 5
9 9 C 1.38934 * 119.99392 * 359.50282 * 8 7 6
10 10 N 1.39846 * 120.00860 * 180.24658 * 9 8 7
11 11 C 1.34779 * 120.00099 * 151.32595 * 10 9 8
12 12 O 1.21396 * 119.99714 * 353.31304 * 11 10 9
13 13 C 1.49321 * 120.00154 * 173.31013 * 11 10 9
14 14 O 1.21368 * 120.00263 * 4.12055 * 13 11 10
15 15 N 1.34770 * 120.00414 * 184.11507 * 13 11 10
16 16 C 1.46505 * 119.99975 * 0.97861 * 15 13 11
17 17 C 1.46503 * 120.00498 * 180.98138 * 15 13 11
18 18 C 1.50704 * 109.47117 * 89.99771 * 17 15 13
19 19 H 1.08001 * 120.00025 * 0.02562 * 18 17 15
20 20 C 1.37877 * 119.99556 * 179.97438 * 18 17 15
21 21 N 1.31507 * 120.00253 * 0.02562 * 20 18 17
22 22 Si 1.86798 * 119.99499 * 179.97438 * 20 18 17
23 23 H 1.48503 * 109.47023 * 90.00917 * 22 20 18
24 24 H 1.48502 * 109.47166 * 210.00317 * 22 20 18
25 25 H 1.48501 * 109.47518 * 330.00815 * 22 20 18
26 26 C 1.38935 * 119.98655 * 0.52290 * 9 8 7
27 27 C 1.38020 * 119.99611 * 359.72357 * 26 9 8
28 28 H 1.09002 * 109.47203 * 179.97438 * 1 2 3
29 29 H 1.08998 * 109.47117 * 300.00137 * 1 2 3
30 30 H 1.08996 * 109.47177 * 59.99864 * 1 2 3
31 31 H 0.97003 * 119.99313 * 4.21351 * 5 3 2
32 32 H 1.08001 * 119.99458 * 359.97438 * 7 6 5
33 33 H 1.08005 * 120.00059 * 179.74853 * 8 7 6
34 34 H 0.96993 * 119.99813 * 331.33538 * 10 9 8
35 35 H 1.09006 * 109.46463 * 83.27185 * 16 15 13
36 36 H 1.08999 * 109.47170 * 203.27080 * 16 15 13
37 37 H 1.09003 * 109.46712 * 323.27435 * 16 15 13
38 38 H 1.09004 * 109.47288 * 210.00205 * 17 15 13
39 39 H 1.09004 * 109.46940 * 329.99970 * 17 15 13
40 40 H 0.97001 * 120.00065 * 179.97438 * 21 20 18
41 41 H 1.08007 * 120.00490 * 179.70806 * 26 9 8
42 42 H 1.07995 * 119.99743 * 179.97438 * 27 26 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0633 1.1997 0.0000
4 8 1.4016 2.2188 -0.0005
5 7 3.4092 1.2703 -0.0005
6 6 4.0454 2.5150 0.0887
7 6 3.4835 3.6274 -0.5243
8 6 4.1128 4.8529 -0.4410
9 6 5.3031 4.9759 0.2649
10 7 5.9383 6.2186 0.3539
11 6 6.7006 6.5105 1.4263
12 8 6.7392 5.7472 2.3694
13 6 7.4977 7.7729 1.4544
14 8 7.4018 8.5716 0.5456
15 7 8.3236 8.0256 2.4890
16 6 8.4556 7.0518 3.5756
17 6 9.0894 9.2739 2.5272
18 6 8.2867 10.3342 3.2362
19 1 7.3045 10.1013 3.6203
20 6 8.8067 11.6012 3.3953
21 7 10.0028 11.8846 2.9280
22 14 7.8115 12.9156 4.2735
23 1 8.1151 12.8780 5.7267
24 1 8.1650 14.2509 3.7285
25 1 6.3632 12.6628 4.0637
26 6 5.8653 3.8628 0.8775
27 6 5.2382 2.6364 0.7896
28 1 -0.3634 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8899
31 1 3.9373 0.4590 -0.0626
32 1 2.5563 3.5325 -1.0700
33 1 3.6778 5.7171 -0.9211
34 1 5.8301 6.8704 -0.3562
35 1 9.1746 6.2839 3.2899
36 1 8.8028 7.5576 4.4766
37 1 7.4875 6.5895 3.7687
38 1 10.0257 9.1096 3.0605
39 1 9.3034 9.6001 1.5093
40 1 10.3685 12.7760 3.0396
41 1 6.7931 3.9571 1.4224
42 1 5.6754 1.7711 1.2655
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000802563323.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:42:54
Heat of formation + Delta-G solvation = -115.599933 kcal
Electronic energy + Delta-G solvation = -27688.962708 eV
Core-core repulsion = 23441.663090 eV
Total energy + Delta-G solvation = -4247.299618 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 335.136 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-42.28148 -41.85136 -40.41851 -39.34619 -37.85450 -37.11819 -36.35657 -34.99150
-34.59965 -32.03600 -30.40318 -29.91670 -28.36088 -27.65465 -26.29597 -24.79632
-24.01391 -23.20198 -22.06931 -21.05845 -19.97145 -19.05058 -18.81601 -18.72078
-18.48405 -17.66836 -17.50717 -17.16276 -17.07889 -16.78544 -16.19626 -15.78433
-15.32853 -15.24883 -15.09500 -14.81288 -14.70395 -14.35769 -14.17968 -14.08850
-13.87448 -13.77033 -13.53380 -13.22852 -13.00364 -12.97943 -12.61979 -12.39201
-12.24878 -12.22391 -12.16081 -11.85654 -11.72888 -11.70365 -10.81205 -10.65745
-10.32904 -9.97150 -9.60569 -8.85734 -8.25512 -6.40115 -0.15592 0.36427
0.53865 1.02700 1.29559 1.38586 1.40331 1.51320 1.60631 2.12166
2.36495 2.58839 2.76346 3.05088 3.14922 3.26650 3.85713 3.95659
4.24410 4.31504 4.34978 4.36982 4.39090 4.48285 4.58483 4.70073
4.73216 4.86371 4.97475 5.05239 5.14825 5.15153 5.19410 5.29131
5.34843 5.39354 5.45257 5.69020 5.89785 5.97842 5.99502 6.22199
6.38427 6.63953 6.70007 6.97383 7.13247 7.30389 8.82007
Molecular weight = 335.14amu
Principal moments of inertia in cm(-1)
A = 0.027009 B = 0.001995 C = 0.001952
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1036.429932 B =14031.757744 C =14342.452136
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.048 3.952
2 O -0.367 6.367
3 C 0.644 3.356
4 O -0.586 6.586
5 N -0.634 5.634
6 C 0.133 3.867
7 C -0.105 4.105
8 C -0.123 4.123
9 C 0.122 3.878
10 N -0.635 5.635
11 C 0.522 3.478
12 O -0.501 6.501
13 C 0.488 3.512
14 O -0.558 6.558
15 N -0.570 5.570
16 C 0.067 3.933
17 C 0.254 3.746
18 C -0.549 4.549
19 H 0.053 0.947
20 C 0.013 3.987
21 N -0.923 5.923
22 Si 0.968 3.032
23 H -0.265 1.265
24 H -0.278 1.278
25 H -0.274 1.274
26 C -0.115 4.115
27 C -0.105 4.105
28 H 0.139 0.861
29 H 0.060 0.940
30 H 0.064 0.936
31 H 0.434 0.566
32 H 0.140 0.860
33 H 0.147 0.853
34 H 0.428 0.572
35 H 0.070 0.930
36 H 0.069 0.931
37 H 0.105 0.895
38 H 0.035 0.965
39 H 0.014 0.986
40 H 0.269 0.731
41 H 0.140 0.860
42 H 0.163 0.837
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.421 -27.180 -6.451 31.438
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.046 4.046
2 O -0.280 6.280
3 C 0.398 3.602
4 O -0.476 6.476
5 N -0.288 5.288
6 C 0.040 3.960
7 C -0.125 4.125
8 C -0.144 4.144
9 C 0.028 3.972
10 N -0.281 5.281
11 C 0.304 3.696
12 O -0.377 6.377
13 C 0.270 3.730
14 O -0.438 6.438
15 N -0.301 5.301
16 C -0.075 4.075
17 C 0.134 3.866
18 C -0.587 4.587
19 H 0.071 0.929
20 C -0.187 4.187
21 N -0.562 5.562
22 Si 0.792 3.208
23 H -0.190 1.190
24 H -0.204 1.204
25 H -0.199 1.199
26 C -0.136 4.136
27 C -0.126 4.126
28 H 0.157 0.843
29 H 0.079 0.921
30 H 0.083 0.917
31 H 0.273 0.727
32 H 0.157 0.843
33 H 0.165 0.835
34 H 0.267 0.733
35 H 0.088 0.912
36 H 0.088 0.912
37 H 0.123 0.877
38 H 0.053 0.947
39 H 0.032 0.968
40 H 0.078 0.922
41 H 0.158 0.842
42 H 0.180 0.820
Dipole moment (debyes) X Y Z Total
from point charges -14.664 -26.741 -6.222 31.126
hybrid contribution -0.117 1.194 0.004 1.200
sum -14.781 -25.547 -6.218 30.163
Atomic orbital electron populations
1.23571 0.72290 1.05911 1.02781 1.86263 1.26069 1.29264 1.86402
1.18301 0.83467 0.82602 0.75804 1.91010 1.65218 1.35775 1.55623
1.41775 1.03048 1.09267 1.74670 1.17543 0.94433 0.84689 0.99381
1.21092 1.00544 0.91513 0.99387 1.20921 0.92741 0.98991 1.01714
1.18006 0.93553 0.84356 1.01314 1.43151 1.46302 1.16541 1.22117
1.20061 0.80337 0.86362 0.82805 1.90611 1.63660 1.49748 1.33652
1.20146 0.82066 0.87244 0.83570 1.90715 1.66103 1.49298 1.37665
1.48111 1.40428 1.20833 1.20684 1.22440 1.05017 0.91034 0.88975
1.19067 0.90854 0.79881 0.96808 1.21628 1.02992 0.96548 1.37555
0.92882 1.25801 0.96162 1.00502 0.96235 1.70027 1.17493 1.22282
1.46401 0.85408 0.78588 0.77850 0.78928 1.19009 1.20358 1.19856
1.21119 1.01096 0.90750 1.00621 1.20928 0.95015 0.98382 0.98231
0.84332 0.92084 0.91706 0.72667 0.84268 0.83486 0.73257 0.91153
0.91173 0.87727 0.94723 0.96781 0.92190 0.84247 0.81980
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 0.42 10.56 113.37 1.20 1.62 16
2 O -0.37 -5.09 10.62 -55.57 -0.59 -5.67 16
3 C 0.64 11.81 8.59 129.79 1.11 12.92 16
4 O -0.59 -14.63 13.59 19.81 0.27 -14.36 16
5 N -0.63 -8.98 5.35 -429.33 -2.30 -11.27 16
6 C 0.13 2.43 6.30 38.13 0.24 2.67 16
7 C -0.10 -2.20 8.68 22.37 0.19 -2.01 16
8 C -0.12 -2.61 9.94 22.38 0.22 -2.39 16
9 C 0.12 2.95 6.35 38.20 0.24 3.20 16
10 N -0.64 -17.39 5.34 -304.74 -1.63 -19.02 16
11 C 0.52 17.42 7.54 87.23 0.66 18.08 16
12 O -0.50 -16.52 10.55 -3.39 -0.04 -16.55 16
13 C 0.49 20.55 7.73 87.23 0.67 21.22 16
14 O -0.56 -26.80 16.06 -3.30 -0.05 -26.85 16
15 N -0.57 -25.06 2.86 -852.83 -2.44 -27.49 16
16 C 0.07 2.33 9.58 127.77 1.22 3.55 16
17 C 0.25 13.52 5.14 85.63 0.44 13.96 16
18 C -0.55 -31.33 9.39 25.60 0.24 -31.09 16
19 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16
20 C 0.01 0.73 5.46 84.66 0.46 1.19 16
21 N -0.92 -54.52 13.29 21.45 0.28 -54.24 16
22 Si 0.97 44.44 29.54 68.60 2.03 46.47 16
23 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16
24 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16
25 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16
26 C -0.12 -2.59 8.67 22.39 0.19 -2.40 16
27 C -0.11 -1.80 9.96 22.37 0.22 -1.57 16
28 H 0.14 0.23 8.14 -2.39 -0.02 0.22 16
29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16
30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16
31 H 0.43 3.11 8.93 -92.71 -0.83 2.28 16
32 H 0.14 3.08 6.25 -2.91 -0.02 3.06 16
33 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16
34 H 0.43 10.80 8.28 -92.71 -0.77 10.03 16
35 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16
36 H 0.07 2.44 8.02 -2.39 -0.02 2.42 16
37 H 0.10 3.52 5.30 -3.28 -0.02 3.50 16
38 H 0.03 1.86 8.07 -2.39 -0.02 1.84 16
39 H 0.01 0.84 7.41 -2.38 -0.02 0.82 16
40 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16
41 H 0.14 3.37 6.13 -2.91 -0.02 3.35 16
42 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16
Total: -1.00 -74.53 365.58 2.37 -72.16
By element:
Atomic # 1 Polarization: 18.38 SS G_CDS: -0.50 Total: 17.88 kcal
Atomic # 6 Polarization: 31.63 SS G_CDS: 7.33 Total: 38.96 kcal
Atomic # 7 Polarization: -105.95 SS G_CDS: -6.07 Total: -112.02 kcal
Atomic # 8 Polarization: -63.03 SS G_CDS: -0.41 Total: -63.44 kcal
Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal
Total: -74.53 2.37 -72.16 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000802563323.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.440 kcal
(2) G-P(sol) polarization free energy of solvation -74.528 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.968 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.160 kcal
(6) G-S(sol) free energy of system = (1) + (5) -115.600 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds